Wall clock time and date at job start Tue Mar 31 2020 08:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33021 * 1 3 3 C 1.50703 * 119.99577 * 2 1 4 4 C 1.53000 * 109.46880 * 94.72889 * 3 2 1 5 5 C 1.47060 * 120.00239 * 179.72717 * 2 1 3 6 6 O 1.21637 * 120.00003 * 0.27599 * 5 2 1 7 7 N 1.34775 * 120.00271 * 180.27603 * 5 2 1 8 8 C 1.40045 * 120.00125 * 174.60997 * 7 5 2 9 9 C 1.38675 * 120.10193 * 340.96402 * 8 7 5 10 10 C 1.38240 * 120.00679 * 179.97438 * 9 8 7 11 11 C 1.38303 * 120.21276 * 359.97438 * 10 9 8 12 12 C 1.38203 * 120.20433 * 0.02733 * 11 10 9 13 13 C 1.38779 * 119.99198 * 359.70223 * 12 11 10 14 14 S 1.76199 * 120.10932 * 180.29427 * 13 12 11 15 15 C 1.81397 * 102.99717 * 354.00084 * 14 13 12 16 16 H 1.09003 * 109.47478 * 51.40745 * 15 14 13 17 17 C 1.52995 * 109.47495 * 291.39937 * 15 14 13 18 18 C 1.50699 * 109.46815 * 171.40016 * 15 14 13 19 19 H 1.07995 * 120.00473 * 0.02562 * 18 15 14 20 20 C 1.37881 * 119.99962 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00177 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00217 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47099 * 89.99744 * 22 20 18 24 24 H 1.48495 * 109.47388 * 209.99924 * 22 20 18 25 25 H 1.48501 * 109.46797 * 330.00064 * 22 20 18 26 26 H 1.07994 * 119.99705 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00119 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47071 * 214.72253 * 3 2 1 29 29 H 1.08994 * 109.47645 * 334.72594 * 3 2 1 30 30 H 1.09004 * 109.47241 * 299.99531 * 4 3 2 31 31 H 1.08997 * 109.47728 * 59.99451 * 4 3 2 32 32 H 1.09004 * 109.46945 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99531 * 354.61014 * 7 5 2 34 34 H 1.08002 * 119.99828 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.89921 * 179.97438 * 10 9 8 36 36 H 1.07999 * 119.90169 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.00115 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47306 * 302.23600 * 17 15 14 39 39 H 1.09005 * 109.47116 * 62.22983 * 17 15 14 40 40 H 1.09002 * 109.47627 * 182.22924 * 17 15 14 41 41 H 0.97000 * 120.00184 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0836 1.3052 0.0000 4 6 2.4416 1.6874 1.4376 5 6 2.0656 -1.2735 0.0061 6 8 1.4574 -2.3270 0.0060 7 7 3.4133 -1.2735 0.0117 8 6 4.1131 -2.4807 0.1314 9 6 3.4766 -3.6070 0.6308 10 6 4.1691 -4.7977 0.7476 11 6 5.4967 -4.8709 0.3672 12 6 6.1397 -3.7538 -0.1316 13 6 5.4510 -2.5556 -0.2578 14 16 6.2655 -1.1315 -0.9006 15 6 7.9851 -1.6848 -1.0657 16 1 8.0134 -2.6229 -1.6201 17 6 8.5890 -1.8953 0.3242 18 6 8.7800 -0.6400 -1.8057 19 1 8.2990 0.2664 -2.1426 20 6 10.1215 -0.8412 -2.0528 21 7 10.7075 -1.9446 -1.6421 22 14 11.1071 0.4541 -2.9694 23 1 11.6848 1.4165 -1.9971 24 1 12.2028 -0.2018 -3.7272 25 1 10.2170 1.1776 -3.9126 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.9968 1.1976 -0.5854 29 1 1.4606 2.0845 -0.4387 30 1 1.5284 1.7950 2.0231 31 1 3.0646 0.9081 1.8764 32 1 2.9869 2.6312 1.4376 33 1 3.8985 -0.4374 -0.0672 34 1 2.4398 -3.5539 0.9285 35 1 3.6718 -5.6738 1.1372 36 1 6.0328 -5.8038 0.4602 37 1 7.1766 -3.8146 -0.4273 38 1 8.5247 -0.9674 0.8926 39 1 8.0384 -2.6790 0.8446 40 1 9.6339 -2.1895 0.2257 41 1 11.6514 -2.0860 -1.8156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520976227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:07 Heat of formation + Delta-G solvation = -13.339444 kcal Electronic energy + Delta-G solvation = -22304.922254 eV Core-core repulsion = 19082.570009 eV Total energy + Delta-G solvation = -3222.352245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76072 -39.53352 -36.51692 -36.31127 -35.74608 -32.83516 -31.59207 -31.14261 -30.61332 -27.39622 -25.52119 -24.27156 -23.95636 -23.43564 -22.53233 -20.27835 -19.28602 -18.23209 -18.05585 -17.75914 -16.98146 -16.42729 -16.24758 -15.92442 -15.42368 -15.24654 -15.01314 -14.93544 -14.49941 -14.28825 -14.20732 -13.77115 -13.72324 -13.29010 -13.10051 -13.02106 -12.87486 -12.79020 -12.47902 -12.27296 -12.16227 -11.87904 -11.84790 -11.60578 -11.37815 -10.84159 -10.79363 -10.60728 -10.47322 -10.39860 -9.28436 -8.25325 -8.16599 -6.41738 0.01542 0.31329 0.62022 0.80959 1.41909 1.43041 1.53697 1.79909 2.04179 2.11040 2.38057 2.80491 3.05001 3.53569 3.81839 3.90277 4.13599 4.25226 4.37173 4.45222 4.48256 4.49367 4.58827 4.67921 4.76057 4.80157 4.86178 4.89766 4.96788 5.10177 5.13033 5.27825 5.31397 5.33585 5.40082 5.42378 5.50330 5.55794 5.57537 5.74527 6.00817 6.02371 6.32283 6.60625 6.94049 7.25996 8.80680 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.004261 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.791318 B = 6570.122500 C = 8014.517405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.200 4.200 3 C -0.089 4.089 4 C -0.150 4.150 5 C 0.545 3.455 6 O -0.556 6.556 7 N -0.654 5.654 8 C 0.145 3.855 9 C -0.138 4.138 10 C -0.106 4.106 11 C -0.121 4.121 12 C -0.127 4.127 13 C -0.119 4.119 14 S -0.174 6.174 15 C 0.099 3.901 16 H 0.025 0.975 17 C -0.129 4.129 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.028 3.972 21 N -0.909 5.909 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.269 1.269 26 H 0.108 0.892 27 H 0.155 0.845 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.417 0.583 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.763 3.159 5.915 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.202 4.202 3 C -0.126 4.126 4 C -0.207 4.207 5 C 0.338 3.662 6 O -0.437 6.437 7 N -0.297 5.297 8 C 0.043 3.957 9 C -0.160 4.160 10 C -0.127 4.127 11 C -0.141 4.141 12 C -0.152 4.152 13 C -0.235 4.235 14 S 0.072 5.928 15 C -0.029 4.029 16 H 0.043 0.957 17 C -0.189 4.189 18 C -0.571 4.571 19 H 0.078 0.922 20 C -0.174 4.174 21 N -0.547 5.547 22 Si 0.792 3.208 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.126 0.874 27 H 0.173 0.827 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.408 3.582 5.599 18.634 hybrid contribution 1.823 -0.530 -0.328 1.926 sum -15.585 3.052 5.272 16.733 Atomic orbital electron populations 1.24941 0.93499 1.04825 0.87356 1.21590 0.96360 0.92666 1.09626 1.20653 1.00100 0.93357 0.98509 1.21800 1.02126 1.01543 0.95274 1.19246 0.81165 0.90922 0.74893 1.90644 1.68585 1.33794 1.50661 1.43601 1.06946 1.08649 1.70501 1.17507 0.89875 0.87875 1.00426 1.21720 1.02017 0.91837 1.00383 1.21391 0.93906 0.97984 0.99416 1.21334 0.95316 0.98209 0.99233 1.21299 1.00108 0.92393 1.01353 1.21706 0.96329 0.98953 1.06466 1.84676 1.10990 1.18005 1.79164 1.20842 0.86355 0.98338 0.97321 0.95703 1.21957 1.02761 0.99095 0.95088 1.20871 0.94553 1.04281 1.37422 0.92166 1.25662 0.97966 0.97735 0.96014 1.69962 1.12183 1.26434 1.46089 0.85402 0.78034 0.78730 0.78640 1.19608 1.20407 1.19347 0.87362 0.82740 0.92136 0.87552 0.91130 0.94423 0.90956 0.74351 0.82768 0.82503 0.83333 0.86234 0.94456 0.94503 0.90700 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 13.90 66.66 0.93 -0.10 16 2 C -0.20 -4.09 5.25 -18.71 -0.10 -4.19 16 3 C -0.09 -1.48 5.60 29.85 0.17 -1.32 16 4 C -0.15 -2.42 9.89 71.98 0.71 -1.71 16 5 C 0.55 15.97 7.60 86.56 0.66 16.63 16 6 O -0.56 -18.77 13.09 -4.15 -0.05 -18.83 16 7 N -0.65 -20.75 5.19 -306.28 -1.59 -22.34 16 8 C 0.14 5.21 6.52 38.25 0.25 5.45 16 9 C -0.14 -4.55 8.79 22.37 0.20 -4.35 16 10 C -0.11 -3.02 10.04 22.29 0.22 -2.80 16 11 C -0.12 -3.71 10.04 22.28 0.22 -3.48 16 12 C -0.13 -4.84 8.01 22.39 0.18 -4.66 16 13 C -0.12 -4.73 6.04 22.71 0.14 -4.59 16 14 S -0.17 -7.51 19.87 -56.49 -1.12 -8.63 16 15 C 0.10 4.97 1.98 29.85 0.06 5.02 16 16 H 0.03 1.36 6.94 -2.39 -0.02 1.34 16 17 C -0.13 -6.16 8.57 71.98 0.62 -5.54 16 18 C -0.53 -28.63 8.58 25.60 0.22 -28.41 16 19 H 0.06 3.24 7.71 -2.91 -0.02 3.22 16 20 C 0.03 1.49 5.30 84.66 0.45 1.94 16 21 N -0.91 -49.70 11.31 21.45 0.24 -49.46 16 22 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H 0.11 1.84 7.49 -2.91 -0.02 1.82 16 27 H 0.15 1.13 8.02 -2.91 -0.02 1.10 16 28 H 0.06 1.18 6.88 -2.39 -0.02 1.17 16 29 H 0.11 1.21 8.01 -2.39 -0.02 1.19 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.42 12.60 5.68 -92.71 -0.53 12.07 16 34 H 0.16 5.07 5.37 -2.91 -0.02 5.05 16 35 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.12 4.96 4.85 -2.91 -0.01 4.95 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.59 5.86 -2.38 -0.01 1.57 16 40 H 0.07 3.88 6.02 -2.39 -0.01 3.87 16 41 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -63.13 346.24 4.94 -58.19 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.52 Total: 29.28 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.92 Total: -32.10 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -1.35 Total: -71.80 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.12 Total: -8.63 kcal Total: -63.13 4.94 -58.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520976227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.847 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds