Wall clock time and date at job start Tue Mar 31 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36952 * 120.75791 * 2 1 4 4 C 1.39258 * 119.38870 * 179.97438 * 3 2 1 5 5 N 1.38908 * 119.52264 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99682 * 185.76187 * 5 4 3 7 7 O 1.21564 * 120.00368 * 355.67230 * 6 5 4 8 8 N 1.34780 * 119.99385 * 175.40110 * 6 5 4 9 9 C 1.47066 * 136.06076 * 359.62799 * 8 6 5 10 10 C 1.53755 * 87.88808 * 152.96580 * 9 8 6 11 11 C 1.50694 * 114.26766 * 139.79081 * 10 9 8 12 12 H 1.08001 * 120.00583 * 266.47350 * 11 10 9 13 13 C 1.37876 * 120.00013 * 86.47827 * 11 10 9 14 14 N 1.31517 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00195 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47074 * 59.99684 * 15 13 11 17 17 H 1.48497 * 109.47304 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47059 * 299.99908 * 15 13 11 19 19 C 1.47068 * 136.05341 * 179.97438 * 8 6 5 20 20 N 1.32574 * 120.94744 * 0.28363 * 4 3 2 21 21 C 1.31632 * 121.66005 * 359.42630 * 20 4 3 22 22 C 1.39665 * 120.49862 * 0.56810 * 21 20 4 23 23 C 1.47458 * 120.48701 * 179.69863 * 22 21 20 24 24 O 1.21507 * 119.99606 * 178.13525 * 23 22 21 25 25 O 1.34750 * 120.00111 * 358.13258 * 23 22 21 26 26 H 1.09004 * 109.47472 * 96.93444 * 1 2 3 27 27 H 1.09004 * 109.46689 * 216.93605 * 1 2 3 28 28 H 1.08996 * 109.47567 * 336.93422 * 1 2 3 29 29 H 1.07989 * 120.30666 * 359.96346 * 3 2 1 30 30 H 0.96995 * 120.00016 * 5.76435 * 5 4 3 31 31 H 1.09004 * 113.46548 * 267.69595 * 9 8 6 32 32 H 1.09002 * 113.46504 * 38.13563 * 9 8 6 33 33 H 1.09004 * 114.39413 * 272.67868 * 10 9 8 34 34 H 0.97003 * 120.00244 * 180.02562 * 14 13 11 35 35 H 1.08999 * 113.46789 * 321.86583 * 19 8 6 36 36 H 1.09001 * 113.46830 * 92.24734 * 19 8 6 37 37 H 1.07995 * 119.74999 * 180.31067 * 21 20 4 38 38 H 0.96697 * 116.99792 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1769 0.0000 4 6 3.5995 1.1436 0.0005 5 7 4.3127 2.3356 0.0011 6 6 5.6553 2.3176 -0.1156 7 8 6.2490 1.2572 -0.1421 8 7 6.3392 3.4753 -0.2084 9 6 6.0010 4.9065 -0.2264 10 6 7.3981 5.1857 0.3517 11 6 8.0813 6.3936 -0.2356 12 1 8.7529 6.2801 -1.0739 13 6 7.8493 7.6439 0.2971 14 7 7.0313 7.7824 1.3176 15 14 8.6967 9.1413 -0.4304 16 1 8.3126 9.2826 -1.8579 17 1 8.2820 10.3562 0.3159 18 1 10.1688 8.9753 -0.3281 19 6 7.7515 3.8631 -0.3422 20 7 4.2539 -0.0094 -0.0046 21 6 3.6206 -1.1633 0.0009 22 6 2.2246 -1.2057 0.0004 23 6 1.5154 -2.4985 -0.0002 24 8 0.3011 -2.5253 0.0337 25 8 2.2139 -3.6502 -0.0383 26 1 -0.3634 -0.1241 -1.0202 27 1 -0.3633 -0.8215 0.6176 28 1 -0.3634 0.9454 0.4026 29 1 1.6849 2.1220 -0.0006 30 1 3.8445 3.1809 0.0855 31 1 5.8589 5.3063 -1.2305 32 1 5.1887 5.1691 0.4513 33 1 7.4511 5.1472 1.4397 34 1 6.8677 8.6621 1.6922 35 1 8.4303 3.2370 0.2368 36 1 8.0715 3.9867 -1.3769 37 1 4.1847 -2.0842 0.0015 38 1 1.7051 -4.4725 -0.0366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607681214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:30 Heat of formation + Delta-G solvation = -48.412211 kcal Electronic energy + Delta-G solvation = -23823.683010 eV Core-core repulsion = 20053.516681 eV Total energy + Delta-G solvation = -3770.166329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26308 -41.35984 -40.44289 -38.96106 -37.19584 -36.10345 -34.83318 -34.60519 -32.07347 -30.48380 -29.05753 -27.13176 -26.67977 -25.48027 -24.10270 -22.97909 -21.84660 -20.72311 -19.38688 -19.10104 -18.66212 -18.27354 -18.12372 -17.14579 -16.93787 -16.68652 -16.37137 -16.35515 -15.65427 -15.49176 -14.86360 -14.75108 -14.37279 -14.07324 -13.97224 -13.87326 -13.61062 -13.33310 -13.24620 -13.17901 -12.74193 -12.61007 -12.52594 -12.17279 -11.95676 -11.70569 -11.37033 -11.08751 -11.03289 -10.69632 -10.53291 -10.22882 -9.75986 -9.33222 -8.15348 -6.25929 -0.56528 0.18334 1.22256 1.42198 1.50593 1.52255 1.58936 2.06177 2.08691 2.46042 2.64247 2.78223 3.15450 3.32848 3.60691 3.70103 3.79264 4.20840 4.27414 4.37230 4.41847 4.52348 4.62774 4.68587 4.72896 4.74389 4.78710 4.89747 4.94503 4.99653 5.19458 5.30955 5.55908 5.61852 5.70571 5.83280 5.86563 6.24762 6.79341 6.82834 6.98956 7.03720 7.42633 7.47976 8.94269 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.002547 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.513061 B =10992.160872 C =11574.267145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.215 4.215 4 C 0.403 3.597 5 N -0.653 5.653 6 C 0.713 3.287 7 O -0.578 6.578 8 N -0.661 5.661 9 C 0.112 3.888 10 C 0.025 3.975 11 C -0.527 4.527 12 H 0.067 0.933 13 C 0.023 3.977 14 N -0.918 5.918 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.129 3.871 20 N -0.530 5.530 21 C 0.198 3.802 22 C -0.240 4.240 23 C 0.546 3.454 24 O -0.533 6.533 25 O -0.507 6.507 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.430 0.570 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.184 0.816 38 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -14.379 -3.095 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.043 3.957 3 C -0.238 4.238 4 C 0.172 3.828 5 N -0.300 5.300 6 C 0.416 3.584 7 O -0.453 6.453 8 N -0.400 5.400 9 C -0.010 4.010 10 C 0.005 3.995 11 C -0.565 4.565 12 H 0.085 0.915 13 C -0.178 4.178 14 N -0.556 5.556 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.198 1.198 19 C 0.006 3.994 20 N -0.246 5.246 21 C 0.037 3.963 22 C -0.246 4.246 23 C 0.392 3.608 24 O -0.425 6.425 25 O -0.321 6.321 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.195 0.805 30 H 0.269 0.731 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.201 0.799 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -13.036 -14.725 -2.992 19.893 hybrid contribution -0.718 0.726 -0.090 1.025 sum -13.754 -13.999 -3.082 19.866 Atomic orbital electron populations 1.21200 0.87160 1.05022 1.04444 1.20158 0.98322 0.89994 0.87189 1.21259 0.90562 1.01246 1.10763 1.18796 0.88659 0.85656 0.89729 1.42603 1.05678 1.08347 1.73366 1.15600 0.81428 0.82843 0.78548 1.90963 1.67998 1.29301 1.57067 1.49148 1.11470 1.04914 1.74429 1.23445 1.01234 0.75488 1.00852 1.20244 0.92474 0.91205 0.95529 1.21172 1.27494 0.91439 1.16441 0.91471 1.25724 0.95404 1.01786 0.94843 1.70040 1.36629 1.24496 1.24390 0.85630 0.78990 0.78425 0.78726 1.19227 1.21406 1.19847 1.23156 0.80669 0.94621 1.00956 1.67835 1.40386 0.97885 1.18474 1.23351 0.90543 0.95634 0.86755 1.19963 0.94808 0.91878 1.17930 1.20277 0.84666 0.84426 0.71424 1.90824 1.15485 1.88073 1.48126 1.84532 1.45000 1.17449 1.85116 0.89346 0.88970 0.89039 0.80516 0.73067 0.89919 0.91719 0.94154 0.92654 0.92524 0.89741 0.79912 0.70283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.93 71.23 0.64 -1.24 16 2 C 0.05 1.03 5.92 -19.66 -0.12 0.91 16 3 C -0.21 -4.43 9.52 22.21 0.21 -4.22 16 4 C 0.40 11.68 7.41 133.07 0.99 12.67 16 5 N -0.65 -19.84 5.37 -322.28 -1.73 -21.58 16 6 C 0.71 28.05 8.75 179.05 1.57 29.62 16 7 O -0.58 -26.78 15.35 -3.92 -0.06 -26.84 16 8 N -0.66 -25.82 3.69 -876.05 -3.23 -29.05 16 9 C 0.11 4.33 7.88 83.27 0.66 4.99 16 10 C 0.02 1.13 3.79 -11.13 -0.04 1.09 16 11 C -0.53 -25.75 8.83 25.60 0.23 -25.53 16 12 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 13 C 0.02 1.14 5.46 84.65 0.46 1.61 16 14 N -0.92 -48.57 13.26 21.45 0.28 -48.29 16 15 Si 0.96 39.64 29.54 68.60 2.03 41.67 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 19 C 0.13 5.20 8.17 83.17 0.68 5.88 16 20 N -0.53 -17.53 7.85 -192.05 -1.51 -19.03 16 21 C 0.20 5.07 10.79 85.07 0.92 5.98 16 22 C -0.24 -5.29 5.89 -20.00 -0.12 -5.41 16 23 C 0.55 10.50 8.25 70.25 0.58 11.08 16 24 O -0.53 -11.72 14.17 19.81 0.28 -11.44 16 25 O -0.51 -6.72 12.70 -56.61 -0.72 -7.44 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.66 5.75 -2.38 -0.01 1.65 16 28 H 0.09 0.99 8.05 -2.39 -0.02 0.97 16 29 H 0.18 2.38 8.06 -2.92 -0.02 2.36 16 30 H 0.43 10.26 8.41 -92.71 -0.78 9.48 16 31 H 0.08 3.08 8.10 -2.38 -0.02 3.06 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 34 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 37 H 0.18 3.95 7.62 -2.91 -0.02 3.93 16 38 H 0.43 1.52 9.11 -74.06 -0.67 0.85 16 Total: -1.00 -68.70 334.71 1.67 -67.04 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.32 Total: 17.54 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: 6.65 Total: 37.42 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -6.18 Total: -117.95 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.50 Total: -45.71 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -68.70 1.67 -67.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607681214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.623 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds