Wall clock time and date at job start Tue Mar 31 2020 08:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33947 * 125.61514 * 2 1 4 4 C 1.34913 * 109.38221 * 180.14911 * 3 2 1 5 5 C 1.46631 * 125.98955 * 179.82369 * 4 3 2 6 6 O 1.21708 * 120.00059 * 179.69723 * 5 4 3 7 7 N 1.34783 * 119.99605 * 359.69918 * 5 4 3 8 8 C 1.40072 * 119.99547 * 179.97438 * 7 5 4 9 9 C 1.40429 * 125.97960 * 359.97438 * 8 7 5 10 10 C 1.35237 * 107.86452 * 179.78256 * 9 8 7 11 11 N 1.34962 * 107.86631 * 0.38685 * 10 9 8 12 12 C 1.46500 * 125.97410 * 179.87309 * 11 10 9 13 13 C 1.50706 * 109.47299 * 124.71196 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.31237 * 125.97404 * 180.02562 * 8 7 5 22 22 C 1.36563 * 108.02502 * 359.56929 * 4 3 2 23 23 C 1.35131 * 125.61763 * 179.66697 * 2 1 3 24 24 C 1.50696 * 126.43967 * 0.04146 * 23 2 1 25 25 O 1.42897 * 109.47161 * 179.97438 * 24 23 2 26 26 H 1.08992 * 109.47117 * 270.33235 * 1 2 3 27 27 H 1.09005 * 109.46878 * 30.33893 * 1 2 3 28 28 H 1.08999 * 109.46689 * 150.33188 * 1 2 3 29 29 H 0.96995 * 119.99927 * 359.97438 * 7 5 4 30 30 H 1.08003 * 126.06149 * 0.02562 * 9 8 7 31 31 H 1.08004 * 126.06072 * 180.24187 * 10 9 8 32 32 H 1.09004 * 109.47078 * 4.71958 * 12 11 10 33 33 H 1.08993 * 109.47364 * 244.71729 * 12 11 10 34 34 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 35 35 H 1.07994 * 126.64736 * 180.24117 * 22 4 3 36 36 H 1.08998 * 109.47142 * 300.00030 * 24 23 2 37 37 H 1.09004 * 109.47309 * 59.99861 * 24 23 2 38 38 H 0.96702 * 114.00120 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2870 1.0889 0.0000 4 6 3.5823 0.7118 -0.0033 5 6 4.7413 1.6100 -0.0081 6 8 5.8680 1.1498 -0.0052 7 7 4.5588 2.9454 -0.0156 8 6 5.6659 3.8035 -0.0195 9 6 7.0141 3.4107 -0.0159 10 6 7.7725 4.5304 -0.0267 11 7 6.9411 5.5936 -0.0281 12 6 7.3449 7.0018 -0.0358 13 6 6.7011 7.7027 -1.2043 14 1 6.0553 7.1540 -1.8739 15 6 6.9364 9.0441 -1.4186 16 7 7.7185 9.7135 -0.6001 17 14 6.1377 9.9130 -2.8666 18 1 6.5423 11.3418 -2.8710 19 1 6.5753 9.2706 -4.1320 20 1 4.6606 9.8172 -2.7478 21 7 5.6246 5.1152 -0.0264 22 6 3.6251 -0.6532 0.0043 23 6 2.2939 -1.0985 0.0064 24 6 1.8297 -2.5321 0.0138 25 8 2.9647 -3.4003 0.0186 26 1 -0.3633 0.0060 1.0276 27 1 -0.3633 0.8870 -0.5191 28 1 -0.3633 -0.8930 -0.5087 29 1 3.6608 3.3122 -0.0182 30 1 7.3803 2.3947 -0.0100 31 1 8.8519 4.5672 -0.0308 32 1 8.4293 7.0684 -0.1249 33 1 7.0269 7.4761 0.8925 34 1 8.1331 9.2624 0.1520 35 1 4.5113 -1.2703 0.0077 36 1 1.2284 -2.7147 0.9044 37 1 1.2294 -2.7243 -0.8755 38 1 2.7404 -4.3410 0.0239 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417648667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:37 Heat of formation + Delta-G solvation = -15.566654 kcal Electronic energy + Delta-G solvation = -23499.052386 eV Core-core repulsion = 19730.310348 eV Total energy + Delta-G solvation = -3768.742038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.92306 -42.36012 -40.57817 -37.91571 -36.58470 -35.65636 -34.54904 -33.27012 -32.62827 -31.11195 -29.16620 -28.24313 -27.00124 -25.18059 -23.98442 -22.63170 -22.22933 -21.72926 -20.56098 -19.29899 -19.09390 -18.24594 -18.10831 -17.78934 -17.05906 -16.69501 -16.43281 -15.84608 -15.69065 -15.56249 -15.47691 -15.09469 -14.84106 -14.27537 -14.13894 -14.10471 -13.99494 -13.76735 -13.73496 -13.26101 -12.84067 -12.63797 -12.53616 -12.17807 -11.96237 -11.83409 -11.53961 -11.39657 -11.04832 -10.71084 -10.64816 -9.94485 -9.55869 -9.25280 -8.80010 -6.57667 -0.24233 0.89458 1.06146 1.16700 1.50043 1.54687 1.56519 1.61960 1.78403 2.18286 2.20774 2.47664 2.99543 3.20121 3.35666 3.70974 3.81854 3.97637 4.07368 4.26587 4.43434 4.49635 4.56862 4.58442 4.62545 4.67147 4.72839 4.75225 4.75627 4.79598 4.97940 5.06757 5.34584 5.51743 5.68361 5.71238 5.87566 6.07225 6.23058 6.38832 6.69141 6.85981 6.97092 7.17679 8.56838 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.002610 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.983063 B =10724.272729 C =11531.379570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.044 3.956 3 O -0.168 6.168 4 C -0.108 4.108 5 C 0.615 3.385 6 O -0.524 6.524 7 N -0.617 5.617 8 C 0.264 3.736 9 C -0.290 4.290 10 C 0.061 3.939 11 N -0.340 5.340 12 C 0.259 3.741 13 C -0.623 4.623 14 H 0.044 0.956 15 C -0.018 4.018 16 N -0.922 5.922 17 Si 1.120 2.880 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.276 1.276 21 N -0.341 5.341 22 C -0.083 4.083 23 C -0.215 4.215 24 C 0.152 3.848 25 O -0.594 6.594 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.425 0.575 30 H 0.172 0.828 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 -25.973 1.538 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 O -0.064 6.064 4 C -0.160 4.160 5 C 0.403 3.597 6 O -0.401 6.401 7 N -0.264 5.264 8 C 0.010 3.990 9 C -0.321 4.321 10 C -0.087 4.087 11 N -0.122 5.122 12 C 0.139 3.861 13 C -0.661 4.661 14 H 0.063 0.937 15 C -0.218 4.218 16 N -0.558 5.558 17 Si 0.940 3.060 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.201 1.201 21 N -0.171 5.171 22 C -0.104 4.104 23 C -0.216 4.216 24 C 0.075 3.925 25 O -0.403 6.403 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.262 0.738 30 H 0.189 0.811 31 H 0.224 0.776 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.174 0.826 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -16.049 -22.829 0.799 27.917 hybrid contribution 0.488 -2.246 1.020 2.515 sum -15.561 -25.075 1.819 29.567 Atomic orbital electron populations 1.20783 0.80654 1.06422 1.05841 1.23390 0.95784 0.82392 0.99272 1.84037 1.15363 1.35653 1.71378 1.21217 0.81713 0.93903 1.19130 1.16666 0.86982 0.80087 0.75942 1.90788 1.22950 1.75946 1.50401 1.42330 1.07956 1.04367 1.71787 1.19349 0.88866 0.89060 1.01739 1.21747 0.89950 1.00545 1.19834 1.23220 0.99392 0.85835 1.00288 1.48635 1.02047 1.07522 1.54026 1.19473 0.96138 0.72955 0.97498 1.22282 1.33045 0.97896 1.12878 0.93737 1.27279 0.95544 0.95055 1.03939 1.70946 1.29841 1.39538 1.15461 0.82884 0.75613 0.75413 0.72055 1.19857 1.19647 1.20116 1.77292 1.01545 1.08330 1.29980 1.21840 0.99681 0.91582 0.97311 1.20422 0.91986 0.97565 1.11640 1.20404 0.87146 0.82734 1.02258 1.86443 1.33945 1.22069 1.97871 0.87355 0.89145 0.86128 0.73764 0.81125 0.77580 0.92479 0.96385 0.92928 0.82601 0.89863 0.89874 0.74446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.21 71.23 0.73 0.28 16 2 C 0.04 0.72 7.31 24.97 0.18 0.90 16 3 O -0.17 -3.89 10.40 -5.19 -0.05 -3.94 16 4 C -0.11 -3.01 7.13 24.07 0.17 -2.83 16 5 C 0.61 20.66 7.75 86.43 0.67 21.33 16 6 O -0.52 -19.95 13.99 -4.37 -0.06 -20.01 16 7 N -0.62 -21.61 5.44 -311.13 -1.69 -23.30 16 8 C 0.26 11.26 8.11 133.35 1.08 12.34 16 9 C -0.29 -11.80 9.61 22.11 0.21 -11.59 16 10 C 0.06 2.45 11.43 83.52 0.95 3.41 16 11 N -0.34 -16.43 3.67 -351.84 -1.29 -17.72 16 12 C 0.26 13.48 5.57 85.64 0.48 13.96 16 13 C -0.62 -35.95 9.24 25.60 0.24 -35.71 16 14 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 15 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 16 N -0.92 -54.25 13.65 21.45 0.29 -53.96 16 17 Si 1.12 50.22 29.90 68.60 2.05 52.27 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 N -0.34 -16.60 12.42 -54.48 -0.68 -17.28 16 22 C -0.08 -2.10 9.97 22.40 0.22 -1.87 16 23 C -0.21 -3.86 6.10 -20.06 -0.12 -3.98 16 24 C 0.15 1.50 7.08 71.23 0.50 2.00 16 25 O -0.59 -7.77 13.08 -148.98 -1.95 -9.72 16 26 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.09 0.47 8.14 -2.38 -0.02 0.46 16 28 H 0.12 0.02 7.86 -2.39 -0.02 0.00 16 29 H 0.42 12.96 8.58 -92.71 -0.80 12.17 16 30 H 0.17 6.64 5.90 -2.91 -0.02 6.63 16 31 H 0.21 6.43 8.06 -2.91 -0.02 6.40 16 32 H 0.06 2.83 7.94 -2.39 -0.02 2.81 16 33 H 0.02 1.00 8.00 -2.39 -0.02 0.98 16 34 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 35 H 0.16 4.13 7.97 -2.91 -0.02 4.10 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.40 0.96 9.12 -74.06 -0.68 0.29 16 Total: -1.00 -79.20 339.88 2.16 -77.04 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.24 Total: 18.96 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.78 Total: -2.33 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.37 Total: -112.26 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -2.06 Total: -33.67 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -79.20 2.16 -77.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.469 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds