Wall clock time and date at job start Tue Mar 31 2020 08:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50702 * 120.00076 * 2 1 4 4 N 1.46502 * 109.46686 * 125.00182 * 3 2 1 5 5 C 1.46500 * 120.00290 * 269.99841 * 4 3 2 6 6 C 1.50691 * 109.47208 * 270.00181 * 5 4 3 7 7 H 1.08001 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99740 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00416 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46953 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47155 * 120.00119 * 10 8 6 13 13 H 1.48500 * 109.47475 * 240.00480 * 10 8 6 14 14 C 1.34776 * 119.99443 * 90.00428 * 4 3 2 15 15 O 1.21575 * 119.99642 * 179.97438 * 14 4 3 16 16 N 1.34775 * 120.00408 * 359.97438 * 14 4 3 17 17 C 1.38912 * 120.00188 * 185.08970 * 16 14 4 18 18 C 1.39289 * 119.52611 * 174.83085 * 17 16 14 19 19 C 1.36908 * 119.38889 * 179.97438 * 18 17 16 20 20 C 1.40345 * 118.48097 * 0.02562 * 19 18 17 21 21 C 1.47453 * 120.49148 * 179.97438 * 20 19 18 22 22 O 1.21513 * 119.99927 * 0.02562 * 21 20 19 23 23 O 1.34750 * 120.00251 * 180.02562 * 21 20 19 24 24 C 1.39617 * 119.02099 * 0.02562 * 20 19 18 25 25 N 1.31666 * 120.50744 * 0.02562 * 24 20 19 26 26 H 1.07992 * 119.99982 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99711 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99711 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46743 * 5.00735 * 3 2 1 30 30 H 1.08996 * 109.47141 * 245.00660 * 3 2 1 31 31 H 1.09001 * 109.46509 * 30.00410 * 5 4 3 32 32 H 1.09000 * 109.46782 * 150.00207 * 5 4 3 33 33 H 0.96993 * 120.00180 * 179.97438 * 9 8 6 34 34 H 0.97000 * 119.99772 * 5.09730 * 16 14 4 35 35 H 1.08000 * 120.30480 * 0.26010 * 18 17 16 36 36 H 1.08001 * 120.76004 * 180.02562 * 19 18 17 37 37 H 0.96696 * 116.99703 * 180.02562 * 23 21 20 38 38 H 1.08004 * 119.74817 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5591 1.8648 2.4249 6 6 2.8445 3.3433 2.4806 7 1 3.3035 3.8368 1.6366 8 6 2.5188 4.0665 3.6084 9 7 1.9594 3.4656 4.6359 10 14 2.8720 5.8994 3.6772 11 1 3.4998 6.3307 2.4024 12 1 1.6013 6.6411 3.8784 13 1 3.7951 6.1838 4.8051 14 6 4.2498 0.8660 0.9822 15 8 5.0219 0.8886 1.9210 16 7 4.6497 0.3753 -0.2076 17 6 5.9072 -0.2011 -0.3340 18 6 6.2693 -0.8016 -1.5375 19 6 7.5096 -1.3685 -1.6591 20 6 8.3771 -1.3233 -0.5568 21 6 9.7228 -1.9204 -0.6389 22 8 10.0881 -2.4562 -1.6665 23 8 10.5475 -1.8719 0.4257 24 6 7.9466 -0.7056 0.6190 25 7 6.7445 -0.1737 0.6931 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4027 -0.9314 31 1 1.4889 1.6964 2.5460 32 1 3.0992 1.3600 3.2259 33 1 1.7305 3.9741 5.4295 34 1 4.0594 0.4248 -0.9757 35 1 5.5797 -0.8159 -2.3686 36 1 7.8134 -1.8396 -2.5823 37 1 11.4198 -2.2765 0.3240 38 1 8.6048 -0.6638 1.4743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:10 Heat of formation + Delta-G solvation = -60.134703 kcal Electronic energy + Delta-G solvation = -24116.988055 eV Core-core repulsion = 20346.313401 eV Total energy + Delta-G solvation = -3770.674654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15181 -41.19853 -40.15161 -37.32149 -37.07041 -36.17505 -34.98124 -33.77280 -33.56184 -31.66989 -29.44740 -27.04202 -26.14260 -25.09294 -24.45183 -22.58399 -21.40338 -20.78611 -19.69467 -19.17306 -18.63745 -18.46924 -18.25597 -17.01120 -16.86448 -16.74745 -16.52082 -16.06181 -15.74404 -15.42933 -15.17919 -14.78325 -14.53901 -14.29043 -14.16684 -14.03108 -13.74263 -13.30611 -13.08113 -12.87174 -12.59882 -12.58888 -12.27744 -12.20482 -11.93040 -11.85855 -11.63181 -11.30201 -11.05342 -10.62897 -10.33928 -10.13454 -9.66219 -9.28341 -8.20160 -6.34345 -0.51790 0.27700 1.21591 1.37419 1.40347 1.45493 1.51612 1.64253 2.09915 2.21456 2.40213 2.85338 2.88341 3.09885 3.44200 3.75354 3.82340 3.88830 4.03540 4.21606 4.32059 4.34785 4.58133 4.72774 4.81574 4.96992 5.03870 5.05636 5.14260 5.22359 5.50772 5.56814 5.64191 5.68846 5.73221 5.83854 5.96115 6.07949 6.71746 6.75645 6.99169 7.15584 7.33146 7.66056 8.86826 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015314 B = 0.003573 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.904475 B = 7834.814784 C = 9183.178932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.607 5.607 5 C 0.282 3.718 6 C -0.540 4.540 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.284 1.284 14 C 0.684 3.316 15 O -0.573 6.573 16 N -0.652 5.652 17 C 0.398 3.602 18 C -0.203 4.203 19 C 0.022 3.978 20 C -0.236 4.236 21 C 0.549 3.451 22 O -0.546 6.546 23 O -0.507 6.507 24 C 0.191 3.809 25 N -0.533 5.533 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.028 0.972 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.431 0.569 35 H 0.188 0.812 36 H 0.175 0.825 37 H 0.435 0.565 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -10.773 -16.875 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.010 3.990 4 N -0.342 5.342 5 C 0.161 3.839 6 C -0.579 4.579 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.194 1.194 13 H -0.210 1.210 14 C 0.384 3.616 15 O -0.447 6.447 16 N -0.302 5.302 17 C 0.165 3.835 18 C -0.226 4.226 19 C -0.003 4.003 20 C -0.242 4.242 21 C 0.394 3.606 22 O -0.438 6.438 23 O -0.321 6.321 24 C 0.031 3.969 25 N -0.248 5.248 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.273 0.727 35 H 0.206 0.794 36 H 0.193 0.807 37 H 0.297 0.703 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.295 -10.205 -15.403 19.520 hybrid contribution 0.615 0.346 -0.316 0.773 sum 6.910 -9.859 -15.719 19.800 Atomic orbital electron populations 1.24064 0.95516 1.02959 0.97660 1.23310 0.96879 0.98044 1.02431 1.20829 0.92877 0.96824 0.88489 1.47496 1.09633 1.63002 1.14083 1.18626 0.93862 0.92382 0.79068 1.21740 1.40349 0.94473 1.01354 0.92902 1.25805 0.94731 1.03534 0.94887 1.70052 1.42907 1.37963 1.05767 0.85395 0.78153 0.79342 0.78050 1.19267 1.19363 1.20997 1.16252 0.82984 0.79160 0.83159 1.90995 1.53291 1.60138 1.40253 1.42842 1.15291 1.59706 1.12394 1.18986 0.85070 0.88788 0.90635 1.21440 0.99647 1.03920 0.97584 1.21435 0.90359 0.90799 0.97702 1.20070 0.94613 1.11108 0.98378 1.20359 0.84842 0.75073 0.80276 1.90873 1.76738 1.44087 1.32094 1.84548 1.31644 1.75221 1.40666 1.23283 0.90169 0.86872 0.96583 1.67870 1.04748 1.21403 1.30733 0.86658 0.88080 0.87083 0.89686 0.88004 0.95449 0.98469 0.92445 0.72727 0.79448 0.80727 0.70292 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 14.32 67.77 0.97 -2.61 16 2 C -0.19 -4.58 9.85 25.64 0.25 -4.33 16 3 C 0.13 3.80 5.66 85.63 0.48 4.28 16 4 N -0.61 -25.25 2.44 -848.60 -2.07 -27.32 16 5 C 0.28 15.08 5.16 85.63 0.44 15.52 16 6 C -0.54 -30.94 9.39 25.60 0.24 -30.69 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.54 5.46 84.66 0.46 1.01 16 9 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 10 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.68 29.04 8.23 179.05 1.47 30.52 16 15 O -0.57 -30.83 14.16 -3.95 -0.06 -30.88 16 16 N -0.65 -19.28 5.25 -322.27 -1.69 -20.97 16 17 C 0.40 11.49 7.41 133.09 0.99 12.48 16 18 C -0.20 -3.68 9.86 22.21 0.22 -3.46 16 19 C 0.02 0.41 9.65 22.47 0.22 0.62 16 20 C -0.24 -5.31 5.89 -20.00 -0.12 -5.43 16 21 C 0.55 11.40 8.27 70.25 0.58 11.98 16 22 O -0.55 -13.37 17.20 19.79 0.34 -13.03 16 23 O -0.51 -7.80 12.70 -56.61 -0.72 -8.52 16 24 C 0.19 5.32 10.79 85.05 0.92 6.24 16 25 N -0.53 -18.94 7.85 -192.05 -1.51 -20.45 16 26 H 0.12 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.10 2.19 7.84 -2.91 -0.02 2.17 16 28 H 0.11 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.08 2.59 7.72 -2.39 -0.02 2.57 16 30 H 0.10 2.11 6.29 -2.39 -0.02 2.09 16 31 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 32 H 0.00 -0.18 7.42 -2.39 -0.02 -0.19 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.43 8.58 6.38 -92.71 -0.59 7.99 16 35 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.18 2.31 7.73 -2.91 -0.02 2.28 16 37 H 0.43 2.39 9.11 -74.06 -0.67 1.71 16 38 H 0.18 4.41 7.61 -2.91 -0.02 4.38 16 Total: -1.00 -84.27 342.14 3.59 -80.68 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.15 Total: 12.96 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 7.13 Total: 36.13 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -4.98 Total: -124.35 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.43 Total: -52.43 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -84.27 3.59 -80.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.548 kcal (2) G-P(sol) polarization free energy of solvation -84.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds