Wall clock time and date at job start Tue Mar 31 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36952 * 120.75791 * 2 1 4 4 C 1.39258 * 119.38870 * 179.97438 * 3 2 1 5 5 N 1.38908 * 119.52264 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99682 * 185.76187 * 5 4 3 7 7 O 1.21564 * 120.00368 * 355.67230 * 6 5 4 8 8 N 1.34780 * 119.99385 * 175.40110 * 6 5 4 9 9 C 1.47066 * 136.06076 * 359.62799 * 8 6 5 10 10 C 1.53755 * 87.88808 * 152.96580 * 9 8 6 11 11 C 1.50694 * 114.26766 * 139.79081 * 10 9 8 12 12 H 1.08001 * 120.00583 * 266.47350 * 11 10 9 13 13 C 1.37876 * 120.00013 * 86.47827 * 11 10 9 14 14 N 1.31517 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00195 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47074 * 59.99684 * 15 13 11 17 17 H 1.48497 * 109.47304 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47059 * 299.99908 * 15 13 11 19 19 C 1.47068 * 136.05341 * 179.97438 * 8 6 5 20 20 N 1.32574 * 120.94744 * 0.28363 * 4 3 2 21 21 C 1.31632 * 121.66005 * 359.42630 * 20 4 3 22 22 C 1.39665 * 120.49862 * 0.56810 * 21 20 4 23 23 C 1.47458 * 120.48701 * 179.69863 * 22 21 20 24 24 O 1.21507 * 119.99606 * 178.13525 * 23 22 21 25 25 O 1.34750 * 120.00111 * 358.13258 * 23 22 21 26 26 H 1.09004 * 109.47472 * 96.93444 * 1 2 3 27 27 H 1.09004 * 109.46689 * 216.93605 * 1 2 3 28 28 H 1.08996 * 109.47567 * 336.93422 * 1 2 3 29 29 H 1.07989 * 120.30666 * 359.96346 * 3 2 1 30 30 H 0.96995 * 120.00016 * 5.76435 * 5 4 3 31 31 H 1.09004 * 113.46548 * 267.69595 * 9 8 6 32 32 H 1.09002 * 113.46504 * 38.13563 * 9 8 6 33 33 H 1.09004 * 114.39413 * 272.67868 * 10 9 8 34 34 H 0.97003 * 120.00244 * 180.02562 * 14 13 11 35 35 H 1.08999 * 113.46789 * 321.86583 * 19 8 6 36 36 H 1.09001 * 113.46830 * 92.24734 * 19 8 6 37 37 H 1.07995 * 119.74999 * 180.31067 * 21 20 4 38 38 H 0.96697 * 116.99792 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1769 0.0000 4 6 3.5995 1.1436 0.0005 5 7 4.3127 2.3356 0.0011 6 6 5.6553 2.3176 -0.1156 7 8 6.2490 1.2572 -0.1421 8 7 6.3392 3.4753 -0.2084 9 6 6.0010 4.9065 -0.2264 10 6 7.3981 5.1857 0.3517 11 6 8.0813 6.3936 -0.2356 12 1 8.7529 6.2801 -1.0739 13 6 7.8493 7.6439 0.2971 14 7 7.0313 7.7824 1.3176 15 14 8.6967 9.1413 -0.4304 16 1 8.3126 9.2826 -1.8579 17 1 8.2820 10.3562 0.3159 18 1 10.1688 8.9753 -0.3281 19 6 7.7515 3.8631 -0.3422 20 7 4.2539 -0.0094 -0.0046 21 6 3.6206 -1.1633 0.0009 22 6 2.2246 -1.2057 0.0004 23 6 1.5154 -2.4985 -0.0002 24 8 0.3011 -2.5253 0.0337 25 8 2.2139 -3.6502 -0.0383 26 1 -0.3634 -0.1241 -1.0202 27 1 -0.3633 -0.8215 0.6176 28 1 -0.3634 0.9454 0.4026 29 1 1.6849 2.1220 -0.0006 30 1 3.8445 3.1809 0.0855 31 1 5.8589 5.3063 -1.2305 32 1 5.1887 5.1691 0.4513 33 1 7.4511 5.1472 1.4397 34 1 6.8677 8.6621 1.6922 35 1 8.4303 3.2370 0.2368 36 1 8.0715 3.9867 -1.3769 37 1 4.1847 -2.0842 0.0015 38 1 1.7051 -4.4725 -0.0366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607681214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:30 Heat of formation + Delta-G solvation = -27.533515 kcal Electronic energy + Delta-G solvation = -23822.777642 eV Core-core repulsion = 20053.516681 eV Total energy + Delta-G solvation = -3769.260960 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21503 -40.19272 -39.26526 -37.48731 -36.42348 -34.80299 -33.85803 -32.76006 -30.89866 -28.98443 -28.16593 -25.47992 -25.06223 -24.38378 -23.08834 -21.88309 -20.45018 -19.35218 -18.34265 -17.93570 -17.35077 -17.10079 -16.68712 -16.02609 -15.96695 -15.30924 -15.02603 -14.65179 -14.56642 -14.20660 -13.90273 -13.59079 -13.16386 -12.95019 -12.80373 -12.68417 -12.53717 -12.30123 -11.79061 -11.62196 -11.43852 -11.01973 -10.89653 -10.74277 -10.56381 -10.40651 -10.14239 -9.77397 -9.44268 -9.26680 -8.98765 -8.65262 -8.50583 -7.89060 -6.24953 -4.30866 0.41213 1.10978 2.33750 2.52153 2.82081 3.21340 3.27135 3.29393 3.40687 3.84664 3.97520 4.27860 4.34848 4.46454 4.63910 4.75937 5.04864 5.05274 5.26337 5.44785 5.48063 5.50343 5.75044 5.89727 6.01403 6.06236 6.10221 6.15252 6.31594 6.34822 6.38058 6.50568 6.60333 6.66264 7.14082 7.48359 7.66601 7.72910 7.93615 8.10367 8.48605 8.73386 8.91972 9.36473 10.84691 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.002547 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.513061 B =10992.160872 C =11574.267145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 C -0.234 4.234 4 C 0.432 3.568 5 N -0.661 5.661 6 C 0.713 3.287 7 O -0.540 6.540 8 N -0.661 5.661 9 C 0.094 3.906 10 C 0.038 3.962 11 C -0.518 4.518 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.123 3.877 20 N -0.486 5.486 21 C 0.208 3.792 22 C -0.245 4.245 23 C 0.540 3.460 24 O -0.519 6.519 25 O -0.513 6.513 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.417 0.583 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.265 0.735 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.172 0.828 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -14.209 -2.269 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.258 4.258 4 C 0.199 3.801 5 N -0.306 5.306 6 C 0.416 3.584 7 O -0.413 6.413 8 N -0.399 5.399 9 C -0.028 4.028 10 C 0.018 3.982 11 C -0.557 4.557 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.001 3.999 20 N -0.201 5.201 21 C 0.046 3.954 22 C -0.251 4.251 23 C 0.386 3.614 24 O -0.410 6.410 25 O -0.325 6.325 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.254 0.746 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.189 0.811 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -11.374 -14.511 -2.158 18.564 hybrid contribution -1.166 0.856 -0.370 1.493 sum -12.540 -13.655 -2.528 18.711 Atomic orbital electron populations 1.21196 0.89004 1.04104 1.04114 1.19807 0.97111 0.90350 0.87945 1.21016 0.92164 0.99677 1.12982 1.18542 0.87515 0.86325 0.87751 1.42899 1.07225 1.07187 1.73312 1.15478 0.80248 0.83681 0.79039 1.90995 1.66699 1.28239 1.55382 1.49254 1.11772 1.04787 1.74110 1.23706 1.02846 0.75640 1.00608 1.20373 0.90165 0.90559 0.97085 1.20865 1.27601 0.90668 1.16518 0.91776 1.25030 0.94750 0.99251 0.94465 1.69936 1.35164 1.24074 1.23108 0.86575 0.80100 0.81657 0.79237 1.20057 1.21222 1.19980 1.23276 0.80020 0.95892 1.00717 1.67996 1.38361 0.96524 1.17239 1.23193 0.89766 0.96097 0.86353 1.19742 0.95156 0.90618 1.19538 1.20530 0.85065 0.84095 0.71721 1.90817 1.15001 1.87731 1.47448 1.84576 1.44945 1.17069 1.85895 0.90022 0.88038 0.91329 0.83744 0.74629 0.90738 0.92489 0.91207 0.92522 0.92223 0.90856 0.81063 0.72832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.93 36.00 0.32 -0.85 16 2 C 0.06 0.62 5.92 -104.31 -0.62 0.00 16 3 C -0.23 -2.68 9.52 -39.67 -0.38 -3.06 16 4 C 0.43 6.43 7.41 -154.92 -1.15 5.28 16 5 N -0.66 -10.28 5.37 -15.83 -0.09 -10.36 16 6 C 0.71 14.00 8.75 -86.91 -0.76 13.24 16 7 O -0.54 -12.31 15.35 5.31 0.08 -12.23 16 8 N -0.66 -12.94 3.69 -190.87 -0.70 -13.65 16 9 C 0.09 1.85 7.88 -8.37 -0.07 1.78 16 10 C 0.04 0.84 3.79 -91.14 -0.35 0.49 16 11 C -0.52 -12.69 8.83 -34.44 -0.30 -13.00 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.33 13.26 55.43 0.74 -22.60 16 15 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.12 2.48 8.17 -8.52 -0.07 2.41 16 20 N -0.49 -8.03 7.85 -12.05 -0.09 -8.12 16 21 C 0.21 2.71 10.79 -17.10 -0.18 2.53 16 22 C -0.24 -2.87 5.89 -104.83 -0.62 -3.49 16 23 C 0.54 5.70 8.25 34.49 0.28 5.98 16 24 O -0.52 -6.24 14.17 -19.27 -0.27 -6.51 16 25 O -0.51 -3.94 12.70 -40.63 -0.52 -4.45 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.04 5.75 -51.93 -0.30 0.74 16 28 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.42 5.26 8.41 -40.82 -0.34 4.91 16 31 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 37 H 0.17 1.87 7.62 -52.49 -0.40 1.47 16 38 H 0.41 1.24 9.11 45.56 0.42 1.65 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -31.85 334.71 -8.36 -40.20 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.54 Total: 5.24 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -3.98 Total: 12.96 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.15 Total: -54.73 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.71 Total: -23.20 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -8.36 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607681214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.671 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds