Wall clock time and date at job start Tue Mar 31 2020 08:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38242 * 119.89112 * 2 1 4 4 C 1.37991 * 120.23046 * 180.25507 * 3 2 1 5 5 C 1.39628 * 120.00112 * 359.49256 * 4 3 2 6 6 C 1.47862 * 120.10221 * 180.27708 * 5 4 3 7 7 N 1.34775 * 120.00508 * 359.97438 * 6 5 4 8 8 O 1.21555 * 120.00028 * 179.97438 * 6 5 4 9 9 C 1.39441 * 119.78896 * 0.24724 * 5 4 3 10 10 C 1.38693 * 119.77083 * 0.02562 * 9 5 4 11 11 N 1.39754 * 120.00598 * 180.02562 * 10 9 5 12 12 C 1.34773 * 120.00002 * 325.24334 * 11 10 9 13 13 O 1.21380 * 120.00353 * 4.51476 * 12 11 10 14 14 C 1.49361 * 120.00333 * 184.51864 * 12 11 10 15 15 O 1.21358 * 119.99393 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00355 * 179.97438 * 14 12 11 17 17 C 1.46490 * 120.00237 * 180.02562 * 16 14 12 18 18 C 1.50702 * 109.47493 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00299 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00131 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99855 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46861 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47321 * 209.99583 * 22 20 18 25 25 H 1.48503 * 109.47199 * 329.99864 * 22 20 18 26 26 H 1.08997 * 109.47160 * 270.25426 * 1 2 3 27 27 H 1.08995 * 109.46788 * 30.25688 * 1 2 3 28 28 H 1.08995 * 109.46936 * 150.25624 * 1 2 3 29 29 H 1.07999 * 119.88814 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.99887 * 179.75848 * 4 3 2 31 31 H 0.97003 * 119.99369 * 0.02562 * 7 6 5 32 32 H 0.97002 * 120.00297 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.11470 * 179.97438 * 9 5 4 34 34 H 0.97002 * 120.00243 * 145.24021 * 11 10 9 35 35 H 0.97004 * 119.99519 * 0.02562 * 16 14 12 36 36 H 1.08999 * 109.47138 * 300.00158 * 17 16 14 37 37 H 1.08996 * 109.47280 * 59.99930 * 17 16 14 38 38 H 0.96998 * 120.00128 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1985 0.0000 4 6 3.5758 1.2067 -0.0053 5 6 4.2812 0.0017 0.0000 6 6 5.7598 0.0079 0.0005 7 7 6.4289 1.1778 -0.0047 8 8 6.3720 -1.0423 0.0056 9 6 3.5867 -1.2075 0.0055 10 6 2.1998 -1.2051 0.0050 11 7 1.4988 -2.4141 0.0110 12 6 1.9906 -3.4815 -0.6488 13 8 3.0805 -3.4178 -1.1792 14 6 1.1945 -4.7427 -0.7275 15 8 0.1045 -4.8062 -0.1976 16 7 1.6860 -5.8099 -1.3877 17 6 0.9049 -7.0468 -1.4653 18 6 1.6731 -8.0776 -2.2516 19 1 2.6461 -7.8357 -2.6530 20 6 1.1342 -9.3299 -2.4577 21 7 1.8044 -10.2293 -3.1444 22 14 -0.5485 -9.7485 -1.7629 23 1 -1.5947 -9.4066 -2.7598 24 1 -0.6109 -11.2005 -1.4580 25 1 -0.7776 -8.9710 -0.5185 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5178 28 1 -0.3633 -0.8922 -0.5098 29 1 1.6524 2.1317 0.0004 30 1 4.1102 2.1452 -0.0092 31 1 5.9403 2.0158 -0.0084 32 1 7.3989 1.1818 -0.0047 33 1 4.1270 -2.1426 0.0092 34 1 0.6584 -2.4851 0.4901 35 1 2.5571 -5.7589 -1.8115 36 1 0.7185 -7.4225 -0.4593 37 1 -0.0453 -6.8459 -1.9600 38 1 1.4252 -11.1102 -3.2897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320921968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:25 Heat of formation + Delta-G solvation = -110.685119 kcal Electronic energy + Delta-G solvation = -23820.655420 eV Core-core repulsion = 20047.788736 eV Total energy + Delta-G solvation = -3772.866685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31088 -41.07720 -40.07803 -39.11586 -36.75571 -35.94534 -34.80466 -34.44304 -33.54650 -31.13872 -30.28250 -28.45335 -26.47742 -24.43198 -23.88275 -23.04741 -21.57823 -21.51659 -20.18193 -19.31608 -18.66213 -18.27580 -17.63515 -17.21644 -17.09399 -16.88084 -16.32965 -16.11438 -15.99546 -15.78410 -15.30644 -15.11186 -14.87256 -14.62198 -14.60333 -14.43259 -14.07510 -13.39955 -13.15262 -13.06023 -12.88818 -12.72409 -12.70441 -12.33190 -11.92662 -11.72938 -11.67867 -11.23304 -10.94970 -10.78821 -10.76924 -10.22812 -9.84004 -9.33741 -8.41352 -6.51658 -0.33191 -0.01812 0.47769 1.17824 1.35720 1.37560 1.49365 1.73424 2.02299 2.27756 2.42122 2.63484 2.77944 2.93338 3.32625 3.71975 3.78266 3.97842 4.07455 4.24025 4.34344 4.61340 4.66680 4.79012 4.82559 4.92935 5.07305 5.10578 5.16059 5.20677 5.22072 5.27019 5.36234 5.75390 5.81243 5.86711 6.02723 6.38414 6.40691 6.50047 6.63275 6.83210 7.14653 7.27363 8.73897 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003033 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.674380 B = 9229.852328 C =10403.308950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 C -0.101 4.101 4 C -0.074 4.074 5 C -0.148 4.148 6 C 0.557 3.443 7 N -0.823 5.823 8 O -0.595 6.595 9 C -0.087 4.087 10 C 0.108 3.892 11 N -0.629 5.629 12 C 0.512 3.488 13 O -0.520 6.520 14 C 0.501 3.499 15 O -0.547 6.547 16 N -0.672 5.672 17 C 0.230 3.770 18 C -0.558 4.558 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.933 5.933 22 Si 0.946 3.054 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.250 1.250 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.181 0.819 30 H 0.174 0.826 31 H 0.420 0.580 32 H 0.413 0.587 33 H 0.112 0.888 34 H 0.433 0.567 35 H 0.412 0.588 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 32.241 9.138 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.093 4.093 5 C -0.152 4.152 6 C 0.343 3.657 7 N -0.388 5.388 8 O -0.477 6.477 9 C -0.108 4.108 10 C 0.015 3.985 11 N -0.277 5.277 12 C 0.294 3.706 13 O -0.395 6.395 14 C 0.281 3.719 15 O -0.426 6.426 16 N -0.322 5.322 17 C 0.107 3.893 18 C -0.596 4.596 19 H 0.069 0.931 20 C -0.176 4.176 21 N -0.571 5.571 22 Si 0.768 3.232 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.174 1.174 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.198 0.802 30 H 0.192 0.808 31 H 0.253 0.747 32 H 0.245 0.755 33 H 0.130 0.870 34 H 0.273 0.727 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.471 31.243 9.036 32.557 hybrid contribution 0.144 -0.943 -0.091 0.958 sum -1.327 30.301 8.945 31.621 Atomic orbital electron populations 1.20972 0.88349 1.04442 1.04340 1.20346 0.98033 0.90827 0.97960 1.21323 0.93593 0.97982 0.99001 1.21709 0.94942 0.96732 0.95915 1.19759 0.92469 0.94592 1.08389 1.18535 0.88065 0.84093 0.74958 1.43476 1.11631 1.07662 1.76046 1.90842 1.70780 1.33916 1.52116 1.21273 0.93192 0.98962 0.97411 1.17659 0.90524 0.85327 1.05008 1.42959 1.26331 1.08304 1.50136 1.20270 0.85993 0.85128 0.79167 1.90812 1.20604 1.82854 1.45192 1.19977 0.86414 0.84840 0.80658 1.90700 1.21235 1.83713 1.46989 1.45997 1.22709 1.12251 1.51236 1.19396 0.91892 0.80938 0.97050 1.21259 1.05209 0.97619 1.35508 0.93101 1.25714 1.02029 0.95443 0.94432 1.70003 1.40412 1.06099 1.40568 0.85733 0.78974 0.78229 0.80227 1.18518 1.19964 1.17411 0.88562 0.88027 0.92314 0.80206 0.80827 0.74692 0.75480 0.86961 0.72665 0.75171 0.95066 0.95002 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.46 71.24 0.67 -0.55 16 2 C -0.07 -1.04 5.90 -19.68 -0.12 -1.16 16 3 C -0.10 -0.93 9.67 22.21 0.21 -0.72 16 4 C -0.07 -0.79 9.54 22.55 0.22 -0.58 16 5 C -0.15 -3.21 5.87 -20.10 -0.12 -3.33 16 6 C 0.56 13.24 8.05 86.79 0.70 13.94 16 7 N -0.82 -9.12 8.82 -175.59 -1.55 -10.67 16 8 O -0.60 -21.42 17.18 -3.89 -0.07 -21.48 16 9 C -0.09 -2.52 8.24 22.67 0.19 -2.33 16 10 C 0.11 2.60 6.28 38.17 0.24 2.84 16 11 N -0.63 -16.57 4.72 -304.93 -1.44 -18.01 16 12 C 0.51 17.63 7.73 87.24 0.67 18.30 16 13 O -0.52 -20.64 13.89 -3.34 -0.05 -20.69 16 14 C 0.50 19.43 7.89 87.24 0.69 20.12 16 15 O -0.55 -22.02 16.48 -3.27 -0.05 -22.07 16 16 N -0.67 -29.11 5.54 -468.26 -2.59 -31.70 16 17 C 0.23 11.19 4.50 85.64 0.38 11.57 16 18 C -0.56 -31.63 9.83 25.60 0.25 -31.38 16 19 H 0.05 3.13 7.84 -2.91 -0.02 3.11 16 20 C 0.02 1.38 5.47 84.66 0.46 1.84 16 21 N -0.93 -56.71 13.96 21.45 0.30 -56.41 16 22 Si 0.95 43.06 27.47 68.60 1.88 44.94 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.06 0.78 7.16 -2.39 -0.02 0.76 16 29 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 30 H 0.17 0.16 6.40 -2.91 -0.02 0.14 16 31 H 0.42 0.99 6.86 -92.71 -0.64 0.36 16 32 H 0.41 3.78 8.93 -92.71 -0.83 2.95 16 33 H 0.11 4.23 5.78 -2.91 -0.02 4.22 16 34 H 0.43 9.42 7.31 -92.71 -0.68 8.74 16 35 H 0.41 17.69 7.79 -92.71 -0.72 16.97 16 36 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.03 1.54 7.57 -2.39 -0.02 1.52 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -82.76 332.67 -0.85 -83.61 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.74 Total: 23.92 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 4.46 Total: 28.57 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -5.29 Total: -116.79 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -0.17 Total: -64.25 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Total: -82.76 -0.85 -83.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320921968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds