Wall clock time and date at job start Tue Mar 31 2020 08:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00182 * 2 1 4 4 N 1.46495 * 109.47119 * 124.99335 * 3 2 1 5 5 C 1.46501 * 120.00211 * 270.00314 * 4 3 2 6 6 C 1.50703 * 109.47069 * 269.99958 * 5 4 3 7 7 H 1.08006 * 120.00032 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00295 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99442 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00011 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47720 * 59.99571 * 10 8 6 12 12 H 1.48501 * 109.47229 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46953 * 299.99523 * 10 8 6 14 14 C 1.34782 * 120.00020 * 89.99961 * 4 3 2 15 15 O 1.21581 * 120.00076 * 179.97438 * 14 4 3 16 16 N 1.34776 * 120.00017 * 0.02562 * 14 4 3 17 17 C 1.39550 * 120.00058 * 184.64292 * 16 14 4 18 18 C 1.39355 * 120.82158 * 145.03914 * 17 16 14 19 19 C 1.38301 * 119.27027 * 180.02562 * 18 17 16 20 20 N 1.31605 * 120.99878 * 0.02562 * 19 18 17 21 21 C 1.32841 * 121.80704 * 359.72615 * 20 19 18 22 22 C 1.48080 * 119.69701 * 180.26688 * 21 20 19 23 23 O 1.21425 * 120.00411 * 180.26445 * 22 21 20 24 24 O 1.34680 * 119.99595 * 0.26726 * 22 21 20 25 25 C 1.39123 * 120.60966 * 0.53598 * 21 20 19 26 26 H 1.08000 * 119.99961 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99876 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99961 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46938 * 4.99724 * 3 2 1 30 30 H 1.09000 * 109.46894 * 244.99723 * 3 2 1 31 31 H 1.08996 * 109.47429 * 29.99747 * 5 4 3 32 32 H 1.09005 * 109.47287 * 150.00208 * 5 4 3 33 33 H 0.97005 * 119.99313 * 180.02562 * 9 8 6 34 34 H 0.97010 * 119.99383 * 4.64609 * 16 14 4 35 35 H 1.07990 * 120.36240 * 0.02562 * 18 17 16 36 36 H 1.08004 * 119.49908 * 179.97438 * 19 18 17 37 37 H 0.96698 * 116.99970 * 180.02562 * 24 22 21 38 38 H 1.08004 * 120.51572 * 179.75218 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5192 4.0667 3.6086 9 7 1.9597 3.4659 4.6360 10 14 2.8723 5.8997 3.6771 11 1 2.1357 6.5869 2.5861 12 1 2.4315 6.4401 4.9881 13 1 4.3301 6.1294 3.5113 14 6 4.2497 0.8661 0.9826 15 8 5.0217 0.8888 1.9215 16 7 4.6500 0.3761 -0.2074 17 6 5.9169 -0.1946 -0.3364 18 6 6.1281 -1.2798 -1.1848 19 6 7.3968 -1.8207 -1.2878 20 7 8.4024 -1.3265 -0.5975 21 6 8.2487 -0.2903 0.2194 22 6 9.4140 0.2318 0.9693 23 8 9.2789 1.1756 1.7212 24 8 10.6238 -0.3403 0.8173 25 6 7.0020 0.3054 0.3812 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4886 1.6968 2.5459 32 1 3.0988 1.3604 3.2261 33 1 1.7307 3.9747 5.4296 34 1 4.0575 0.4203 -0.9742 35 1 5.3102 -1.6937 -1.7557 36 1 7.5646 -2.6621 -1.9439 37 1 11.3541 0.0350 1.3280 38 1 6.8779 1.1453 1.0488 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588463564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:17 Heat of formation + Delta-G solvation = -42.665305 kcal Electronic energy + Delta-G solvation = -24416.897848 eV Core-core repulsion = 20646.980724 eV Total energy + Delta-G solvation = -3769.917124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02526 -40.01175 -39.05156 -36.15787 -36.06528 -35.10656 -33.24450 -32.28485 -31.62543 -30.69371 -27.58395 -25.72247 -25.41098 -24.00272 -22.66537 -21.55295 -20.28248 -19.66475 -18.52023 -18.01170 -17.38500 -16.58566 -16.39269 -15.95571 -15.77753 -15.68920 -15.16777 -14.92776 -14.52036 -14.13629 -13.96183 -13.82775 -13.41486 -13.30877 -12.90269 -12.35764 -12.16274 -11.92950 -11.56138 -11.39053 -11.20374 -10.97727 -10.91892 -10.78844 -10.63351 -10.24115 -9.97380 -9.75616 -9.45013 -9.33799 -9.23493 -8.65046 -8.46372 -7.84092 -6.08123 -4.13338 0.45562 1.16461 2.27442 2.39093 2.72915 3.01816 3.30514 3.35696 3.39169 3.54741 3.83901 4.17254 4.27586 4.44482 4.78429 4.79650 4.94849 5.04864 5.24024 5.26518 5.31206 5.35116 5.45625 5.70315 5.86228 6.00423 6.05027 6.28550 6.38239 6.55488 6.66345 6.74333 6.80073 7.22939 7.36946 7.50400 7.59497 7.87944 7.96073 8.16260 8.35009 8.84510 9.01884 9.52024 10.99888 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004541 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.436741 B = 6164.786686 C = 8132.580259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.261 3.739 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.696 3.304 15 O -0.558 6.558 16 N -0.690 5.690 17 C 0.218 3.782 18 C -0.181 4.181 19 C 0.113 3.887 20 N -0.457 5.457 21 C 0.101 3.899 22 C 0.541 3.459 23 O -0.494 6.494 24 O -0.496 6.496 25 C -0.106 4.106 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.411 0.589 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -10.471 -15.089 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.331 5.331 5 C 0.142 3.858 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.397 3.603 15 O -0.433 6.433 16 N -0.341 5.341 17 C 0.112 3.888 18 C -0.204 4.204 19 C -0.048 4.048 20 N -0.170 5.170 21 C -0.034 4.034 22 C 0.382 3.618 23 O -0.380 6.380 24 O -0.306 6.306 25 C -0.129 4.129 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.269 0.731 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.966 -10.573 -14.159 18.651 hybrid contribution -0.686 1.572 0.133 1.720 sum 5.280 -9.002 -14.025 17.482 Atomic orbital electron populations 1.23850 0.95799 1.01941 0.99692 1.23415 0.96541 0.98798 1.00671 1.20571 0.93243 0.95962 0.89057 1.47635 1.08494 1.62494 1.14458 1.19295 0.95391 0.93709 0.77359 1.21382 1.40964 0.93227 1.01406 0.92464 1.24910 0.94919 0.98815 0.95239 1.69919 1.41739 1.36344 1.05171 0.86556 0.78938 0.84756 0.77169 1.20273 1.21135 1.20085 1.15990 0.83569 0.78792 0.81921 1.90950 1.52510 1.60797 1.39055 1.42963 1.14934 1.63238 1.12942 1.17634 0.84848 0.91305 0.95053 1.22190 1.00062 0.95484 1.02710 1.22550 0.87263 0.98540 0.96447 1.67616 1.34395 1.09544 1.05492 1.19733 0.90742 0.95283 0.97661 1.20450 0.82515 0.79838 0.78990 1.90977 1.85062 1.26718 1.35258 1.84663 1.18770 1.60264 1.66922 1.22411 0.89538 1.01349 0.99592 0.88134 0.88639 0.87757 0.88740 0.91533 0.94546 0.93610 0.92580 0.75409 0.83857 0.81620 0.73143 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 14.32 29.01 0.42 -1.61 16 2 C -0.17 -2.21 9.85 -36.02 -0.35 -2.56 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.60 -11.90 2.44 -182.19 -0.44 -12.34 16 5 C 0.26 6.60 5.16 -5.19 -0.03 6.58 16 6 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 7 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.70 13.94 8.14 -86.91 -0.71 13.23 16 15 O -0.56 -13.79 13.41 5.29 0.07 -13.71 16 16 N -0.69 -10.05 5.22 -14.08 -0.07 -10.12 16 17 C 0.22 3.10 6.34 -83.51 -0.53 2.57 16 18 C -0.18 -1.86 10.06 -39.14 -0.39 -2.25 16 19 C 0.11 1.17 11.17 -17.63 -0.20 0.97 16 20 N -0.46 -6.25 10.12 -9.89 -0.10 -6.35 16 21 C 0.10 1.58 6.74 -83.06 -0.56 1.02 16 22 C 0.54 8.32 8.32 34.77 0.29 8.61 16 23 O -0.49 -9.11 17.11 -19.21 -0.33 -9.44 16 24 O -0.50 -5.79 13.24 -40.44 -0.54 -6.32 16 25 C -0.11 -1.79 8.29 -38.83 -0.32 -2.11 16 26 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.10 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 30 H 0.07 0.75 6.30 -51.93 -0.33 0.43 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.41 4.43 6.52 -40.82 -0.27 4.17 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.41 2.65 9.11 45.56 0.42 3.07 16 38 H 0.17 3.50 5.90 -52.48 -0.31 3.19 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -36.13 341.80 -6.72 -42.86 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.34 Total: 5.95 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -2.84 Total: 13.08 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.12 Total: -54.29 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.79 Total: -29.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.13 -6.72 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588463564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.190 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds