Wall clock time and date at job start Tue Mar 31 2020 08:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47726 * 15.38278 * 3 2 1 5 5 C 1.46503 * 119.99964 * 270.00376 * 4 3 2 6 6 C 1.50703 * 109.46803 * 276.69812 * 5 4 3 7 7 O 1.20831 * 120.00084 * 359.97438 * 6 5 4 8 8 O 1.34225 * 119.99973 * 180.02562 * 6 5 4 9 9 C 1.34775 * 119.99785 * 89.99733 * 4 3 2 10 10 O 1.21598 * 120.00301 * 6.55726 * 9 4 3 11 11 C 1.47433 * 119.99653 * 186.55543 * 9 4 3 12 12 C 1.41286 * 126.41578 * 332.38169 * 11 9 4 13 13 N 1.30449 * 108.02313 * 179.72065 * 12 11 9 14 14 N 1.39933 * 108.89448 * 0.41358 * 13 12 11 15 15 C 1.46507 * 125.75099 * 179.84371 * 14 13 12 16 16 C 1.50696 * 109.47144 * 269.69316 * 15 14 13 17 17 H 1.08000 * 120.00038 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00157 * 179.72777 * 16 15 14 19 19 N 1.31511 * 119.99529 * 0.27514 * 18 16 15 20 20 Si 1.86800 * 120.00136 * 180.27339 * 18 16 15 21 21 H 1.48498 * 109.47003 * 59.99993 * 20 18 16 22 22 H 1.48499 * 109.46776 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46914 * 299.99831 * 20 18 16 24 24 C 1.34258 * 108.49311 * 359.58466 * 14 13 12 25 25 C 1.50698 * 126.29218 * 180.22468 * 24 14 13 26 26 H 4.40647 * 5.51459 * 180.02562 * 4 1 2 27 27 H 1.09009 * 109.47055 * 255.38085 * 3 2 1 28 28 H 1.09001 * 109.47132 * 135.38767 * 3 2 1 29 29 H 1.08993 * 109.47226 * 36.69540 * 5 4 3 30 30 H 1.09004 * 109.46929 * 156.69958 * 5 4 3 31 31 H 0.96697 * 117.00172 * 180.02562 * 8 6 5 32 32 H 1.08005 * 125.98849 * 359.97198 * 12 11 9 33 33 H 1.09000 * 109.46688 * 149.69399 * 15 14 13 34 34 H 1.09000 * 109.46898 * 29.69413 * 15 14 13 35 35 H 0.97003 * 120.00025 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.47375 * 89.99228 * 25 24 14 37 37 H 1.08999 * 109.47071 * 209.99792 * 25 24 14 38 38 H 1.09002 * 109.47243 * 329.99646 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3308 -0.3664 5 6 3.3796 -2.3331 0.6737 6 6 4.7458 -2.1141 1.2710 7 8 5.4437 -1.2134 0.8688 8 8 5.1877 -2.9201 2.2491 9 6 3.3597 -1.6336 -1.6603 10 8 3.2720 -0.7693 -2.5111 11 6 3.7121 -3.0128 -2.0441 12 6 4.3686 -3.9669 -1.2348 13 7 4.4940 -5.0654 -1.9269 14 7 3.9406 -4.8666 -3.1967 15 6 3.8867 -5.8602 -4.2721 16 6 5.1245 -5.7460 -5.1240 17 1 5.8760 -5.0070 -4.8882 18 6 5.3001 -6.5883 -6.2013 19 7 4.3847 -7.4878 -6.4887 20 14 6.8381 -6.4519 -7.2527 21 1 8.0368 -6.6927 -6.4099 22 1 6.7862 -7.4629 -8.3392 23 1 6.9141 -5.0920 -7.8445 24 6 3.4622 -3.6138 -3.2614 25 6 2.7784 -2.9802 -4.4454 26 1 -1.0499 -0.0004 -0.0003 27 1 3.0092 0.2602 0.9945 28 1 3.0089 0.7324 -0.7217 29 1 2.6233 -2.2401 1.4530 30 1 3.3299 -3.3303 0.2362 31 1 6.0702 -2.7401 2.6011 32 1 4.7038 -3.8147 -0.2194 33 1 3.0046 -5.6822 -4.8872 34 1 3.8333 -6.8598 -3.8408 35 1 4.5084 -8.0807 -7.2464 36 1 1.7046 -3.1565 -4.3821 37 1 2.9711 -1.9073 -4.4449 38 1 3.1649 -3.4183 -5.3656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588418732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:42 Heat of formation + Delta-G solvation = -0.745578 kcal Electronic energy + Delta-G solvation = -24812.391011 eV Core-core repulsion = 21044.291662 eV Total energy + Delta-G solvation = -3768.099348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.67236 -41.39600 -40.25842 -37.36967 -36.75397 -35.87552 -34.35292 -33.70571 -32.79126 -30.37468 -29.40783 -28.57670 -27.31731 -25.39313 -23.58821 -22.73769 -21.68274 -20.06864 -19.31391 -19.07492 -18.87422 -18.36743 -17.58301 -17.42369 -17.14372 -16.82346 -16.25238 -16.19123 -15.77048 -15.20856 -14.91110 -14.67502 -14.33280 -14.20672 -14.14410 -13.88694 -13.75230 -13.65179 -13.28629 -13.03838 -12.87074 -12.71170 -12.49808 -12.31669 -11.91728 -11.88684 -11.86175 -11.60993 -11.11118 -10.90625 -10.76609 -10.34400 -10.17471 -9.58065 -8.39010 -6.55027 0.57235 1.01286 1.20012 1.25604 1.37753 1.38284 1.46720 1.63631 1.89143 1.92756 2.29213 2.31946 2.50129 2.93527 3.43824 3.51903 3.61306 3.79747 3.92643 4.09713 4.20291 4.29218 4.32290 4.43795 4.60562 4.62400 4.77151 4.86782 4.99905 5.08076 5.09396 5.26583 5.46205 5.50029 5.59687 5.73533 5.97670 6.08428 6.52713 6.68404 6.69975 6.94861 7.05424 7.16150 8.68637 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.003896 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.781916 B = 7185.942180 C = 7944.979015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.242 4.242 3 C 0.228 3.772 4 N -0.590 5.590 5 C 0.094 3.906 6 C 0.461 3.539 7 O -0.536 6.536 8 O -0.504 6.504 9 C 0.613 3.387 10 O -0.563 6.563 11 C -0.333 4.333 12 C 0.061 3.939 13 N -0.321 5.321 14 N -0.331 5.331 15 C 0.267 3.733 16 C -0.560 4.560 17 H 0.049 0.951 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.152 3.848 25 C -0.096 4.096 26 H 0.248 0.752 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.431 0.569 32 H 0.210 0.790 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.275 0.725 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 10.830 17.076 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.243 4.243 3 C 0.107 3.893 4 N -0.322 5.322 5 C -0.030 4.030 6 C 0.302 3.698 7 O -0.426 6.426 8 O -0.318 6.318 9 C 0.405 3.595 10 O -0.442 6.442 11 C -0.348 4.348 12 C -0.125 4.125 13 N -0.141 5.141 14 N -0.108 5.108 15 C 0.149 3.851 16 C -0.598 4.598 17 H 0.067 0.933 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.193 1.193 24 C 0.017 3.983 25 C -0.154 4.154 26 H 0.264 0.736 27 H 0.142 0.858 28 H 0.114 0.886 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.293 0.707 32 H 0.226 0.774 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.039 9.936 16.135 19.888 hybrid contribution 1.131 0.653 -0.423 1.373 sum -4.908 10.588 15.712 19.572 Atomic orbital electron populations 1.25750 0.96728 0.96728 0.99442 1.23727 0.95326 1.03302 1.01946 1.18277 0.83756 0.83753 1.03468 1.47258 1.65539 1.14399 1.04998 1.21801 0.92128 0.95895 0.93222 1.24188 0.89821 0.78732 0.77030 1.90778 1.58197 1.33187 1.60400 1.84485 1.41383 1.56183 1.49708 1.17270 0.74237 0.86081 0.81956 1.90689 1.53624 1.49591 1.50319 1.19825 1.21277 0.97195 0.96506 1.24467 0.98209 0.89751 1.00078 1.77119 1.20468 1.24834 0.91688 1.49167 1.40061 1.10650 1.10946 1.19441 0.98400 0.85843 0.81451 1.21362 1.05466 1.19983 1.13000 0.93272 1.25652 0.99924 0.93863 0.97889 1.69970 1.35497 1.20320 1.29295 0.85462 0.78824 0.78505 0.78086 1.19999 1.19560 1.19346 1.21895 0.94313 0.85520 0.96613 1.20656 1.00389 1.01704 0.92687 0.73591 0.85777 0.88614 0.82135 0.83973 0.70668 0.77435 0.92646 0.94525 0.91574 0.88276 0.88433 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 19.25 74.32 1.43 -1.51 16 2 C -0.24 -5.11 13.68 31.12 0.43 -4.69 16 3 C 0.23 4.94 5.87 84.57 0.50 5.44 16 4 N -0.59 -14.83 1.94 -840.62 -1.63 -16.46 16 5 C 0.09 1.68 5.53 85.63 0.47 2.16 16 6 C 0.46 8.77 6.78 71.24 0.48 9.25 16 7 O -0.54 -14.46 17.12 21.95 0.38 -14.08 16 8 O -0.50 -6.36 13.42 -51.37 -0.69 -7.04 16 9 C 0.61 20.85 7.55 86.67 0.65 21.50 16 10 O -0.56 -22.20 14.74 -4.02 -0.06 -22.26 16 11 C -0.33 -12.21 5.72 -20.15 -0.12 -12.33 16 12 C 0.06 2.11 9.62 85.65 0.82 2.93 16 13 N -0.32 -13.73 12.50 -56.27 -0.70 -14.43 16 14 N -0.33 -15.05 3.56 -336.70 -1.20 -16.25 16 15 C 0.27 13.48 5.78 85.63 0.50 13.98 16 16 C -0.56 -30.70 9.39 25.60 0.24 -30.46 16 17 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 18 C 0.03 1.54 5.46 84.66 0.46 2.00 16 19 N -0.91 -50.33 13.29 21.45 0.28 -50.04 16 20 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.15 6.22 7.00 42.14 0.29 6.51 16 25 C -0.10 -3.46 9.63 71.24 0.69 -2.77 16 26 H 0.25 2.32 7.80 -4.42 -0.03 2.29 16 27 H 0.12 1.95 8.07 -2.38 -0.02 1.93 16 28 H 0.10 2.41 7.34 -2.39 -0.02 2.39 16 29 H 0.16 1.60 8.12 -2.39 -0.02 1.58 16 30 H 0.14 2.76 4.07 -2.39 -0.01 2.75 16 31 H 0.43 2.26 9.10 -74.06 -0.67 1.59 16 32 H 0.21 5.47 4.48 -2.91 -0.01 5.46 16 33 H 0.06 2.77 7.62 -2.39 -0.02 2.75 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.10 3.50 6.42 -2.39 -0.02 3.49 16 38 H 0.07 2.88 7.70 -2.39 -0.02 2.86 16 Total: -1.00 -74.22 341.81 5.70 -68.52 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.45 Total: 15.36 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.85 Total: 12.01 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -3.25 Total: -97.19 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.37 Total: -43.38 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.22 5.70 -68.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588418732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.771 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds