Wall clock time and date at job start Tue Mar 31 2020 08:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99841 * 2 1 4 4 N 1.46503 * 109.47155 * 125.00107 * 3 2 1 5 5 C 1.46500 * 119.99751 * 269.99759 * 4 3 2 6 6 C 1.50694 * 109.47450 * 269.99867 * 5 4 3 7 7 H 1.08008 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00712 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00636 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99483 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46996 * 90.00310 * 10 8 6 12 12 H 1.48501 * 109.46931 * 210.00003 * 10 8 6 13 13 H 1.48493 * 109.47522 * 330.00279 * 10 8 6 14 14 C 1.34777 * 120.00197 * 89.99399 * 4 3 2 15 15 O 1.21576 * 120.00059 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00020 * 0.02562 * 14 4 3 17 17 C 1.39414 * 119.99908 * 185.07943 * 16 14 4 18 18 C 1.39022 * 119.62964 * 174.86648 * 17 16 14 19 19 C 1.39595 * 118.92657 * 179.69981 * 18 17 16 20 20 C 1.48066 * 120.89055 * 180.25360 * 19 18 17 21 21 O 1.21431 * 119.99975 * 0.02562 * 20 19 18 22 22 O 1.34668 * 119.99946 * 180.02562 * 20 19 18 23 23 C 1.40021 * 118.21662 * 0.27869 * 19 18 17 24 24 C 1.37980 * 119.15518 * 359.97438 * 23 19 18 25 25 N 1.31894 * 120.99768 * 0.02562 * 24 23 19 26 26 H 1.07999 * 120.00187 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00067 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47107 * 5.00096 * 3 2 1 30 30 H 1.08996 * 109.46836 * 244.99784 * 3 2 1 31 31 H 1.09001 * 109.47409 * 30.00275 * 5 4 3 32 32 H 1.09006 * 109.47242 * 150.00114 * 5 4 3 33 33 H 0.96997 * 120.00274 * 180.02562 * 9 8 6 34 34 H 0.97001 * 120.00379 * 5.08130 * 16 14 4 35 35 H 1.08003 * 120.53912 * 359.97438 * 18 17 16 36 36 H 0.96703 * 116.99959 * 179.97438 * 22 20 19 37 37 H 1.08006 * 120.41959 * 179.97438 * 23 19 18 38 38 H 1.08002 * 119.50322 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3033 3.8372 1.6365 8 6 2.5193 4.0667 3.6085 9 7 2.7679 5.3572 3.6568 10 14 1.7247 3.2133 5.0679 11 1 2.7807 2.7222 5.9893 12 1 0.8487 4.1737 5.7860 13 1 0.9131 2.0659 4.5887 14 6 4.2497 0.8662 0.9824 15 8 5.0218 0.8889 1.9213 16 7 4.6500 0.3762 -0.2075 17 6 5.9121 -0.2022 -0.3343 18 6 6.2764 -0.8008 -1.5350 19 6 7.5461 -1.3699 -1.6478 20 6 7.9813 -2.0137 -2.9082 21 8 7.2302 -2.0512 -3.8616 22 8 9.2100 -2.5576 -2.9971 23 6 8.3968 -1.3161 -0.5370 24 6 7.9545 -0.7074 0.6196 25 7 6.7478 -0.1797 0.6907 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4887 1.6967 2.5460 32 1 3.0989 1.3605 3.2260 33 1 2.5397 5.8657 4.4506 34 1 4.0599 0.4260 -0.9758 35 1 5.5899 -0.8213 -2.3685 36 1 9.4490 -2.9669 -3.8400 37 1 9.3866 -1.7455 -0.5849 38 1 8.6058 -0.6631 1.4799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588463246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:09 Heat of formation + Delta-G solvation = -54.052537 kcal Electronic energy + Delta-G solvation = -24219.887345 eV Core-core repulsion = 20449.476433 eV Total energy + Delta-G solvation = -3770.410911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14759 -41.25590 -40.22076 -37.34749 -37.17429 -36.15301 -34.93519 -33.87575 -33.68351 -31.45925 -29.81274 -27.05069 -26.68192 -25.06881 -24.03463 -22.78594 -21.29815 -20.65715 -19.92067 -19.10309 -18.89661 -18.69373 -17.73861 -16.86184 -16.81731 -16.77303 -16.60769 -16.22285 -15.93054 -15.72197 -15.24011 -15.09615 -14.77026 -14.40272 -14.34120 -14.19453 -13.53660 -13.22172 -13.06861 -12.91033 -12.66372 -12.51682 -12.29687 -12.00108 -11.97002 -11.87974 -11.72027 -11.33849 -11.08385 -10.81059 -10.36715 -10.18719 -9.63144 -9.21891 -8.31846 -6.36687 -0.49532 0.02460 1.17603 1.35044 1.39066 1.47078 1.47878 1.55488 1.94143 2.19496 2.32916 2.81840 2.86037 3.02999 3.50198 3.72663 3.80844 3.90398 4.00595 4.15336 4.23041 4.33498 4.58909 4.64810 4.74932 4.82517 4.88619 4.94318 5.05307 5.16995 5.44825 5.46921 5.48043 5.63630 5.69674 5.79582 5.88984 6.27387 6.64378 6.72212 6.89027 7.14441 7.25586 7.63297 8.85240 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.003545 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.181403 B = 7896.467226 C = 8874.506577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.187 4.187 3 C 0.131 3.869 4 N -0.606 5.606 5 C 0.246 3.754 6 C -0.535 4.535 7 H 0.028 0.972 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.237 1.237 14 C 0.689 3.311 15 O -0.574 6.574 16 N -0.660 5.660 17 C 0.360 3.640 18 C -0.145 4.145 19 C -0.063 4.063 20 C 0.545 3.455 21 O -0.534 6.534 22 O -0.494 6.494 23 C -0.134 4.134 24 C 0.118 3.882 25 N -0.500 5.500 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.426 0.574 35 H 0.165 0.835 36 H 0.439 0.561 37 H 0.184 0.816 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -18.995 -14.528 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.206 4.206 3 C 0.009 3.991 4 N -0.341 5.341 5 C 0.124 3.876 6 C -0.573 4.573 7 H 0.046 0.954 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.160 1.160 14 C 0.390 3.610 15 O -0.448 6.448 16 N -0.312 5.312 17 C 0.128 3.872 18 C -0.169 4.169 19 C -0.073 4.073 20 C 0.389 3.611 21 O -0.425 6.425 22 O -0.308 6.308 23 C -0.156 4.156 24 C -0.040 4.040 25 N -0.215 5.215 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.267 0.733 35 H 0.182 0.818 36 H 0.302 0.698 37 H 0.201 0.799 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.276 -18.209 -12.826 23.140 hybrid contribution -0.142 -0.077 -0.818 0.834 sum 6.133 -18.285 -13.644 23.625 Atomic orbital electron populations 1.24090 0.95340 1.03129 0.97359 1.23269 0.96890 0.97764 1.02700 1.20817 0.92835 0.97070 0.88359 1.47216 1.09835 1.63266 1.13771 1.19204 0.95346 0.91835 0.81234 1.21567 1.40439 0.93508 1.01808 0.95387 1.25814 0.95963 0.95331 1.01456 1.70048 1.49523 1.08528 1.30497 0.85736 0.79050 0.79379 0.78902 1.20269 1.20009 1.16016 1.16142 0.82801 0.78952 0.83116 1.90968 1.53123 1.60453 1.40249 1.42757 1.15345 1.60854 1.12233 1.18239 0.86039 0.92819 0.90088 1.21511 0.97754 1.00207 0.97417 1.19194 0.94530 1.00400 0.93133 1.20424 0.79660 0.74618 0.86390 1.90902 1.55278 1.56704 1.39577 1.84484 1.31457 1.68867 1.45994 1.22624 1.02066 0.99308 0.91573 1.23226 0.90419 0.91521 0.98804 1.67554 1.05145 1.18214 1.30595 0.86418 0.87914 0.87019 0.89589 0.88791 0.93009 0.96288 0.92294 0.73257 0.81785 0.69781 0.79857 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 14.32 67.78 0.97 -2.37 16 2 C -0.19 -4.50 9.85 25.65 0.25 -4.25 16 3 C 0.13 3.91 5.66 85.63 0.48 4.40 16 4 N -0.61 -25.07 2.44 -848.58 -2.07 -27.14 16 5 C 0.25 12.13 4.23 85.63 0.36 12.50 16 6 C -0.53 -31.74 9.94 25.60 0.25 -31.48 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.01 0.73 5.47 84.65 0.46 1.20 16 9 N -0.95 -60.32 13.96 21.44 0.30 -60.02 16 10 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 14 C 0.69 29.66 8.24 179.06 1.47 31.13 16 15 O -0.57 -30.40 14.18 -3.96 -0.06 -30.46 16 16 N -0.66 -21.18 5.27 -322.27 -1.70 -22.88 16 17 C 0.36 11.12 7.42 132.93 0.99 12.10 16 18 C -0.14 -3.34 9.51 22.79 0.22 -3.13 16 19 C -0.06 -1.25 5.90 -19.91 -0.12 -1.37 16 20 C 0.55 9.33 8.30 70.43 0.58 9.91 16 21 O -0.53 -12.08 17.23 20.06 0.35 -11.74 16 22 O -0.49 -4.61 12.78 -55.77 -0.71 -5.32 16 23 C -0.13 -2.37 9.70 22.64 0.22 -2.15 16 24 C 0.12 2.87 11.16 84.62 0.94 3.81 16 25 N -0.50 -17.44 7.85 -193.20 -1.52 -18.95 16 26 H 0.12 1.94 8.06 -2.91 -0.02 1.91 16 27 H 0.10 2.09 7.84 -2.91 -0.02 2.07 16 28 H 0.11 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.09 2.71 7.72 -2.39 -0.02 2.69 16 30 H 0.09 2.24 6.29 -2.39 -0.02 2.22 16 31 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 32 H 0.02 1.01 6.85 -2.38 -0.02 1.00 16 33 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.43 10.17 6.39 -92.71 -0.59 9.58 16 35 H 0.16 3.14 7.74 -2.91 -0.02 3.12 16 36 H 0.44 0.01 9.11 -74.06 -0.67 -0.66 16 37 H 0.18 1.88 7.71 -2.91 -0.02 1.86 16 38 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -87.49 338.94 3.37 -84.12 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.20 Total: 15.39 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 7.10 Total: 30.31 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -4.99 Total: -128.99 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.42 Total: -47.52 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -87.49 3.37 -84.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588463246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -87.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds