Wall clock time and date at job start Tue Mar 31 2020 08:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00182 * 2 1 4 4 N 1.46495 * 109.47119 * 124.99335 * 3 2 1 5 5 C 1.46501 * 120.00211 * 270.00314 * 4 3 2 6 6 C 1.50703 * 109.47069 * 269.99958 * 5 4 3 7 7 H 1.08006 * 120.00032 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00295 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99442 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00011 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47720 * 59.99571 * 10 8 6 12 12 H 1.48501 * 109.47229 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46953 * 299.99523 * 10 8 6 14 14 C 1.34782 * 120.00020 * 89.99961 * 4 3 2 15 15 O 1.21581 * 120.00076 * 179.97438 * 14 4 3 16 16 N 1.34776 * 120.00017 * 0.02562 * 14 4 3 17 17 C 1.39550 * 120.00058 * 184.64292 * 16 14 4 18 18 C 1.39355 * 120.82158 * 145.03914 * 17 16 14 19 19 C 1.38301 * 119.27027 * 180.02562 * 18 17 16 20 20 N 1.31605 * 120.99878 * 0.02562 * 19 18 17 21 21 C 1.32841 * 121.80704 * 359.72615 * 20 19 18 22 22 C 1.48080 * 119.69701 * 180.26688 * 21 20 19 23 23 O 1.21425 * 120.00411 * 180.26445 * 22 21 20 24 24 O 1.34680 * 119.99595 * 0.26726 * 22 21 20 25 25 C 1.39123 * 120.60966 * 0.53598 * 21 20 19 26 26 H 1.08000 * 119.99961 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99876 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99961 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46938 * 4.99724 * 3 2 1 30 30 H 1.09000 * 109.46894 * 244.99723 * 3 2 1 31 31 H 1.08996 * 109.47429 * 29.99747 * 5 4 3 32 32 H 1.09005 * 109.47287 * 150.00208 * 5 4 3 33 33 H 0.97005 * 119.99313 * 180.02562 * 9 8 6 34 34 H 0.97010 * 119.99383 * 4.64609 * 16 14 4 35 35 H 1.07990 * 120.36240 * 0.02562 * 18 17 16 36 36 H 1.08004 * 119.49908 * 179.97438 * 19 18 17 37 37 H 0.96698 * 116.99970 * 180.02562 * 24 22 21 38 38 H 1.08004 * 120.51572 * 179.75218 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5192 4.0667 3.6086 9 7 1.9597 3.4659 4.6360 10 14 2.8723 5.8997 3.6771 11 1 2.1357 6.5869 2.5861 12 1 2.4315 6.4401 4.9881 13 1 4.3301 6.1294 3.5113 14 6 4.2497 0.8661 0.9826 15 8 5.0217 0.8888 1.9215 16 7 4.6500 0.3761 -0.2074 17 6 5.9169 -0.1946 -0.3364 18 6 6.1281 -1.2798 -1.1848 19 6 7.3968 -1.8207 -1.2878 20 7 8.4024 -1.3265 -0.5975 21 6 8.2487 -0.2903 0.2194 22 6 9.4140 0.2318 0.9693 23 8 9.2789 1.1756 1.7212 24 8 10.6238 -0.3403 0.8173 25 6 7.0020 0.3054 0.3812 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4886 1.6968 2.5459 32 1 3.0988 1.3604 3.2261 33 1 1.7307 3.9747 5.4296 34 1 4.0575 0.4203 -0.9742 35 1 5.3102 -1.6937 -1.7557 36 1 7.5646 -2.6621 -1.9439 37 1 11.3541 0.0350 1.3280 38 1 6.8779 1.1453 1.0488 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588463564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:17 Heat of formation + Delta-G solvation = -69.823182 kcal Electronic energy + Delta-G solvation = -24418.075502 eV Core-core repulsion = 20646.980724 eV Total energy + Delta-G solvation = -3771.094778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22298 -41.32425 -40.25579 -37.52706 -37.22117 -36.49256 -35.04947 -33.78833 -32.65777 -31.97278 -29.40956 -27.03540 -26.53709 -25.57613 -24.11307 -22.72676 -21.56552 -20.84081 -19.73210 -19.25628 -18.72684 -18.56608 -17.58457 -17.21290 -16.93523 -16.87977 -16.64011 -16.38654 -15.97910 -15.43440 -15.13081 -15.06763 -14.60183 -14.50922 -14.38987 -14.14515 -13.36309 -13.27560 -13.10755 -12.91605 -12.69789 -12.60798 -12.32983 -12.22947 -12.16528 -12.01249 -11.71827 -11.35627 -10.67441 -10.65190 -10.35767 -10.33514 -9.95329 -9.43205 -8.23565 -6.37649 -0.61727 0.09045 1.20668 1.27831 1.35212 1.39958 1.46594 1.62271 1.85249 2.07562 2.37294 2.74542 2.90848 3.07143 3.30612 3.79972 3.85127 3.89921 4.00806 4.18389 4.31516 4.40795 4.42838 4.71446 4.77860 4.87812 4.99721 5.05339 5.17621 5.24552 5.39298 5.46046 5.60863 5.68787 5.72354 5.87722 5.96540 6.03673 6.62733 6.70544 6.90634 6.94048 7.28482 7.49813 8.83161 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004541 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.436741 B = 6164.786686 C = 8132.580259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.131 3.869 4 N -0.602 5.602 5 C 0.281 3.719 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.963 3.037 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.283 1.283 14 C 0.693 3.307 15 O -0.616 6.616 16 N -0.667 5.667 17 C 0.195 3.805 18 C -0.143 4.143 19 C 0.121 3.879 20 N -0.463 5.463 21 C 0.084 3.916 22 C 0.544 3.456 23 O -0.540 6.540 24 O -0.483 6.483 25 C -0.133 4.133 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.030 0.970 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.428 0.572 35 H 0.195 0.805 36 H 0.219 0.781 37 H 0.432 0.568 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -12.162 -18.496 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.009 3.991 4 N -0.335 5.335 5 C 0.159 3.841 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.787 3.213 11 H -0.182 1.182 12 H -0.203 1.203 13 H -0.209 1.209 14 C 0.394 3.606 15 O -0.495 6.495 16 N -0.319 5.319 17 C 0.090 3.910 18 C -0.166 4.166 19 C -0.039 4.039 20 N -0.177 5.177 21 C -0.050 4.050 22 C 0.387 3.613 23 O -0.430 6.430 24 O -0.296 6.296 25 C -0.157 4.157 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.270 0.730 35 H 0.213 0.787 36 H 0.236 0.764 37 H 0.294 0.706 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.499 -12.296 -17.661 22.211 hybrid contribution -0.501 1.951 1.093 2.292 sum 4.998 -10.345 -16.568 20.162 Atomic orbital electron populations 1.24073 0.95571 1.02960 0.97612 1.23299 0.96821 0.98002 1.02448 1.20855 0.92797 0.97063 0.88353 1.47429 1.09574 1.62325 1.14193 1.18659 0.94043 0.92349 0.79015 1.21683 1.40647 0.94522 1.01429 0.92904 1.25779 0.94673 1.03456 0.94875 1.70033 1.42689 1.38079 1.05724 0.85545 0.78237 0.79466 0.78021 1.18186 1.20293 1.20933 1.16161 0.82974 0.78593 0.82840 1.90927 1.54047 1.62913 1.41586 1.42474 1.15414 1.62417 1.11573 1.17897 0.83630 0.93021 0.96458 1.22687 1.01562 0.92373 0.99968 1.23512 0.86340 0.98763 0.95312 1.67694 1.35903 1.08663 1.05406 1.19646 0.90142 0.96351 0.98875 1.20608 0.83477 0.79091 0.78141 1.90952 1.85848 1.28827 1.37342 1.84610 1.18356 1.59642 1.66947 1.22136 0.91716 1.01288 1.00563 0.88281 0.86503 0.86586 0.89750 0.87913 0.95169 0.98446 0.92398 0.72989 0.78740 0.76416 0.70596 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.19 -4.31 9.85 25.65 0.25 -4.06 16 3 C 0.13 3.68 5.65 85.63 0.48 4.16 16 4 N -0.60 -24.60 2.44 -848.57 -2.07 -26.67 16 5 C 0.28 14.93 5.16 85.63 0.44 15.37 16 6 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.67 5.46 84.66 0.46 1.13 16 9 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 10 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.69 28.68 8.14 179.05 1.46 30.14 16 15 O -0.62 -32.69 13.41 -3.97 -0.05 -32.75 16 16 N -0.67 -18.72 5.22 -316.73 -1.65 -20.37 16 17 C 0.19 5.31 6.34 38.45 0.24 5.56 16 18 C -0.14 -2.28 10.06 22.55 0.23 -2.05 16 19 C 0.12 1.93 11.17 84.74 0.95 2.88 16 20 N -0.46 -11.60 10.12 -185.21 -1.87 -13.47 16 21 C 0.08 2.67 6.74 41.82 0.28 2.95 16 22 C 0.54 17.48 8.32 70.43 0.59 18.07 16 23 O -0.54 -21.55 17.11 20.08 0.34 -21.21 16 24 O -0.48 -11.12 13.24 -55.90 -0.74 -11.86 16 25 C -0.13 -4.72 8.29 22.75 0.19 -4.54 16 26 H 0.10 2.09 7.84 -2.91 -0.02 2.06 16 27 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.08 2.54 7.72 -2.39 -0.02 2.52 16 30 H 0.10 2.07 6.30 -2.39 -0.02 2.05 16 31 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 32 H 0.00 -0.16 7.42 -2.38 -0.02 -0.18 16 33 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 34 H 0.43 8.06 6.52 -92.70 -0.60 7.45 16 35 H 0.20 1.15 8.06 -2.92 -0.02 1.13 16 36 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.43 5.39 9.11 -74.06 -0.67 4.71 16 38 H 0.12 5.59 5.90 -2.91 -0.02 5.58 16 Total: -1.00 -86.93 341.80 2.89 -84.04 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.16 Total: 14.42 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 6.78 Total: 36.16 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.31 Total: -116.31 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: -0.45 Total: -65.81 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -86.93 2.89 -84.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588463564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.216 kcal (2) G-P(sol) polarization free energy of solvation -86.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds