Wall clock time and date at job start Tue Mar 31 2020 08:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99841 * 2 1 4 4 N 1.46503 * 109.47155 * 125.00107 * 3 2 1 5 5 C 1.46500 * 119.99751 * 269.99759 * 4 3 2 6 6 C 1.50694 * 109.47450 * 269.99867 * 5 4 3 7 7 H 1.08008 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00712 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00636 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99483 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46996 * 90.00310 * 10 8 6 12 12 H 1.48501 * 109.46931 * 210.00003 * 10 8 6 13 13 H 1.48493 * 109.47522 * 330.00279 * 10 8 6 14 14 C 1.34777 * 120.00197 * 89.99399 * 4 3 2 15 15 O 1.21576 * 120.00059 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00020 * 0.02562 * 14 4 3 17 17 C 1.39414 * 119.99908 * 185.07943 * 16 14 4 18 18 C 1.39022 * 119.62964 * 174.86648 * 17 16 14 19 19 C 1.39595 * 118.92657 * 179.69981 * 18 17 16 20 20 C 1.48066 * 120.89055 * 180.25360 * 19 18 17 21 21 O 1.21431 * 119.99975 * 0.02562 * 20 19 18 22 22 O 1.34668 * 119.99946 * 180.02562 * 20 19 18 23 23 C 1.40021 * 118.21662 * 0.27869 * 19 18 17 24 24 C 1.37980 * 119.15518 * 359.97438 * 23 19 18 25 25 N 1.31894 * 120.99768 * 0.02562 * 24 23 19 26 26 H 1.07999 * 120.00187 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00067 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47107 * 5.00096 * 3 2 1 30 30 H 1.08996 * 109.46836 * 244.99784 * 3 2 1 31 31 H 1.09001 * 109.47409 * 30.00275 * 5 4 3 32 32 H 1.09006 * 109.47242 * 150.00114 * 5 4 3 33 33 H 0.96997 * 120.00274 * 180.02562 * 9 8 6 34 34 H 0.97001 * 120.00379 * 5.08130 * 16 14 4 35 35 H 1.08003 * 120.53912 * 359.97438 * 18 17 16 36 36 H 0.96703 * 116.99959 * 179.97438 * 22 20 19 37 37 H 1.08006 * 120.41959 * 179.97438 * 23 19 18 38 38 H 1.08002 * 119.50322 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3033 3.8372 1.6365 8 6 2.5193 4.0667 3.6085 9 7 2.7679 5.3572 3.6568 10 14 1.7247 3.2133 5.0679 11 1 2.7807 2.7222 5.9893 12 1 0.8487 4.1737 5.7860 13 1 0.9131 2.0659 4.5887 14 6 4.2497 0.8662 0.9824 15 8 5.0218 0.8889 1.9213 16 7 4.6500 0.3762 -0.2075 17 6 5.9121 -0.2022 -0.3343 18 6 6.2764 -0.8008 -1.5350 19 6 7.5461 -1.3699 -1.6478 20 6 7.9813 -2.0137 -2.9082 21 8 7.2302 -2.0512 -3.8616 22 8 9.2100 -2.5576 -2.9971 23 6 8.3968 -1.3161 -0.5370 24 6 7.9545 -0.7074 0.6196 25 7 6.7478 -0.1797 0.6907 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4887 1.6967 2.5460 32 1 3.0989 1.3605 3.2260 33 1 2.5397 5.8657 4.4506 34 1 4.0599 0.4260 -0.9758 35 1 5.5899 -0.8213 -2.3685 36 1 9.4490 -2.9669 -3.8400 37 1 9.3866 -1.7455 -0.5849 38 1 8.6058 -0.6631 1.4799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588463246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:09 Heat of formation + Delta-G solvation = -26.555245 kcal Electronic energy + Delta-G solvation = -24218.694973 eV Core-core repulsion = 20449.476433 eV Total energy + Delta-G solvation = -3769.218539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09325 -40.21351 -39.04077 -36.49016 -35.93606 -34.77538 -33.15234 -32.80258 -32.13999 -30.21566 -28.06980 -25.89314 -25.58162 -23.63333 -22.76021 -21.56376 -20.15719 -19.39858 -18.91562 -18.04995 -17.42502 -16.90535 -16.66057 -16.03458 -15.86373 -15.43801 -15.22770 -15.08063 -14.54653 -14.25943 -14.11131 -13.73114 -13.61109 -13.16246 -13.04692 -12.35034 -12.22375 -11.99327 -11.89421 -11.64686 -11.33019 -11.16944 -10.97604 -10.69968 -10.51392 -10.13835 -10.06897 -9.92204 -9.55223 -9.33431 -8.91459 -8.57506 -8.32871 -7.74549 -6.07418 -4.06245 0.39793 1.00971 2.25437 2.31919 2.46615 2.92902 3.31039 3.36884 3.39200 3.54529 4.02441 4.11360 4.40880 4.46585 4.60269 4.75445 4.78336 5.01154 5.09650 5.24881 5.26408 5.40312 5.46925 5.57237 5.79324 5.86814 6.03234 6.04681 6.15033 6.41790 6.65564 6.73904 6.78095 6.85096 7.15041 7.35190 7.47488 7.61472 7.95217 8.42214 8.48568 8.95570 9.14726 9.52762 11.05977 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.003545 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.181403 B = 7896.467226 C = 8874.506577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.233 3.767 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.691 3.309 15 O -0.518 6.518 16 N -0.673 5.673 17 C 0.391 3.609 18 C -0.158 4.158 19 C -0.055 4.055 20 C 0.533 3.467 21 O -0.507 6.507 22 O -0.507 6.507 23 C -0.166 4.166 24 C 0.133 3.867 25 N -0.446 5.446 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.411 0.589 35 H 0.148 0.852 36 H 0.416 0.584 37 H 0.148 0.852 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -16.260 -13.412 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.334 5.334 5 C 0.113 3.887 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.392 3.608 15 O -0.388 6.388 16 N -0.323 5.323 17 C 0.157 3.843 18 C -0.183 4.183 19 C -0.064 4.064 20 C 0.376 3.624 21 O -0.395 6.395 22 O -0.319 6.319 23 C -0.188 4.188 24 C -0.025 4.025 25 N -0.161 5.161 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.249 0.751 35 H 0.166 0.834 36 H 0.275 0.725 37 H 0.166 0.834 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.327 -15.422 -11.605 20.311 hybrid contribution -0.345 -0.900 -1.018 1.402 sum 5.982 -16.322 -12.623 21.484 Atomic orbital electron populations 1.23857 0.95800 1.01939 0.99951 1.23466 0.96555 0.98937 1.00432 1.20573 0.93304 0.95813 0.89127 1.47273 1.08903 1.63592 1.13660 1.19603 0.94759 0.94961 0.79388 1.21345 1.41158 0.91174 1.03126 0.90745 1.24831 0.95286 0.94708 0.98088 1.69894 1.47810 1.06620 1.29249 0.86868 0.79872 0.79640 0.83416 1.19840 1.21116 1.19027 1.15950 0.83218 0.79278 0.82374 1.91024 1.51625 1.58128 1.37996 1.43154 1.14513 1.61147 1.13463 1.18074 0.86259 0.90919 0.89007 1.21443 0.96914 1.01473 0.98426 1.18955 0.94791 1.00577 0.92078 1.20770 0.79071 0.75049 0.87487 1.90899 1.54222 1.55505 1.38877 1.84545 1.33590 1.69525 1.44237 1.22312 1.01201 1.01996 0.93244 1.22827 0.91364 0.91336 0.97023 1.67713 1.03153 1.16482 1.28737 0.88662 0.88089 0.87721 0.88643 0.91328 0.94973 0.94367 0.92567 0.75120 0.83423 0.72465 0.83446 0.81542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 14.32 29.01 0.42 -1.65 16 2 C -0.17 -2.25 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 2.05 5.66 -5.19 -0.03 2.02 16 4 N -0.60 -12.14 2.44 -182.19 -0.44 -12.59 16 5 C 0.23 5.66 4.23 -5.20 -0.02 5.64 16 6 C -0.53 -15.11 9.94 -34.45 -0.34 -15.45 16 7 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 10 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 14 C 0.69 14.38 8.24 -86.92 -0.72 13.66 16 15 O -0.52 -13.07 14.18 5.30 0.08 -13.00 16 16 N -0.67 -10.63 5.27 -15.83 -0.08 -10.72 16 17 C 0.39 6.00 7.42 -154.77 -1.15 4.85 16 18 C -0.16 -1.92 9.51 -38.79 -0.37 -2.29 16 19 C -0.05 -0.61 5.90 -104.69 -0.62 -1.22 16 20 C 0.53 5.36 8.30 34.76 0.29 5.65 16 21 O -0.51 -6.34 17.23 -19.21 -0.33 -6.67 16 22 O -0.51 -3.37 12.78 -40.41 -0.52 -3.89 16 23 C -0.17 -1.67 9.70 -39.01 -0.38 -2.05 16 24 C 0.13 1.67 11.16 -17.62 -0.20 1.47 16 25 N -0.45 -7.62 7.85 -12.42 -0.10 -7.72 16 26 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 28 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.10 1.50 7.72 -51.93 -0.40 1.10 16 30 H 0.07 0.84 6.29 -51.93 -0.33 0.51 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.41 4.97 6.39 -40.82 -0.26 4.71 16 35 H 0.15 1.54 7.74 -52.48 -0.41 1.13 16 36 H 0.42 0.84 9.11 45.56 0.42 1.26 16 37 H 0.15 1.08 7.71 -52.48 -0.40 0.67 16 38 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -38.00 338.94 -7.13 -45.13 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.38 Total: 4.30 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -3.57 Total: 10.05 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.15 Total: -57.90 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.77 Total: -23.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.00 -7.13 -45.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588463246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.574 kcal (2) G-P(sol) polarization free energy of solvation -37.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds