Wall clock time and date at job start Tue Mar 31 2020 08:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47223 * 2 1 4 4 N 1.46493 * 109.47205 * 120.00005 * 2 1 3 5 5 C 1.34783 * 120.00266 * 299.99845 * 4 2 1 6 6 O 1.21554 * 119.99505 * 0.02562 * 5 4 2 7 7 C 1.47857 * 120.00551 * 180.02562 * 5 4 2 8 8 C 1.39674 * 120.09834 * 0.02598 * 7 5 4 9 9 C 1.38047 * 120.04029 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.23812 * 359.67645 * 9 8 7 11 11 C 1.39179 * 120.20540 * 0.60009 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.69520 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47076 * 59.99906 * 17 15 13 19 19 H 1.48496 * 109.46794 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46962 * 299.99839 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.42658 * 11 10 9 22 22 C 1.53003 * 109.47311 * 240.00096 * 2 1 3 23 23 C 1.52996 * 117.49886 * 123.74602 * 22 2 1 24 24 C 1.53004 * 117.49865 * 55.08127 * 22 2 1 25 25 H 1.08998 * 109.47202 * 300.00085 * 1 2 3 26 26 H 1.08996 * 109.46977 * 60.00458 * 1 2 3 27 27 H 1.08996 * 109.46715 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47172 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46510 * 300.00193 * 3 2 1 30 30 H 1.08998 * 109.47101 * 59.99853 * 3 2 1 31 31 H 0.97000 * 120.00523 * 120.00548 * 4 2 1 32 32 H 1.08002 * 119.98410 * 359.97438 * 8 7 5 33 33 H 1.07999 * 119.87976 * 179.97438 * 9 8 7 34 34 H 1.08006 * 119.89818 * 180.31471 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 37 37 H 1.08997 * 115.54541 * 269.41751 * 22 2 1 38 38 H 1.09000 * 117.50013 * 359.97438 * 23 22 2 39 39 H 1.09002 * 117.50153 * 145.02525 * 23 22 2 40 40 H 1.08992 * 117.49723 * 214.98117 * 24 22 2 41 41 H 1.08997 * 117.49776 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6928 -0.2301 2.4203 6 8 0.9936 0.7579 2.5318 7 6 2.1861 -0.9267 3.6276 8 6 2.9901 -2.0619 3.5019 9 6 3.4505 -2.7111 4.6299 10 6 3.1245 -2.2383 5.8866 11 6 2.3192 -1.1114 6.0236 12 16 1.8999 -0.5174 7.6286 13 6 0.3442 -1.3135 7.8527 14 1 -0.0141 -2.0164 7.1151 15 6 -0.4206 -1.0377 8.9769 16 7 0.0161 -0.1816 9.8761 17 14 -2.0698 -1.8824 9.2148 18 1 -1.8695 -3.3527 9.2691 19 1 -2.6847 -1.4188 10.4845 20 1 -2.9663 -1.5465 8.0796 21 6 1.8511 -0.4521 4.8945 22 6 2.0401 -0.7212 -1.2493 23 6 2.9863 0.0487 -2.1726 24 6 1.5432 -0.2200 -2.6068 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.5761 -1.4792 1.1072 32 1 3.2518 -2.4321 2.5216 33 1 4.0716 -3.5889 4.5297 34 1 3.4918 -2.7475 6.7654 35 1 -0.5188 0.0115 10.6619 36 1 1.2295 0.4250 4.9977 37 1 2.2062 -1.7928 -1.1385 38 1 3.2452 1.0692 -1.8904 39 1 3.7748 -0.5164 -2.6698 40 1 1.3829 -0.9617 -3.3891 41 1 0.8532 0.6238 -2.6099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526231377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:59 Heat of formation + Delta-G solvation = -10.243790 kcal Electronic energy + Delta-G solvation = -22027.579511 eV Core-core repulsion = 18805.361504 eV Total energy + Delta-G solvation = -3222.218007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60237 -39.81719 -38.64915 -35.48134 -34.66378 -33.05384 -31.92532 -31.03006 -28.42266 -27.75284 -25.76937 -24.29778 -23.56161 -23.02297 -21.42070 -20.32711 -19.91641 -18.95739 -17.56903 -17.20939 -16.94199 -16.67025 -16.05652 -15.96189 -15.71562 -15.20337 -15.17714 -14.76235 -14.61132 -14.40993 -13.86832 -13.65186 -13.30668 -13.23821 -13.05239 -12.97212 -12.96047 -12.60659 -12.48142 -12.38847 -11.95938 -11.85159 -11.75580 -11.32088 -11.23444 -11.07482 -10.87158 -10.64650 -10.17838 -9.88753 -9.69523 -8.81515 -8.39995 -6.20225 -0.16528 0.26049 1.28521 1.37975 1.44087 1.64343 1.83327 2.04657 2.24202 2.81089 2.92878 2.93651 3.41115 3.54965 3.70485 3.94774 3.97543 4.02360 4.05347 4.12185 4.25703 4.36526 4.42062 4.48906 4.63871 4.69698 4.71481 4.85798 4.91231 4.92049 4.94543 5.05317 5.14969 5.22105 5.31357 5.32470 5.34322 5.37324 5.38595 5.50948 5.58667 5.87230 6.14531 6.56271 7.00037 7.21399 8.66929 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.003205 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.973684 B = 8734.877658 C = 9300.595321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.204 3.796 3 C -0.164 4.164 4 N -0.701 5.701 5 C 0.563 3.437 6 O -0.570 6.570 7 C -0.157 4.157 8 C -0.064 4.064 9 C -0.121 4.121 10 C -0.065 4.065 11 C -0.129 4.129 12 S -0.096 6.096 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.271 1.271 21 C -0.046 4.046 22 C -0.164 4.164 23 C -0.176 4.176 24 C -0.165 4.165 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.414 0.586 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.134 0.866 35 H 0.274 0.726 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -6.139 -25.682 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.119 3.881 3 C -0.221 4.221 4 N -0.354 5.354 5 C 0.352 3.648 6 O -0.450 6.450 7 C -0.162 4.162 8 C -0.083 4.083 9 C -0.140 4.140 10 C -0.086 4.086 11 C -0.240 4.240 12 S 0.138 5.862 13 C -0.684 4.684 14 H 0.085 0.915 15 C -0.186 4.186 16 N -0.543 5.543 17 Si 0.813 3.187 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.068 4.068 22 C -0.182 4.182 23 C -0.213 4.213 24 C -0.202 4.202 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.252 0.748 32 H 0.190 0.810 33 H 0.193 0.807 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.558 -4.615 -24.692 26.232 hybrid contribution -1.569 -0.933 0.092 1.828 sum 5.989 -5.549 -24.600 25.919 Atomic orbital electron populations 1.22180 0.94880 1.02275 1.02519 1.19815 0.93489 0.91829 0.82982 1.22304 1.01462 0.95835 1.02536 1.45874 1.53393 1.32212 1.03943 1.18317 0.79335 0.83263 0.83923 1.90711 1.39307 1.27766 1.87255 1.20035 1.04183 0.99793 0.92181 1.21718 0.93613 0.92082 1.00860 1.21552 1.00718 1.01245 0.90489 1.22067 0.94099 0.92764 0.99622 1.22489 1.02627 1.00233 0.98645 1.83472 1.25777 1.65530 1.11397 1.23028 1.05419 1.29294 1.10658 0.91503 1.26012 1.02459 0.95668 0.94415 1.70101 1.39722 1.33591 1.10845 0.85107 0.76721 0.78928 0.77948 1.18433 1.19501 1.19583 1.21615 0.95751 0.97754 0.91646 1.22360 1.06335 0.99871 0.89670 1.23275 0.93710 1.01987 1.02326 1.23061 0.97487 1.03651 0.96014 0.93787 0.90188 0.92237 0.91542 0.90296 0.93646 0.74782 0.80974 0.80719 0.84776 0.91670 0.88066 0.85766 0.88300 0.87341 0.87148 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.18 71.98 0.59 -2.95 16 2 C 0.20 3.87 0.92 3.61 0.00 3.88 16 3 C -0.16 -3.43 6.97 71.98 0.50 -2.93 16 4 N -0.70 -14.66 5.06 -425.74 -2.15 -16.81 16 5 C 0.56 17.73 7.19 86.79 0.62 18.35 16 6 O -0.57 -22.78 12.55 -3.89 -0.05 -22.83 16 7 C -0.16 -5.16 5.87 -20.11 -0.12 -5.28 16 8 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 9 C -0.12 -2.94 10.02 22.21 0.22 -2.72 16 10 C -0.06 -2.27 9.79 22.48 0.22 -2.05 16 11 C -0.13 -5.77 5.45 22.65 0.12 -5.64 16 12 S -0.10 -5.36 21.40 -56.49 -1.21 -6.56 16 13 C -0.54 -31.96 9.46 67.94 0.64 -31.32 16 14 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 15 C 0.02 1.15 5.49 84.84 0.47 1.61 16 16 N -0.91 -55.33 13.22 21.64 0.29 -55.05 16 17 Si 0.99 45.11 29.55 68.60 2.03 47.14 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C -0.05 -1.97 9.34 22.70 0.21 -1.76 16 22 C -0.16 -1.95 5.34 -10.79 -0.06 -2.01 16 23 C -0.18 -1.74 9.51 30.62 0.29 -1.45 16 24 C -0.16 -1.62 9.40 30.62 0.29 -1.34 16 25 H 0.04 1.32 6.16 -2.39 -0.01 1.31 16 26 H 0.08 1.43 7.00 -2.39 -0.02 1.41 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.26 7.23 -2.39 -0.02 1.25 16 29 H 0.08 1.34 7.18 -2.38 -0.02 1.32 16 30 H 0.04 1.31 6.16 -2.39 -0.01 1.30 16 31 H 0.41 5.62 6.43 -92.71 -0.60 5.02 16 32 H 0.17 2.08 6.40 -2.91 -0.02 2.06 16 33 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 35 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.10 5.00 7.65 -2.91 -0.02 4.98 16 37 H 0.12 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.10 1.10 5.82 -2.39 -0.01 1.08 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 1.00 7.08 -2.39 -0.02 0.98 16 Total: -1.00 -77.15 347.36 3.58 -73.57 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.45 Total: 17.41 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.22 Total: -36.87 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.87 Total: -71.85 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.21 Total: -6.56 kcal Total: -77.15 3.58 -73.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526231377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.322 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds