Wall clock time and date at job start Tue Mar 31 2020 08:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47726 * 15.38278 * 3 2 1 5 5 C 1.46503 * 119.99964 * 270.00376 * 4 3 2 6 6 C 1.50703 * 109.46803 * 276.69812 * 5 4 3 7 7 O 1.20831 * 120.00084 * 359.97438 * 6 5 4 8 8 O 1.34225 * 119.99973 * 180.02562 * 6 5 4 9 9 C 1.34775 * 119.99785 * 89.99733 * 4 3 2 10 10 O 1.21598 * 120.00301 * 6.55726 * 9 4 3 11 11 C 1.47433 * 119.99653 * 186.55543 * 9 4 3 12 12 C 1.41286 * 126.41578 * 332.38169 * 11 9 4 13 13 N 1.30449 * 108.02313 * 179.72065 * 12 11 9 14 14 N 1.39933 * 108.89448 * 0.41358 * 13 12 11 15 15 C 1.46507 * 125.75099 * 179.84371 * 14 13 12 16 16 C 1.50696 * 109.47144 * 269.69316 * 15 14 13 17 17 H 1.08000 * 120.00038 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00157 * 179.72777 * 16 15 14 19 19 N 1.31511 * 119.99529 * 0.27514 * 18 16 15 20 20 Si 1.86800 * 120.00136 * 180.27339 * 18 16 15 21 21 H 1.48498 * 109.47003 * 59.99993 * 20 18 16 22 22 H 1.48499 * 109.46776 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46914 * 299.99831 * 20 18 16 24 24 C 1.34258 * 108.49311 * 359.58466 * 14 13 12 25 25 C 1.50698 * 126.29218 * 180.22468 * 24 14 13 26 26 H 4.40647 * 5.51459 * 180.02562 * 4 1 2 27 27 H 1.09009 * 109.47055 * 255.38085 * 3 2 1 28 28 H 1.09001 * 109.47132 * 135.38767 * 3 2 1 29 29 H 1.08993 * 109.47226 * 36.69540 * 5 4 3 30 30 H 1.09004 * 109.46929 * 156.69958 * 5 4 3 31 31 H 0.96697 * 117.00172 * 180.02562 * 8 6 5 32 32 H 1.08005 * 125.98849 * 359.97198 * 12 11 9 33 33 H 1.09000 * 109.46688 * 149.69399 * 15 14 13 34 34 H 1.09000 * 109.46898 * 29.69413 * 15 14 13 35 35 H 0.97003 * 120.00025 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.47375 * 89.99228 * 25 24 14 37 37 H 1.08999 * 109.47071 * 209.99792 * 25 24 14 38 38 H 1.09002 * 109.47243 * 329.99646 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3308 -0.3664 5 6 3.3796 -2.3331 0.6737 6 6 4.7458 -2.1141 1.2710 7 8 5.4437 -1.2134 0.8688 8 8 5.1877 -2.9201 2.2491 9 6 3.3597 -1.6336 -1.6603 10 8 3.2720 -0.7693 -2.5111 11 6 3.7121 -3.0128 -2.0441 12 6 4.3686 -3.9669 -1.2348 13 7 4.4940 -5.0654 -1.9269 14 7 3.9406 -4.8666 -3.1967 15 6 3.8867 -5.8602 -4.2721 16 6 5.1245 -5.7460 -5.1240 17 1 5.8760 -5.0070 -4.8882 18 6 5.3001 -6.5883 -6.2013 19 7 4.3847 -7.4878 -6.4887 20 14 6.8381 -6.4519 -7.2527 21 1 8.0368 -6.6927 -6.4099 22 1 6.7862 -7.4629 -8.3392 23 1 6.9141 -5.0920 -7.8445 24 6 3.4622 -3.6138 -3.2614 25 6 2.7784 -2.9802 -4.4454 26 1 -1.0499 -0.0004 -0.0003 27 1 3.0092 0.2602 0.9945 28 1 3.0089 0.7324 -0.7217 29 1 2.6233 -2.2401 1.4530 30 1 3.3299 -3.3303 0.2362 31 1 6.0702 -2.7401 2.6011 32 1 4.7038 -3.8147 -0.2194 33 1 3.0046 -5.6822 -4.8872 34 1 3.8333 -6.8598 -3.8408 35 1 4.5084 -8.0807 -7.2464 36 1 1.7046 -3.1565 -4.3821 37 1 2.9711 -1.9073 -4.4449 38 1 3.1649 -3.4183 -5.3656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588418732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:43 Heat of formation + Delta-G solvation = 22.082741 kcal Electronic energy + Delta-G solvation = -24811.401101 eV Core-core repulsion = 21044.291662 eV Total energy + Delta-G solvation = -3767.109438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28474 -40.33937 -39.05391 -36.44322 -35.71599 -34.07154 -33.22410 -32.13207 -31.24662 -29.34088 -28.00901 -26.93289 -26.08775 -23.53969 -22.52037 -21.49337 -20.28646 -18.71922 -18.40536 -18.24933 -17.12774 -16.79501 -16.65261 -16.38383 -15.95045 -15.32644 -14.91072 -14.59810 -14.46526 -13.92400 -13.51231 -13.41269 -13.29319 -13.17771 -12.57294 -12.51391 -12.33355 -12.09783 -11.78493 -11.62988 -11.54287 -11.12788 -10.94030 -10.89805 -10.77354 -10.38501 -10.29899 -10.28917 -9.99126 -9.54297 -9.10106 -8.72868 -8.66377 -8.02989 -6.35962 -4.44142 1.93974 2.02594 2.19329 2.60434 2.71518 2.83924 3.18046 3.19953 3.23676 3.29381 3.38085 3.65898 4.23079 4.28191 4.64525 4.73041 4.96188 5.00054 5.06728 5.09380 5.21875 5.36629 5.57036 5.65776 5.76045 5.81013 5.98515 6.23908 6.28121 6.43781 6.47607 6.68903 6.84114 7.03266 7.26711 7.47373 7.52053 7.67493 7.71343 7.74104 8.24404 8.34942 8.61374 9.23244 10.72141 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.003896 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.781916 B = 7185.942180 C = 7944.979015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.203 4.203 3 C 0.228 3.772 4 N -0.598 5.598 5 C 0.099 3.901 6 C 0.452 3.548 7 O -0.497 6.497 8 O -0.516 6.516 9 C 0.615 3.385 10 O -0.532 6.532 11 C -0.332 4.332 12 C 0.039 3.961 13 N -0.286 5.286 14 N -0.309 5.309 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.065 0.935 18 C 0.069 3.931 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.168 3.832 25 C -0.104 4.104 26 H 0.217 0.783 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.412 0.588 32 H 0.175 0.825 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.270 0.730 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 10.176 15.502 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.106 3.894 4 N -0.331 5.331 5 C -0.027 4.027 6 C 0.291 3.709 7 O -0.384 6.384 8 O -0.328 6.328 9 C 0.407 3.593 10 O -0.408 6.408 11 C -0.348 4.348 12 C -0.147 4.147 13 N -0.106 5.106 14 N -0.086 5.086 15 C 0.134 3.866 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.031 3.969 25 C -0.162 4.162 26 H 0.234 0.766 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.271 0.729 32 H 0.192 0.808 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.635 9.289 14.495 18.115 hybrid contribution 1.068 0.809 -0.113 1.344 sum -4.567 10.098 14.382 18.157 Atomic orbital electron populations 1.24931 0.95888 0.98667 1.01128 1.23603 0.94924 1.01549 1.00331 1.18198 0.83246 0.85300 1.02656 1.47309 1.66864 1.13135 1.05769 1.21589 0.90871 0.97226 0.92992 1.24273 0.90202 0.79284 0.77103 1.90770 1.57202 1.31424 1.58960 1.84528 1.39965 1.57382 1.50876 1.17393 0.74167 0.87036 0.80677 1.90708 1.52085 1.49111 1.48932 1.19575 1.21875 0.96391 0.96953 1.23939 1.00240 0.91189 0.99302 1.77167 1.18910 1.22932 0.91591 1.49427 1.38158 1.10254 1.10783 1.19897 0.99341 0.86180 0.81199 1.21220 1.04886 1.20011 1.12033 0.91630 1.24911 0.97240 0.94362 0.96997 1.69900 1.34093 1.19891 1.28762 0.86374 0.82464 0.78181 0.79500 1.19879 1.20844 1.19781 1.21406 0.94278 0.86002 0.95239 1.20667 0.99242 1.02193 0.94069 0.76603 0.88445 0.86865 0.86248 0.83428 0.72866 0.80821 0.92435 0.92342 0.92015 0.90530 0.88426 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 19.25 29.55 0.57 -1.33 16 2 C -0.20 -2.34 13.68 -37.13 -0.51 -2.85 16 3 C 0.23 2.63 5.87 -6.83 -0.04 2.59 16 4 N -0.60 -7.99 1.94 -179.67 -0.35 -8.34 16 5 C 0.10 1.02 5.53 -5.19 -0.03 0.99 16 6 C 0.45 4.89 6.78 36.01 0.24 5.14 16 7 O -0.50 -7.13 17.12 -18.75 -0.32 -7.46 16 8 O -0.52 -4.09 13.42 -39.24 -0.53 -4.62 16 9 C 0.62 10.64 7.55 -12.52 -0.09 10.55 16 10 O -0.53 -10.45 14.74 5.28 0.08 -10.37 16 11 C -0.33 -6.16 5.72 -105.07 -0.60 -6.77 16 12 C 0.04 0.69 9.62 -16.98 -0.16 0.53 16 13 N -0.29 -6.07 12.50 30.86 0.39 -5.69 16 14 N -0.31 -6.88 3.56 -57.77 -0.21 -7.08 16 15 C 0.25 6.12 5.78 -5.19 -0.03 6.09 16 16 C -0.54 -14.53 9.39 -34.44 -0.32 -14.85 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 20 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.17 3.38 7.00 -81.60 -0.57 2.81 16 25 C -0.10 -1.83 9.63 36.00 0.35 -1.49 16 26 H 0.22 1.41 7.80 -54.10 -0.42 0.99 16 27 H 0.10 0.88 8.07 -51.92 -0.42 0.46 16 28 H 0.11 1.43 7.34 -51.93 -0.38 1.05 16 29 H 0.12 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.15 1.62 4.07 -51.93 -0.21 1.41 16 31 H 0.41 1.73 9.10 45.56 0.41 2.14 16 32 H 0.18 2.47 4.48 -52.48 -0.23 2.24 16 33 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.73 6.42 -51.93 -0.33 1.39 16 38 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -33.85 341.81 -4.56 -38.41 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.19 Total: 4.63 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.30 Total: 3.16 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.57 Total: -44.67 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.77 Total: -22.45 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.85 -4.56 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588418732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.496 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds