Wall clock time and date at job start Tue Mar 31 2020 08:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99586 * 2 1 4 4 C 1.50694 * 120.00142 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47513 * 94.99725 * 4 2 1 6 6 C 1.50694 * 109.47513 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99898 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00238 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00203 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47214 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47166 * 209.99956 * 21 19 17 24 24 H 1.48496 * 109.46623 * 329.99754 * 21 19 17 25 25 H 1.07998 * 119.99945 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00215 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47598 * 269.99704 * 3 2 1 28 28 H 1.08999 * 109.47358 * 30.00203 * 3 2 1 29 29 H 1.09005 * 109.46496 * 149.99789 * 3 2 1 30 30 H 1.09008 * 109.47211 * 335.00205 * 4 2 1 31 31 H 1.09000 * 109.47128 * 215.00368 * 4 2 1 32 32 H 1.09003 * 109.46813 * 59.99692 * 5 4 2 33 33 H 1.09001 * 109.46927 * 300.00455 * 5 4 2 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96999 * 120.00173 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 6 3.1815 -2.9880 -1.4383 7 8 3.4054 -3.5595 -0.3921 8 7 3.6070 -3.5200 -2.6012 9 6 4.2051 -4.7872 -2.6147 10 6 3.9218 -5.7006 -1.6108 11 6 4.5134 -6.9501 -1.6257 12 6 5.3881 -7.2938 -2.6403 13 6 5.6766 -6.3902 -3.6453 14 6 5.0875 -5.1336 -3.6385 15 16 5.4527 -3.9794 -4.9186 16 6 6.6179 -4.8901 -5.9691 17 6 7.0316 -4.0226 -7.1298 18 1 6.6337 -3.0231 -7.2257 19 6 7.9181 -4.5048 -8.0692 20 7 8.2795 -3.7476 -9.0820 21 14 8.6058 -6.2337 -7.9037 22 1 7.7184 -7.1895 -8.6136 23 1 9.9653 -6.2848 -8.4989 24 1 8.6804 -6.6012 -6.4668 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 2.2452 1.6199 -1.0276 28 1 1.4744 2.0648 0.5139 29 1 3.0159 1.1748 0.5139 30 1 1.4386 -2.0857 0.4334 31 1 2.9742 -1.1990 0.5890 32 1 3.0523 -0.9027 -1.8718 33 1 1.5167 -1.7893 -2.0272 34 1 3.4993 -3.0257 -3.4288 35 1 3.2396 -5.4356 -0.8165 36 1 4.2917 -7.6600 -0.8425 37 1 5.8504 -8.2699 -2.6448 38 1 6.3598 -6.6621 -4.4363 39 1 7.4978 -5.1608 -5.3855 40 1 6.1385 -5.7942 -6.3444 41 1 8.9029 -4.0870 -9.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338404690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:46 Heat of formation + Delta-G solvation = -24.082346 kcal Electronic energy + Delta-G solvation = -21414.675236 eV Core-core repulsion = 18191.857144 eV Total energy + Delta-G solvation = -3222.818092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64460 -39.52614 -37.34570 -35.90396 -35.25763 -32.59235 -32.24632 -31.31450 -30.35443 -28.08751 -25.96094 -24.91755 -24.08486 -23.08374 -21.30063 -19.50443 -19.33625 -18.78867 -17.98797 -17.89998 -16.92066 -16.66764 -16.07495 -15.96122 -15.46732 -15.35259 -15.12278 -14.97214 -14.86190 -14.61756 -14.35379 -14.13558 -14.03609 -13.48470 -13.16816 -13.03114 -12.78466 -12.67555 -12.51548 -12.21998 -12.12112 -11.98684 -11.81337 -11.76729 -11.56748 -11.01793 -10.94712 -10.87047 -10.59645 -9.90915 -9.33077 -8.41797 -8.23876 -6.52657 0.17550 0.31879 0.66969 1.30907 1.32508 1.33753 1.43611 1.52554 1.71054 2.05687 2.25743 2.76813 2.91440 3.52656 3.85703 3.97070 4.02239 4.10911 4.21234 4.33080 4.37876 4.46984 4.48952 4.52229 4.63543 4.64372 4.70474 4.86650 4.87670 4.96600 5.10548 5.12062 5.16019 5.19629 5.24089 5.29064 5.43787 5.54309 5.76883 5.99061 5.99965 6.00266 6.31971 6.51111 6.99217 7.10738 8.73432 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.003256 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.508357 B = 8597.566633 C =10088.636013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.126 4.126 6 C 0.513 3.487 7 O -0.552 6.552 8 N -0.663 5.663 9 C 0.148 3.852 10 C -0.126 4.126 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.132 4.132 14 C -0.127 4.127 15 S -0.140 6.140 16 C 0.037 3.963 17 C -0.533 4.533 18 H 0.044 0.956 19 C 0.026 3.974 20 N -0.934 5.934 21 Si 0.945 3.055 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.245 1.245 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.419 0.581 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 0.369 17.950 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.134 4.134 3 C -0.180 4.180 4 C -0.104 4.104 5 C -0.166 4.166 6 C 0.303 3.697 7 O -0.431 6.431 8 N -0.308 5.308 9 C 0.047 3.953 10 C -0.148 4.148 11 C -0.127 4.127 12 C -0.137 4.137 13 C -0.156 4.156 14 C -0.242 4.242 15 S 0.105 5.895 16 C -0.111 4.111 17 C -0.572 4.572 18 H 0.062 0.938 19 C -0.175 4.175 20 N -0.573 5.573 21 Si 0.767 3.233 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.169 1.169 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.257 0.743 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.761 1.246 18.265 22.902 hybrid contribution 1.066 -1.391 -0.877 1.959 sum -12.695 -0.145 17.388 21.530 Atomic orbital electron populations 1.23873 0.95090 1.02600 1.01383 1.21772 0.95660 0.95446 1.00565 1.20922 1.00177 0.94135 1.02743 1.20368 1.00442 0.94893 0.94660 1.21705 1.01794 0.92740 1.00338 1.21532 0.78237 0.87823 0.82122 1.90637 1.56819 1.63454 1.32149 1.43739 1.58576 1.16765 1.11697 1.17442 0.95356 0.86454 0.96047 1.21422 1.01802 0.92993 0.98596 1.21394 0.96502 0.95949 0.98904 1.21343 0.98681 1.00020 0.93611 1.21262 1.00811 0.92799 1.00774 1.21851 1.02131 0.99647 1.00602 1.84949 1.57506 1.23823 1.23235 1.21470 0.95702 0.97728 0.96222 1.20574 1.28071 1.01020 1.07506 0.93782 1.25800 0.95478 1.02396 0.93830 1.69993 1.34324 1.39268 1.13693 0.85737 0.78396 0.78920 0.80249 1.18442 1.20198 1.16856 0.88229 0.87353 0.90776 0.91047 0.91972 0.91217 0.91530 0.86830 0.86309 0.74312 0.83652 0.82567 0.82972 0.86036 0.93613 0.93491 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 13.89 67.78 0.94 -1.58 16 2 C -0.13 -1.95 5.31 -16.49 -0.09 -2.04 16 3 C -0.12 -1.54 10.03 71.24 0.71 -0.83 16 4 C -0.07 -1.13 4.67 29.85 0.14 -0.99 16 5 C -0.13 -2.12 5.68 29.85 0.17 -1.95 16 6 C 0.51 12.79 7.64 87.66 0.67 13.46 16 7 O -0.55 -16.86 13.15 -3.08 -0.04 -16.90 16 8 N -0.66 -18.11 5.17 -303.01 -1.57 -19.68 16 9 C 0.15 4.71 6.44 38.22 0.25 4.96 16 10 C -0.13 -3.66 8.72 22.37 0.20 -3.47 16 11 C -0.11 -2.62 10.04 22.29 0.22 -2.40 16 12 C -0.12 -3.02 10.04 22.27 0.22 -2.80 16 13 C -0.13 -4.32 9.36 22.39 0.21 -4.11 16 14 C -0.13 -4.49 6.12 22.71 0.14 -4.35 16 15 S -0.14 -5.64 20.55 -56.49 -1.16 -6.80 16 16 C 0.04 1.70 3.16 71.23 0.23 1.93 16 17 C -0.53 -29.90 9.68 25.60 0.25 -29.66 16 18 H 0.04 2.75 7.96 -2.91 -0.02 2.73 16 19 C 0.03 1.45 5.47 84.65 0.46 1.92 16 20 N -0.93 -56.16 13.96 21.45 0.30 -55.86 16 21 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.25 -9.89 6.54 99.48 0.65 -9.24 16 25 H 0.10 1.24 7.99 -2.91 -0.02 1.22 16 26 H 0.11 1.17 8.04 -2.91 -0.02 1.14 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 29 H 0.06 0.80 8.09 -2.38 -0.02 0.78 16 30 H 0.07 1.29 7.94 -2.38 -0.02 1.27 16 31 H 0.07 1.30 8.06 -2.39 -0.02 1.28 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.42 10.52 7.65 -92.71 -0.71 9.81 16 35 H 0.15 4.20 5.79 -2.91 -0.02 4.18 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.12 4.09 5.88 -2.91 -0.02 4.07 16 39 H 0.05 2.08 6.81 -2.39 -0.02 2.06 16 40 H 0.05 2.08 7.17 -2.39 -0.02 2.06 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.37 355.58 4.40 -62.97 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.27 Total: 24.85 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 4.72 Total: -31.90 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.27 Total: -75.54 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.04 Total: -16.90 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.16 Total: -6.80 kcal Total: -67.37 4.40 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338404690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.884 kcal (2) G-P(sol) polarization free energy of solvation -67.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds