Wall clock time and date at job start Tue Mar 31 2020 08:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33947 * 125.61514 * 2 1 4 4 C 1.34913 * 109.38221 * 180.14911 * 3 2 1 5 5 C 1.46631 * 125.98955 * 179.82369 * 4 3 2 6 6 O 1.21708 * 120.00059 * 179.69723 * 5 4 3 7 7 N 1.34783 * 119.99605 * 359.69918 * 5 4 3 8 8 C 1.40072 * 119.99547 * 179.97438 * 7 5 4 9 9 C 1.40429 * 125.97960 * 359.97438 * 8 7 5 10 10 C 1.35237 * 107.86452 * 179.78256 * 9 8 7 11 11 N 1.34962 * 107.86631 * 0.38685 * 10 9 8 12 12 C 1.46500 * 125.97410 * 179.87309 * 11 10 9 13 13 C 1.50706 * 109.47299 * 124.71196 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.31237 * 125.97404 * 180.02562 * 8 7 5 22 22 C 1.36563 * 108.02502 * 359.56929 * 4 3 2 23 23 C 1.35131 * 125.61763 * 179.66697 * 2 1 3 24 24 C 1.50696 * 126.43967 * 0.04146 * 23 2 1 25 25 O 1.42897 * 109.47161 * 179.97438 * 24 23 2 26 26 H 1.08992 * 109.47117 * 270.33235 * 1 2 3 27 27 H 1.09005 * 109.46878 * 30.33893 * 1 2 3 28 28 H 1.08999 * 109.46689 * 150.33188 * 1 2 3 29 29 H 0.96995 * 119.99927 * 359.97438 * 7 5 4 30 30 H 1.08003 * 126.06149 * 0.02562 * 9 8 7 31 31 H 1.08004 * 126.06072 * 180.24187 * 10 9 8 32 32 H 1.09004 * 109.47078 * 4.71958 * 12 11 10 33 33 H 1.08993 * 109.47364 * 244.71729 * 12 11 10 34 34 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 35 35 H 1.07994 * 126.64736 * 180.24117 * 22 4 3 36 36 H 1.08998 * 109.47142 * 300.00030 * 24 23 2 37 37 H 1.09004 * 109.47309 * 59.99861 * 24 23 2 38 38 H 0.96702 * 114.00120 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2870 1.0889 0.0000 4 6 3.5823 0.7118 -0.0033 5 6 4.7413 1.6100 -0.0081 6 8 5.8680 1.1498 -0.0052 7 7 4.5588 2.9454 -0.0156 8 6 5.6659 3.8035 -0.0195 9 6 7.0141 3.4107 -0.0159 10 6 7.7725 4.5304 -0.0267 11 7 6.9411 5.5936 -0.0281 12 6 7.3449 7.0018 -0.0358 13 6 6.7011 7.7027 -1.2043 14 1 6.0553 7.1540 -1.8739 15 6 6.9364 9.0441 -1.4186 16 7 7.7185 9.7135 -0.6001 17 14 6.1377 9.9130 -2.8666 18 1 6.5423 11.3418 -2.8710 19 1 6.5753 9.2706 -4.1320 20 1 4.6606 9.8172 -2.7478 21 7 5.6246 5.1152 -0.0264 22 6 3.6251 -0.6532 0.0043 23 6 2.2939 -1.0985 0.0064 24 6 1.8297 -2.5321 0.0138 25 8 2.9647 -3.4003 0.0186 26 1 -0.3633 0.0060 1.0276 27 1 -0.3633 0.8870 -0.5191 28 1 -0.3633 -0.8930 -0.5087 29 1 3.6608 3.3122 -0.0182 30 1 7.3803 2.3947 -0.0100 31 1 8.8519 4.5672 -0.0308 32 1 8.4293 7.0684 -0.1249 33 1 7.0269 7.4761 0.8925 34 1 8.1331 9.2624 0.1520 35 1 4.5113 -1.2703 0.0077 36 1 1.2284 -2.7147 0.9044 37 1 1.2294 -2.7243 -0.8755 38 1 2.7404 -4.3410 0.0239 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417648667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:38 Heat of formation + Delta-G solvation = 11.183202 kcal Electronic energy + Delta-G solvation = -23497.892425 eV Core-core repulsion = 19730.310348 eV Total energy + Delta-G solvation = -3767.582078 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.04242 -40.74276 -39.16025 -37.39647 -35.00682 -33.91578 -33.58776 -32.36640 -30.92786 -29.42525 -28.36063 -26.79123 -25.84584 -23.49752 -22.61403 -21.48132 -20.93804 -20.27069 -19.39488 -17.97970 -17.61841 -17.19987 -16.88878 -16.62188 -15.76576 -15.33656 -15.17717 -14.89951 -14.53415 -14.17258 -13.98983 -13.78470 -13.62862 -13.39953 -13.33119 -13.07008 -12.47849 -12.31028 -12.26431 -11.98741 -11.86251 -11.17693 -10.96180 -10.82878 -10.54431 -10.27428 -10.16086 -9.88592 -9.84182 -9.02460 -8.72642 -8.58426 -8.24122 -7.56128 -6.58569 -4.32614 0.78425 1.92046 2.27411 2.58590 2.72604 2.99224 3.37965 3.39717 3.58431 3.67635 3.69373 3.74026 4.25401 4.40718 4.48428 4.70636 4.76291 4.91080 4.92147 5.03985 5.15004 5.18375 5.29404 5.45670 5.57238 5.67172 5.70173 6.08141 6.11242 6.34416 6.39807 6.55292 6.67928 6.73954 7.18886 7.25123 7.42830 7.67961 7.80789 8.04149 8.33481 8.50275 8.60779 9.35506 10.79086 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.002610 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.983063 B =10724.272729 C =11531.379570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.028 3.972 3 O -0.158 6.158 4 C -0.078 4.078 5 C 0.611 3.389 6 O -0.496 6.496 7 N -0.620 5.620 8 C 0.257 3.743 9 C -0.284 4.284 10 C 0.053 3.947 11 N -0.316 5.316 12 C 0.249 3.751 13 C -0.608 4.608 14 H 0.063 0.937 15 C 0.023 3.977 16 N -0.904 5.904 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.297 5.297 22 C -0.084 4.084 23 C -0.200 4.200 24 C 0.153 3.847 25 O -0.566 6.566 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.416 0.584 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.166 0.834 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -24.142 2.108 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 O -0.054 6.054 4 C -0.130 4.130 5 C 0.397 3.603 6 O -0.371 6.371 7 N -0.266 5.266 8 C 0.004 3.996 9 C -0.315 4.315 10 C -0.097 4.097 11 N -0.097 5.097 12 C 0.131 3.869 13 C -0.647 4.647 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.128 5.128 22 C -0.105 4.105 23 C -0.201 4.201 24 C 0.075 3.925 25 O -0.371 6.371 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.252 0.748 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.970 -20.945 1.354 25.212 hybrid contribution -0.039 -2.591 0.792 2.709 sum -14.009 -23.535 2.146 27.473 Atomic orbital electron populations 1.20454 0.84351 1.04689 1.04136 1.22394 0.94039 0.83416 1.02643 1.84045 1.15986 1.34333 1.71014 1.21810 0.81495 0.94333 1.15316 1.16343 0.86294 0.80447 0.77193 1.90832 1.21530 1.75593 1.49124 1.42247 1.08403 1.04362 1.71605 1.19024 0.87403 0.89375 1.03788 1.21538 0.90094 1.00127 1.19725 1.22571 0.97812 0.86961 1.02367 1.48824 1.01384 1.07683 1.51848 1.19785 0.95985 0.71837 0.99323 1.22102 1.32974 0.97362 1.12217 0.91830 1.25928 0.95815 0.94228 1.02208 1.70853 1.28814 1.39345 1.14964 0.83418 0.75886 0.76031 0.74290 1.20506 1.21220 1.21133 1.77377 1.00957 1.06905 1.27572 1.21688 0.98345 0.92036 0.98414 1.19936 0.93379 0.95209 1.11609 1.20204 0.87297 0.85063 0.99941 1.86500 1.32733 1.20184 1.97714 0.89313 0.89689 0.89066 0.74813 0.82032 0.81289 0.93511 0.94685 0.92272 0.81668 0.92338 0.92371 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.21 36.00 0.37 -0.01 16 2 C 0.03 0.26 7.31 -35.42 -0.26 0.00 16 3 O -0.16 -1.90 10.40 4.95 0.05 -1.84 16 4 C -0.08 -1.07 7.13 -36.80 -0.26 -1.34 16 5 C 0.61 10.05 7.75 -12.87 -0.10 9.95 16 6 O -0.50 -9.23 13.99 5.18 0.07 -9.16 16 7 N -0.62 -10.62 5.44 -12.33 -0.07 -10.69 16 8 C 0.26 5.38 8.11 -154.45 -1.25 4.13 16 9 C -0.28 -5.76 9.61 -39.83 -0.38 -6.14 16 10 C 0.05 1.07 11.43 -17.24 -0.20 0.87 16 11 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 12 C 0.25 6.35 5.57 -5.19 -0.03 6.32 16 13 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 14 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 16 N -0.90 -26.45 13.65 55.43 0.76 -25.70 16 17 Si 1.08 25.10 29.90 -169.99 -5.08 20.01 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 N -0.30 -7.06 12.42 31.43 0.39 -6.67 16 22 C -0.08 -1.07 9.97 -39.39 -0.39 -1.46 16 23 C -0.20 -2.00 6.10 -104.93 -0.64 -2.64 16 24 C 0.15 1.00 7.08 36.00 0.25 1.26 16 25 O -0.57 -4.30 13.08 -35.23 -0.46 -4.76 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.24 7.86 -51.93 -0.41 -0.17 16 29 H 0.42 6.18 8.58 -40.82 -0.35 5.83 16 30 H 0.16 3.14 5.90 -52.48 -0.31 2.83 16 31 H 0.17 2.77 8.06 -52.48 -0.42 2.34 16 32 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 33 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 34 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 35 H 0.17 2.14 7.97 -52.49 -0.42 1.72 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.38 0.91 9.12 45.56 0.42 1.32 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -35.84 339.88 -6.27 -42.11 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.51 Total: 5.39 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.31 Total: -6.09 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.85 Total: -50.79 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.34 Total: -15.76 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.84 -6.27 -42.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.292 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds