Wall clock time and date at job start Tue Mar 31 2020 08:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99586 * 2 1 4 4 C 1.50694 * 120.00142 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47513 * 94.99725 * 4 2 1 6 6 C 1.50694 * 109.47513 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99898 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00238 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00203 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47214 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47166 * 209.99956 * 21 19 17 24 24 H 1.48496 * 109.46623 * 329.99754 * 21 19 17 25 25 H 1.07998 * 119.99945 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00215 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47598 * 269.99704 * 3 2 1 28 28 H 1.08999 * 109.47358 * 30.00203 * 3 2 1 29 29 H 1.09005 * 109.46496 * 149.99789 * 3 2 1 30 30 H 1.09008 * 109.47211 * 335.00205 * 4 2 1 31 31 H 1.09000 * 109.47128 * 215.00368 * 4 2 1 32 32 H 1.09003 * 109.46813 * 59.99692 * 5 4 2 33 33 H 1.09001 * 109.46927 * 300.00455 * 5 4 2 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96999 * 120.00173 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1815 -2.9880 -1.4383 7 8 3.4054 -3.5595 -0.3921 8 7 3.6070 -3.5200 -2.6012 9 6 4.2051 -4.7872 -2.6147 10 6 3.9218 -5.7006 -1.6108 11 6 4.5134 -6.9501 -1.6257 12 6 5.3881 -7.2938 -2.6403 13 6 5.6766 -6.3902 -3.6453 14 6 5.0875 -5.1336 -3.6385 15 16 5.4527 -3.9794 -4.9186 16 6 6.6179 -4.8901 -5.9691 17 6 7.0316 -4.0226 -7.1298 18 1 6.6337 -3.0231 -7.2257 19 6 7.9181 -4.5048 -8.0692 20 7 8.2795 -3.7476 -9.0820 21 14 8.6058 -6.2337 -7.9037 22 1 7.7184 -7.1895 -8.6136 23 1 9.9653 -6.2848 -8.4989 24 1 8.6804 -6.6012 -6.4668 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 2.2452 1.6199 -1.0276 28 1 1.4744 2.0648 0.5139 29 1 3.0159 1.1748 0.5139 30 1 1.4386 -2.0857 0.4334 31 1 2.9742 -1.1990 0.5890 32 1 3.0523 -0.9027 -1.8718 33 1 1.5167 -1.7893 -2.0272 34 1 3.4993 -3.0257 -3.4288 35 1 3.2396 -5.4356 -0.8165 36 1 4.2917 -7.6600 -0.8425 37 1 5.8504 -8.2699 -2.6448 38 1 6.3598 -6.6621 -4.4363 39 1 7.4978 -5.1608 -5.3855 40 1 6.1385 -5.7942 -6.3444 41 1 8.9029 -4.0870 -9.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338404690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:47 Heat of formation + Delta-G solvation = -7.933437 kcal Electronic energy + Delta-G solvation = -21413.974966 eV Core-core repulsion = 18191.857144 eV Total energy + Delta-G solvation = -3222.117823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54016 -38.38954 -36.65163 -34.75109 -33.20705 -31.74324 -30.92718 -29.48508 -29.21658 -27.53641 -25.06639 -23.16340 -22.81964 -21.80985 -20.22274 -18.68690 -18.04149 -17.09642 -16.86869 -16.63514 -15.99225 -15.14807 -15.01514 -14.59156 -14.50568 -14.17431 -14.05932 -13.59071 -13.39475 -13.36089 -13.33930 -12.86323 -12.56853 -12.45481 -12.34607 -11.96494 -11.87974 -11.36908 -11.30913 -11.12980 -10.93491 -10.62920 -10.40264 -10.30960 -9.83925 -9.76854 -9.34467 -9.31128 -9.28106 -8.81997 -8.11731 -6.75174 -6.30852 -4.35250 1.37659 1.55447 1.91371 2.19234 2.57145 3.05554 3.13322 3.20525 3.21610 3.37389 3.97298 4.20004 4.39436 4.61513 4.73002 4.89655 4.98425 5.00385 5.12892 5.21076 5.26410 5.32241 5.40439 5.47696 5.60818 5.66978 5.68489 5.69578 5.71862 5.89154 6.06695 6.32869 6.35536 6.39090 6.43019 6.49245 6.58620 6.59808 6.72645 7.16027 7.25253 7.39650 8.04653 8.14271 8.68539 9.23811 10.80744 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.003256 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.508357 B = 8597.566633 C =10088.636013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.513 3.487 7 O -0.525 6.525 8 N -0.662 5.662 9 C 0.153 3.847 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.105 4.105 15 S -0.132 6.132 16 C 0.034 3.966 17 C -0.522 4.522 18 H 0.085 0.915 19 C 0.084 3.916 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.415 0.585 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 2.050 16.240 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.301 3.699 7 O -0.401 6.401 8 N -0.306 5.306 9 C 0.053 3.947 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.220 4.220 15 S 0.115 5.885 16 C -0.114 4.114 17 C -0.561 4.561 18 H 0.103 0.897 19 C -0.122 4.122 20 N -0.523 5.523 21 Si 0.702 3.298 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.252 0.748 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.961 2.919 16.534 21.211 hybrid contribution 0.934 -1.955 -0.463 2.216 sum -12.027 0.964 16.072 20.097 Atomic orbital electron populations 1.23719 0.95227 1.01890 1.02509 1.21776 0.95426 0.95696 0.99552 1.20902 1.00267 0.94408 1.02348 1.20438 1.00979 0.94352 0.95014 1.21658 1.01307 0.94699 0.99773 1.20864 0.78895 0.87090 0.83017 1.90659 1.55733 1.62414 1.31326 1.43621 1.58715 1.17261 1.11023 1.17231 0.95765 0.85362 0.96386 1.21230 1.01333 0.92383 0.98848 1.20959 0.98274 0.96183 0.98755 1.21016 0.98994 0.99279 0.94655 1.21123 1.00690 0.92522 0.99957 1.21909 1.00120 0.99480 1.00533 1.85107 1.57951 1.23131 1.22344 1.21720 0.94656 0.97985 0.97019 1.20386 1.28045 1.01955 1.05683 0.89695 1.24821 0.95250 0.97638 0.94456 1.69850 1.33201 1.36794 1.12482 0.86835 0.79138 0.84721 0.79102 1.19669 1.20587 1.18911 0.88450 0.88490 0.91222 0.91900 0.91677 0.90479 0.90295 0.88229 0.88355 0.74783 0.83822 0.86041 0.86131 0.85338 0.93810 0.94294 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 13.89 29.01 0.40 -1.06 16 2 C -0.12 -0.99 5.31 -101.07 -0.54 -1.53 16 3 C -0.12 -0.85 10.03 36.01 0.36 -0.49 16 4 C -0.07 -0.64 4.67 -27.88 -0.13 -0.77 16 5 C -0.13 -1.22 5.68 -27.88 -0.16 -1.38 16 6 C 0.51 6.61 7.64 -10.99 -0.08 6.53 16 7 O -0.52 -8.19 13.15 5.54 0.07 -8.11 16 8 N -0.66 -9.24 5.17 -9.71 -0.05 -9.29 16 9 C 0.15 2.52 6.44 -83.43 -0.54 1.98 16 10 C -0.12 -1.80 8.72 -39.42 -0.34 -2.14 16 11 C -0.12 -1.68 10.04 -39.55 -0.40 -2.08 16 12 C -0.12 -1.74 10.04 -39.57 -0.40 -2.13 16 13 C -0.12 -2.03 9.36 -39.40 -0.37 -2.40 16 14 C -0.10 -1.89 6.12 -38.90 -0.24 -2.13 16 15 S -0.13 -2.62 20.55 -107.50 -2.21 -4.83 16 16 C 0.03 0.78 3.16 36.00 0.11 0.90 16 17 C -0.52 -14.22 9.68 -34.44 -0.33 -14.55 16 18 H 0.09 2.52 7.96 -52.48 -0.42 2.10 16 19 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 21 Si 0.88 20.24 27.47 -169.99 -4.67 15.58 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 25 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 26 H 0.10 0.63 8.04 -52.48 -0.42 0.20 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.08 0.74 7.94 -51.92 -0.41 0.33 16 31 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.41 5.27 7.65 -40.82 -0.31 4.96 16 35 H 0.14 2.19 5.79 -52.48 -0.30 1.89 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 2.26 5.88 -52.48 -0.31 1.95 16 39 H 0.04 1.01 6.81 -51.92 -0.35 0.65 16 40 H 0.04 0.87 7.17 -51.92 -0.37 0.50 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -30.51 355.58 -9.33 -39.84 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.86 Total: 5.64 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.74 Total: -19.03 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.72 Total: -34.44 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.21 Total: -4.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.51 -9.33 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338404690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.904 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds