Wall clock time and date at job start Tue Mar 31 2020 08:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34866 * 119.99767 * 2 1 4 4 C 1.46410 * 120.00220 * 7.37165 * 3 2 1 5 5 O 1.21740 * 120.00138 * 5.01681 * 4 3 2 6 6 N 1.34783 * 120.00315 * 185.01183 * 4 3 2 7 7 C 1.36622 * 119.99538 * 5.17883 * 6 4 3 8 8 H 1.07999 * 120.00392 * 318.53928 * 7 6 4 9 9 C 1.39194 * 119.99952 * 138.53772 * 7 6 4 10 10 N 1.31275 * 120.00300 * 163.15728 * 9 7 6 11 11 Si 1.86799 * 119.99890 * 343.16197 * 9 7 6 12 12 H 1.48496 * 109.47638 * 92.54583 * 11 9 7 13 13 H 1.48503 * 109.47292 * 212.55143 * 11 9 7 14 14 H 1.48502 * 109.46856 * 332.54884 * 11 9 7 15 15 C 1.46498 * 120.00065 * 185.18348 * 6 4 3 16 16 C 1.52999 * 109.47132 * 90.00197 * 15 6 4 17 17 C 1.50696 * 109.47073 * 179.97438 * 16 15 6 18 18 O 1.20830 * 119.99933 * 359.97438 * 17 16 15 19 19 O 1.34227 * 120.00400 * 179.97438 * 17 16 15 20 20 C 1.47264 * 119.99860 * 179.97438 * 2 1 3 21 21 C 1.39876 * 120.14062 * 3.61485 * 20 2 1 22 22 N 1.31966 * 119.82881 * 179.97438 * 21 20 2 23 23 C 1.32219 * 120.11044 * 0.02562 * 22 21 20 24 24 C 1.38645 * 120.28441 * 359.97357 * 23 22 21 25 25 N 1.31856 * 120.17146 * 359.76866 * 24 23 22 26 26 H 1.08993 * 109.47532 * 274.71422 * 1 2 3 27 27 H 1.09002 * 109.47049 * 154.71320 * 1 2 3 28 28 H 1.08997 * 109.47145 * 34.71774 * 1 2 3 29 29 H 1.07997 * 119.99679 * 187.37147 * 3 2 1 30 30 H 0.96995 * 120.00120 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.46622 * 209.99610 * 15 6 4 32 32 H 1.08999 * 109.47222 * 329.99920 * 15 6 4 33 33 H 1.09006 * 109.47048 * 299.99781 * 16 15 6 34 34 H 1.08997 * 109.47779 * 59.99567 * 16 15 6 35 35 H 0.96700 * 117.00515 * 180.02562 * 19 17 16 36 36 H 1.08006 * 120.08889 * 359.97438 * 21 20 2 37 37 H 1.07997 * 119.86097 * 179.97438 * 23 22 21 38 38 H 1.08004 * 119.91356 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1813 1.1680 0.0000 4 6 1.4583 2.4307 0.1627 5 8 0.2622 2.4225 0.3891 6 7 2.1170 3.6023 0.0618 7 6 3.4353 3.6160 -0.2963 8 1 4.1138 2.8821 0.1129 9 6 3.9042 4.5760 -1.1886 10 7 5.1924 4.8098 -1.2842 11 14 2.7002 5.5317 -2.2500 12 1 2.3252 6.7925 -1.5608 13 1 3.3348 5.8503 -3.5542 14 1 1.4833 4.7119 -2.4788 15 6 1.4192 4.8609 0.3363 16 6 1.5547 5.2059 1.8208 17 6 0.8376 6.5008 2.1030 18 8 0.2761 7.0879 1.2085 19 8 0.8224 7.0022 3.3480 20 6 2.2433 -1.2754 0.0006 21 6 1.5489 -2.4873 -0.0752 22 7 2.2150 -3.6265 -0.0747 23 6 3.5352 -3.6230 -0.0024 24 6 4.2281 -2.4245 0.0728 25 7 3.5742 -1.2795 0.0681 26 1 -0.3634 0.0845 1.0241 27 1 -0.3633 -0.9292 -0.4390 28 1 -0.3633 0.8447 -0.5853 29 1 3.2546 1.1718 -0.1200 30 1 5.5190 5.4790 -1.9057 31 1 1.8585 5.6580 -0.2635 32 1 0.3645 4.7544 0.0828 33 1 1.1156 4.4087 2.4206 34 1 2.6094 5.3124 2.0743 35 1 0.3493 7.8351 3.4802 36 1 0.4705 -2.4907 -0.1338 37 1 4.0761 -4.5577 -0.0019 38 1 5.3065 -2.4286 0.1313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588933700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:16 Heat of formation + Delta-G solvation = -68.453138 kcal Electronic energy + Delta-G solvation = -24451.385490 eV Core-core repulsion = 20680.350122 eV Total energy + Delta-G solvation = -3771.035368 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98084 -41.46056 -40.69236 -37.60664 -37.07618 -36.14176 -34.90146 -34.22499 -32.73990 -31.48920 -28.99954 -26.99782 -26.53366 -25.63026 -24.96523 -22.47612 -21.70649 -20.46381 -19.28711 -18.64367 -18.44614 -17.98673 -17.88602 -17.74045 -17.11786 -16.83069 -16.19268 -16.04148 -15.70693 -15.69578 -15.10606 -14.81243 -14.50456 -14.31014 -14.06440 -13.77366 -13.71749 -13.53449 -13.17184 -12.98439 -12.83110 -12.62958 -12.60514 -12.38009 -12.34625 -11.96625 -11.82450 -11.69945 -11.15884 -11.01531 -10.44235 -10.02814 -9.81336 -9.42175 -8.54832 -6.20173 -0.69201 0.11063 0.84164 1.12154 1.19144 1.28527 1.36806 1.91436 2.12590 2.32797 2.68638 2.83374 2.95860 3.03537 3.33260 3.50451 3.78984 3.80613 3.88281 4.11478 4.26556 4.31307 4.32946 4.47629 4.53192 4.56759 4.66184 4.79786 4.84695 4.93386 5.19958 5.38407 5.41928 5.48499 5.53291 5.61249 6.04955 6.18621 6.32281 6.81000 6.89947 6.94564 7.33466 7.68589 8.58258 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.004145 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.322597 B = 6754.168239 C = 7670.937760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.033 4.033 3 C -0.148 4.148 4 C 0.506 3.494 5 O -0.594 6.594 6 N -0.465 5.465 7 C -0.338 4.338 8 H 0.091 0.909 9 C 0.040 3.960 10 N -0.889 5.889 11 Si 0.914 3.086 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.271 1.271 15 C 0.109 3.891 16 C -0.118 4.118 17 C 0.497 3.503 18 O -0.552 6.552 19 O -0.504 6.504 20 C 0.093 3.907 21 C 0.064 3.936 22 N -0.454 5.454 23 C 0.055 3.945 24 C 0.054 3.946 25 N -0.463 5.463 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.281 0.719 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.429 0.571 36 H 0.195 0.805 37 H 0.212 0.788 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 -9.982 5.457 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.170 4.170 4 C 0.299 3.701 5 O -0.481 6.481 6 N -0.185 5.185 7 C -0.466 4.466 8 H 0.109 0.891 9 C -0.165 4.165 10 N -0.525 5.525 11 Si 0.741 3.259 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.196 1.196 15 C -0.014 4.014 16 C -0.156 4.156 17 C 0.340 3.660 18 O -0.443 6.443 19 O -0.318 6.318 20 C -0.043 4.043 21 C -0.095 4.095 22 N -0.168 5.168 23 C -0.105 4.105 24 C -0.108 4.108 25 N -0.179 5.179 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.291 0.709 36 H 0.212 0.788 37 H 0.228 0.772 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.442 -10.050 5.178 12.147 hybrid contribution -0.136 1.570 -0.647 1.703 sum -4.578 -8.480 4.531 10.649 Atomic orbital electron populations 1.20980 0.88307 1.03164 1.03577 1.20916 0.96547 0.89456 0.96723 1.22935 1.01148 0.91288 1.01632 1.18667 0.86115 0.85196 0.80074 1.90635 1.14851 1.88068 1.54548 1.43539 1.10503 1.03951 1.60496 1.18914 0.83018 1.18592 1.26095 0.89097 1.25785 0.96425 0.97592 0.96714 1.69681 1.14085 1.32821 1.35959 0.86344 0.80190 0.79849 0.79476 1.19199 1.20773 1.19563 1.21397 0.97995 0.87314 0.94718 1.21569 1.03110 0.92808 0.98129 1.23274 0.76448 0.86311 0.79930 1.90702 1.44527 1.61636 1.47427 1.84500 1.72227 1.44546 1.30521 1.20868 0.90438 0.94555 0.98438 1.24181 1.02857 0.87028 0.95396 1.68535 1.09931 1.29058 1.09282 1.24546 0.90607 1.01113 0.94276 1.24431 1.03493 0.87903 0.95016 1.68541 1.08559 1.31871 1.08886 0.90296 0.89565 0.90803 0.85305 0.90911 0.92026 0.90783 0.86440 0.86352 0.70924 0.78817 0.77190 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.05 8.19 71.24 0.58 -2.47 16 2 C -0.03 -1.11 6.05 -18.26 -0.11 -1.22 16 3 C -0.15 -6.08 8.81 23.62 0.21 -5.87 16 4 C 0.51 22.87 7.43 86.37 0.64 23.51 16 5 O -0.59 -27.03 12.85 -4.47 -0.06 -27.09 16 6 N -0.46 -21.91 2.12 -640.39 -1.36 -23.27 16 7 C -0.34 -17.40 8.94 84.18 0.75 -16.64 16 8 H 0.09 4.97 6.87 -2.91 -0.02 4.95 16 9 C 0.04 2.12 5.37 85.01 0.46 2.58 16 10 N -0.89 -48.70 13.95 21.70 0.30 -48.40 16 11 Si 0.91 43.35 24.95 68.60 1.71 45.06 16 12 H -0.27 -12.40 6.64 99.48 0.66 -11.74 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.11 4.79 3.49 86.38 0.30 5.09 16 16 C -0.12 -4.22 6.13 29.85 0.18 -4.04 16 17 C 0.50 16.36 8.33 71.23 0.59 16.95 16 18 O -0.55 -21.64 16.74 21.95 0.37 -21.27 16 19 O -0.50 -12.10 13.42 -51.39 -0.69 -12.79 16 20 C 0.09 2.81 6.70 41.70 0.28 3.09 16 21 C 0.06 1.55 10.58 85.07 0.90 2.45 16 22 N -0.45 -10.29 10.49 -193.86 -2.03 -12.32 16 23 C 0.05 0.98 11.22 84.73 0.95 1.93 16 24 C 0.05 1.15 11.22 84.79 0.95 2.10 16 25 N -0.46 -14.29 9.54 -184.68 -1.76 -16.05 16 26 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 27 H 0.09 1.82 6.12 -2.39 -0.01 1.81 16 28 H 0.07 2.58 6.09 -2.39 -0.01 2.57 16 29 H 0.13 5.71 5.90 -2.91 -0.02 5.70 16 30 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.06 2.89 3.25 -2.38 -0.01 2.88 16 32 H 0.07 3.34 7.31 -2.39 -0.02 3.33 16 33 H 0.12 3.94 8.14 -2.38 -0.02 3.92 16 34 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 35 H 0.43 5.94 9.10 -74.06 -0.67 5.26 16 36 H 0.20 3.58 6.19 -2.91 -0.02 3.56 16 37 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -70.10 326.99 3.59 -66.51 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.42 Total: 22.15 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 6.69 Total: 27.47 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.85 Total: -100.04 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.38 Total: -61.15 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.71 Total: 45.06 kcal Total: -70.10 3.59 -66.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588933700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.942 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds