Wall clock time and date at job start Tue Mar 31 2020 08:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47152 * 2 1 4 4 N 1.46505 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.34781 * 126.58672 * 125.00095 * 4 3 2 6 6 C 1.36667 * 106.83318 * 179.97438 * 5 4 3 7 7 C 1.47394 * 125.77919 * 179.97438 * 6 5 4 8 8 O 1.21516 * 119.99903 * 0.02562 * 7 6 5 9 9 O 1.34747 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99520 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47454 * 329.99747 * 10 9 7 12 12 C 1.50703 * 109.46650 * 210.00166 * 10 9 7 13 13 H 1.07996 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99653 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99792 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99892 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47245 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47172 * 119.99819 * 16 14 12 19 19 H 1.48495 * 109.46753 * 239.99688 * 16 14 12 20 20 C 1.50699 * 109.46676 * 90.00556 * 10 9 7 21 21 C 1.34518 * 125.78289 * 219.99509 * 20 10 9 22 22 C 1.41380 * 106.83950 * 180.02562 * 21 20 10 23 23 C 1.34522 * 106.83875 * 359.97438 * 22 21 20 24 24 O 1.34297 * 108.42143 * 359.73870 * 23 22 21 25 25 N 1.34434 * 108.44239 * 359.97438 * 6 5 4 26 26 N 1.28760 * 109.51071 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47348 * 299.99904 * 1 2 3 29 29 H 1.09003 * 109.47192 * 60.00020 * 1 2 3 30 30 H 1.08999 * 109.47361 * 239.99391 * 2 1 3 31 31 H 1.09003 * 109.47192 * 119.99980 * 2 1 3 32 32 H 1.09000 * 109.47338 * 59.99998 * 3 2 1 33 33 H 1.08994 * 109.47107 * 299.99897 * 3 2 1 34 34 H 1.07992 * 126.58113 * 359.97329 * 5 4 3 35 35 H 0.97007 * 119.99846 * 180.02562 * 15 14 12 36 36 H 1.07998 * 126.58161 * 0.03789 * 21 20 10 37 37 H 1.07991 * 126.58517 * 179.97438 * 22 21 20 38 38 H 1.08004 * 125.78584 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3080 2.0633 -0.8874 6 6 5.5944 1.7987 -0.5092 7 6 6.8093 2.2770 -1.1932 8 8 6.7142 2.9717 -2.1856 9 8 8.0254 1.9447 -0.7173 10 6 9.1775 2.4507 -1.4419 11 1 8.9242 2.5603 -2.4963 12 6 10.3249 1.4842 -1.2987 13 1 10.2008 0.5805 -0.7207 14 6 11.5335 1.7544 -1.9049 15 7 11.6847 2.8553 -2.6084 16 14 12.9556 0.5561 -1.7281 17 1 12.5309 -0.5964 -0.8936 18 1 13.3644 0.0715 -3.0709 19 1 14.1021 1.2411 -1.0789 20 6 9.5761 3.7906 -0.8789 21 6 9.9826 4.8548 -1.5942 22 6 10.2534 5.8901 -0.6702 23 6 9.9955 5.3967 0.5544 24 8 9.5798 4.1267 0.4213 25 7 5.5641 1.0284 0.5921 26 7 4.3410 0.7982 0.9223 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8899 34 1 3.9949 2.6560 -1.7341 35 1 12.5349 3.0452 -3.0352 36 1 10.0828 4.9083 -2.6682 37 1 10.6005 6.8859 -0.9028 38 1 10.1002 5.9328 1.4861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649266558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:06 Heat of formation + Delta-G solvation = 25.701218 kcal Electronic energy + Delta-G solvation = -24319.392818 eV Core-core repulsion = 20552.440289 eV Total energy + Delta-G solvation = -3766.952529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.15342 -41.29911 -39.24046 -36.24176 -35.72151 -33.25049 -32.80772 -31.66510 -30.95264 -29.54706 -27.39869 -26.59316 -24.21362 -23.09345 -22.52062 -21.66718 -20.65377 -20.22120 -19.29607 -17.97224 -16.89507 -16.61851 -16.29737 -16.19957 -15.46386 -15.26334 -14.83657 -14.78387 -14.67813 -14.39417 -13.88706 -13.30709 -12.94488 -12.82616 -12.49765 -12.23204 -12.00778 -11.87996 -11.71381 -11.53187 -11.38511 -11.23986 -11.12008 -11.04636 -10.92957 -10.38011 -10.33271 -10.11048 -9.93231 -9.35480 -9.24691 -8.78078 -8.60798 -7.21958 -6.17477 -4.34154 1.11499 1.83658 1.93305 2.90204 3.24796 3.30401 3.34640 3.45549 3.50032 3.95721 4.05557 4.24053 4.26902 4.31675 4.36279 4.61918 4.79677 4.84580 4.91921 5.10087 5.12571 5.21821 5.33516 5.51952 5.60860 5.74313 5.83735 5.96232 6.10635 6.28875 6.39969 6.70063 7.01598 7.15662 7.26786 7.36317 7.72989 7.73850 7.86657 8.00719 8.37992 8.53558 8.82441 9.32235 10.81648 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.003532 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.989597 B = 7925.215285 C = 8752.149514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.122 3.878 4 N -0.366 5.366 5 C 0.093 3.907 6 C -0.073 4.073 7 C 0.545 3.455 8 O -0.513 6.513 9 O -0.326 6.326 10 C 0.297 3.703 11 H 0.081 0.919 12 C -0.528 4.528 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.869 5.869 16 Si 0.914 3.086 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.026 3.974 21 C -0.178 4.178 22 C -0.219 4.219 23 C -0.087 4.087 24 O -0.175 6.175 25 N -0.175 5.175 26 N -0.070 5.070 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.207 0.793 35 H 0.268 0.732 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.111 0.075 2.729 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.064 4.064 6 C -0.210 4.210 7 C 0.387 3.613 8 O -0.401 6.401 9 O -0.241 6.241 10 C 0.244 3.756 11 H 0.098 0.902 12 C -0.565 4.565 13 H 0.098 0.902 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.740 3.260 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.025 4.025 21 C -0.197 4.197 22 C -0.239 4.239 23 C -0.155 4.155 24 O -0.071 6.071 25 N -0.050 5.050 26 N -0.050 5.050 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.223 0.777 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -19.010 -0.672 3.793 19.396 hybrid contribution 0.988 0.612 -1.017 1.545 sum -18.022 -0.060 2.776 18.234 Atomic orbital electron populations 1.21703 0.93945 1.02807 1.02273 1.21840 0.96823 0.94675 1.04400 1.22126 0.72658 1.00025 1.05076 1.50570 1.08743 1.35518 1.20211 1.23316 0.89926 0.97112 0.96016 1.20596 0.92588 1.08561 0.99259 1.19460 0.83775 0.76914 0.81174 1.90823 1.87744 1.36360 1.25211 1.86718 1.13859 1.68183 1.55292 1.19283 0.79783 0.85291 0.91245 0.90163 1.20954 0.94886 1.06003 1.34659 0.90169 1.24939 0.98562 0.95792 0.94360 1.70045 1.25679 1.23535 1.31087 0.86170 0.81059 0.80655 0.78067 1.19181 1.20592 1.20705 1.23523 1.02707 0.96902 0.79401 1.21199 1.06599 0.91580 1.00355 1.21683 1.08398 1.00448 0.93325 1.23613 1.08108 0.84506 0.99277 1.84013 1.66727 1.27573 1.28794 1.74845 1.11830 1.08765 1.09514 1.82010 0.93489 1.17609 1.11923 0.91683 0.92128 0.92254 0.90928 0.89933 0.88377 0.87759 0.77665 0.92257 0.84073 0.85155 0.79929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.84 6.14 -26.73 -0.16 -1.01 16 3 C 0.12 0.76 6.54 -4.04 -0.03 0.73 16 4 N -0.37 -4.18 3.69 -61.05 -0.23 -4.41 16 5 C 0.09 1.18 11.27 -16.82 -0.19 0.99 16 6 C -0.07 -1.31 7.02 -83.57 -0.59 -1.90 16 7 C 0.55 11.99 7.93 34.46 0.27 12.26 16 8 O -0.51 -11.68 16.12 -19.28 -0.31 -11.99 16 9 O -0.33 -8.26 9.86 -42.72 -0.42 -8.68 16 10 C 0.30 8.06 2.42 -29.03 -0.07 7.99 16 11 H 0.08 2.27 7.15 -51.93 -0.37 1.90 16 12 C -0.53 -14.95 8.89 -34.44 -0.31 -15.25 16 13 H 0.08 2.27 7.81 -52.49 -0.41 1.86 16 14 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 15 N -0.87 -24.19 10.95 55.43 0.61 -23.59 16 16 Si 0.91 21.33 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.03 0.69 5.54 -35.62 -0.20 0.49 16 21 C -0.18 -4.47 9.17 -39.70 -0.36 -4.83 16 22 C -0.22 -4.76 10.91 -39.70 -0.43 -5.20 16 23 C -0.09 -1.86 12.09 29.42 0.36 -1.50 16 24 O -0.17 -4.45 10.65 4.36 0.05 -4.41 16 25 N -0.18 -3.30 12.39 32.83 0.41 -2.89 16 26 N -0.07 -1.08 13.65 60.35 0.82 -0.26 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.21 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.14 3.59 7.87 -52.49 -0.41 3.18 16 37 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.18 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -34.13 343.54 -4.91 -39.04 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.55 Total: 1.34 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.44 Total: -5.65 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 1.61 Total: -31.14 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.69 Total: -25.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.13 -4.91 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649266558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.740 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds