Wall clock time and date at job start Tue Mar 31 2020 08:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33021 * 1 3 3 C 1.50703 * 119.99577 * 2 1 4 4 C 1.53000 * 109.46880 * 94.72889 * 3 2 1 5 5 C 1.47060 * 120.00239 * 179.72717 * 2 1 3 6 6 O 1.21637 * 120.00003 * 0.27599 * 5 2 1 7 7 N 1.34775 * 120.00271 * 180.27603 * 5 2 1 8 8 C 1.40045 * 120.00125 * 174.60997 * 7 5 2 9 9 C 1.38675 * 120.10193 * 340.96402 * 8 7 5 10 10 C 1.38240 * 120.00679 * 179.97438 * 9 8 7 11 11 C 1.38303 * 120.21276 * 359.97438 * 10 9 8 12 12 C 1.38203 * 120.20433 * 0.02733 * 11 10 9 13 13 C 1.38779 * 119.99198 * 359.70223 * 12 11 10 14 14 S 1.76199 * 120.10932 * 180.29427 * 13 12 11 15 15 C 1.81397 * 102.99717 * 354.00084 * 14 13 12 16 16 H 1.09003 * 109.47478 * 51.40745 * 15 14 13 17 17 C 1.52995 * 109.47495 * 291.39937 * 15 14 13 18 18 C 1.50699 * 109.46815 * 171.40016 * 15 14 13 19 19 H 1.07995 * 120.00473 * 0.02562 * 18 15 14 20 20 C 1.37881 * 119.99962 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00177 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00217 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47099 * 89.99744 * 22 20 18 24 24 H 1.48495 * 109.47388 * 209.99924 * 22 20 18 25 25 H 1.48501 * 109.46797 * 330.00064 * 22 20 18 26 26 H 1.07994 * 119.99705 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00119 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47071 * 214.72253 * 3 2 1 29 29 H 1.08994 * 109.47645 * 334.72594 * 3 2 1 30 30 H 1.09004 * 109.47241 * 299.99531 * 4 3 2 31 31 H 1.08997 * 109.47728 * 59.99451 * 4 3 2 32 32 H 1.09004 * 109.46945 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99531 * 354.61014 * 7 5 2 34 34 H 1.08002 * 119.99828 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.89921 * 179.97438 * 10 9 8 36 36 H 1.07999 * 119.90169 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.00115 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47306 * 302.23600 * 17 15 14 39 39 H 1.09005 * 109.47116 * 62.22983 * 17 15 14 40 40 H 1.09002 * 109.47627 * 182.22924 * 17 15 14 41 41 H 0.97000 * 120.00184 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0836 1.3052 0.0000 4 6 2.4416 1.6874 1.4376 5 6 2.0656 -1.2735 0.0061 6 8 1.4574 -2.3270 0.0060 7 7 3.4133 -1.2735 0.0117 8 6 4.1131 -2.4807 0.1314 9 6 3.4766 -3.6070 0.6308 10 6 4.1691 -4.7977 0.7476 11 6 5.4967 -4.8709 0.3672 12 6 6.1397 -3.7538 -0.1316 13 6 5.4510 -2.5556 -0.2578 14 16 6.2655 -1.1315 -0.9006 15 6 7.9851 -1.6848 -1.0657 16 1 8.0134 -2.6229 -1.6201 17 6 8.5890 -1.8953 0.3242 18 6 8.7800 -0.6400 -1.8057 19 1 8.2990 0.2664 -2.1426 20 6 10.1215 -0.8412 -2.0528 21 7 10.7075 -1.9446 -1.6421 22 14 11.1071 0.4541 -2.9694 23 1 11.6848 1.4165 -1.9971 24 1 12.2028 -0.2018 -3.7272 25 1 10.2170 1.1776 -3.9126 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.9968 1.1976 -0.5854 29 1 1.4606 2.0845 -0.4387 30 1 1.5284 1.7950 2.0231 31 1 3.0646 0.9081 1.8764 32 1 2.9869 2.6312 1.4376 33 1 3.8985 -0.4374 -0.0672 34 1 2.4398 -3.5539 0.9285 35 1 3.6718 -5.6738 1.1372 36 1 6.0328 -5.8038 0.4602 37 1 7.1766 -3.8146 -0.4273 38 1 8.5247 -0.9674 0.8926 39 1 8.0384 -2.6790 0.8446 40 1 9.6339 -2.1895 0.2257 41 1 11.6514 -2.0860 -1.8156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520976227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:08 Heat of formation + Delta-G solvation = 0.592241 kcal Electronic energy + Delta-G solvation = -22304.318130 eV Core-core repulsion = 19082.570009 eV Total energy + Delta-G solvation = -3221.748122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55844 -38.25191 -35.63260 -34.77392 -34.12367 -31.12432 -30.40034 -29.94919 -29.32925 -25.41459 -24.50980 -23.33458 -22.66760 -21.76426 -21.07428 -19.14747 -17.88984 -16.91499 -16.72978 -16.14932 -15.24105 -15.23715 -14.99885 -14.50317 -14.26212 -13.97978 -13.87247 -13.48543 -13.36900 -13.05477 -12.73932 -12.62871 -12.36262 -12.00412 -11.78471 -11.60943 -11.32370 -11.15082 -11.07176 -11.05021 -10.64753 -10.49298 -10.41653 -10.08690 -9.67875 -9.52465 -9.48022 -9.12673 -8.98778 -8.55351 -7.93357 -6.58349 -6.26056 -4.35699 1.07830 1.67497 1.80776 2.40694 3.14983 3.17441 3.19086 3.25983 3.29852 3.59144 4.15483 4.25938 4.51174 4.55683 4.92902 5.06097 5.13508 5.29158 5.35422 5.38809 5.42278 5.60152 5.67293 5.75492 5.82904 5.85587 6.00570 6.14491 6.20470 6.24077 6.50537 6.51913 6.62280 6.69581 6.73693 6.76439 6.89915 7.26166 7.34012 7.51951 7.55706 7.72608 7.96560 8.11497 8.63145 9.28793 10.79741 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.004261 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.791318 B = 6570.122500 C = 8014.517405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.174 4.174 3 C -0.094 4.094 4 C -0.151 4.151 5 C 0.550 3.450 6 O -0.528 6.528 7 N -0.651 5.651 8 C 0.149 3.851 9 C -0.128 4.128 10 C -0.121 4.121 11 C -0.122 4.122 12 C -0.113 4.113 13 C -0.094 4.094 14 S -0.180 6.180 15 C 0.102 3.898 16 H 0.052 0.948 17 C -0.145 4.145 18 C -0.511 4.511 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.886 5.886 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.271 1.271 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.039 0.961 39 H 0.021 0.979 40 H 0.096 0.904 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 2.531 5.515 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.177 4.177 3 C -0.131 4.131 4 C -0.208 4.208 5 C 0.340 3.660 6 O -0.406 6.406 7 N -0.295 5.295 8 C 0.048 3.952 9 C -0.150 4.150 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.137 4.137 13 C -0.210 4.210 14 S 0.067 5.933 15 C -0.025 4.025 16 H 0.070 0.930 17 C -0.205 4.205 18 C -0.551 4.551 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.523 5.523 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.196 1.196 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.115 0.885 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.569 2.951 5.189 16.674 hybrid contribution 1.445 -0.237 -0.247 1.485 sum -14.124 2.713 4.943 15.208 Atomic orbital electron populations 1.24599 0.94369 1.03327 0.91463 1.21622 0.95777 0.93840 1.06490 1.20655 1.00435 0.93609 0.98433 1.21796 1.01773 1.01941 0.95339 1.18539 0.81644 0.89680 0.76124 1.90678 1.68333 1.32425 1.49208 1.43504 1.06386 1.09223 1.70347 1.17301 0.90297 0.86627 1.00995 1.21512 1.01762 0.91495 1.00199 1.20965 0.94390 0.97412 1.01544 1.21038 0.94852 0.98079 1.00289 1.21298 1.00657 0.91400 1.00365 1.21712 0.95535 0.99387 1.04332 1.84970 1.13335 1.16913 1.78043 1.21086 0.83944 0.99929 0.97537 0.92997 1.22157 1.04019 0.98926 0.95380 1.20614 0.93745 1.03987 1.36709 0.91499 1.24885 0.97104 0.95906 0.95409 1.69854 1.11892 1.25078 1.45471 0.86349 0.79509 0.81054 0.79753 1.20335 1.20917 1.19590 0.86597 0.86620 0.90646 0.90184 0.92443 0.92365 0.91734 0.74607 0.83013 0.86224 0.86224 0.84386 0.94185 0.95960 0.88546 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 13.90 28.92 0.40 -0.49 16 2 C -0.17 -1.93 5.25 -102.86 -0.54 -2.47 16 3 C -0.09 -0.86 5.60 -27.88 -0.16 -1.02 16 4 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 5 C 0.55 8.17 7.60 -12.68 -0.10 8.07 16 6 O -0.53 -9.03 13.09 5.24 0.07 -8.96 16 7 N -0.65 -10.25 5.19 -10.79 -0.06 -10.30 16 8 C 0.15 2.67 6.52 -83.46 -0.54 2.13 16 9 C -0.13 -2.18 8.79 -39.42 -0.35 -2.52 16 10 C -0.12 -1.87 10.04 -39.56 -0.40 -2.27 16 11 C -0.12 -1.96 10.04 -39.57 -0.40 -2.36 16 12 C -0.11 -2.12 8.01 -39.39 -0.32 -2.43 16 13 C -0.09 -1.83 6.04 -38.89 -0.24 -2.07 16 14 S -0.18 -3.75 19.87 -107.50 -2.14 -5.89 16 15 C 0.10 2.46 1.98 -27.89 -0.06 2.41 16 16 H 0.05 1.34 6.94 -51.92 -0.36 0.98 16 17 C -0.15 -3.34 8.57 37.16 0.32 -3.02 16 18 C -0.51 -13.39 8.58 -34.44 -0.30 -13.68 16 19 H 0.07 1.76 7.71 -52.49 -0.40 1.35 16 20 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 21 N -0.89 -23.70 11.31 55.43 0.63 -23.07 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.12 1.12 7.49 -52.49 -0.39 0.73 16 27 H 0.12 0.70 8.02 -52.49 -0.42 0.28 16 28 H 0.07 0.76 6.88 -51.93 -0.36 0.40 16 29 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.42 6.13 5.68 -40.82 -0.23 5.90 16 34 H 0.15 2.57 5.37 -52.49 -0.28 2.28 16 35 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.14 2.75 4.85 -52.49 -0.25 2.50 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.46 5.86 -51.93 -0.30 0.15 16 40 H 0.10 2.41 6.02 -51.93 -0.31 2.10 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -28.56 346.24 -9.09 -37.66 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.41 Total: 9.01 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.39 Total: -18.93 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.57 Total: -33.38 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.14 Total: -5.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.56 -9.09 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520976227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.247 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds