Wall clock time and date at job start Tue Mar 31 2020 08:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47152 * 2 1 4 4 N 1.46505 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.34781 * 126.58672 * 125.00095 * 4 3 2 6 6 C 1.36667 * 106.83318 * 179.97438 * 5 4 3 7 7 C 1.47394 * 125.77919 * 179.97438 * 6 5 4 8 8 O 1.21516 * 119.99903 * 0.02562 * 7 6 5 9 9 O 1.34747 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.45206 * 116.99520 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47454 * 329.99747 * 10 9 7 12 12 C 1.50703 * 109.46650 * 210.00166 * 10 9 7 13 13 H 1.07996 * 119.99912 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99653 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99792 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99892 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47245 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47172 * 119.99819 * 16 14 12 19 19 H 1.48495 * 109.46753 * 239.99688 * 16 14 12 20 20 C 1.50699 * 109.46676 * 90.00556 * 10 9 7 21 21 C 1.34518 * 125.78289 * 219.99509 * 20 10 9 22 22 C 1.41380 * 106.83950 * 180.02562 * 21 20 10 23 23 C 1.34522 * 106.83875 * 359.97438 * 22 21 20 24 24 O 1.34297 * 108.42143 * 359.73870 * 23 22 21 25 25 N 1.34434 * 108.44239 * 359.97438 * 6 5 4 26 26 N 1.28760 * 109.51071 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47348 * 299.99904 * 1 2 3 29 29 H 1.09003 * 109.47192 * 60.00020 * 1 2 3 30 30 H 1.08999 * 109.47361 * 239.99391 * 2 1 3 31 31 H 1.09003 * 109.47192 * 119.99980 * 2 1 3 32 32 H 1.09000 * 109.47338 * 59.99998 * 3 2 1 33 33 H 1.08994 * 109.47107 * 299.99897 * 3 2 1 34 34 H 1.07992 * 126.58113 * 359.97329 * 5 4 3 35 35 H 0.97007 * 119.99846 * 180.02562 * 15 14 12 36 36 H 1.07998 * 126.58161 * 0.03789 * 21 20 10 37 37 H 1.07991 * 126.58517 * 179.97438 * 22 21 20 38 38 H 1.08004 * 125.78584 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3080 2.0633 -0.8874 6 6 5.5944 1.7987 -0.5092 7 6 6.8093 2.2770 -1.1932 8 8 6.7142 2.9717 -2.1856 9 8 8.0254 1.9447 -0.7173 10 6 9.1775 2.4507 -1.4419 11 1 8.9242 2.5603 -2.4963 12 6 10.3249 1.4842 -1.2987 13 1 10.2008 0.5805 -0.7207 14 6 11.5335 1.7544 -1.9049 15 7 11.6847 2.8553 -2.6084 16 14 12.9556 0.5561 -1.7281 17 1 12.5309 -0.5964 -0.8936 18 1 13.3644 0.0715 -3.0709 19 1 14.1021 1.2411 -1.0789 20 6 9.5761 3.7906 -0.8789 21 6 9.9826 4.8548 -1.5942 22 6 10.2534 5.8901 -0.6702 23 6 9.9955 5.3967 0.5544 24 8 9.5798 4.1267 0.4213 25 7 5.5641 1.0284 0.5921 26 7 4.3410 0.7982 0.9223 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9562 -0.8899 34 1 3.9949 2.6560 -1.7341 35 1 12.5349 3.0452 -3.0352 36 1 10.0828 4.9083 -2.6682 37 1 10.6005 6.8859 -0.9028 38 1 10.1002 5.9328 1.4861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649266558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:06 Heat of formation + Delta-G solvation = 3.335601 kcal Electronic energy + Delta-G solvation = -24320.362664 eV Core-core repulsion = 20552.440289 eV Total energy + Delta-G solvation = -3767.922375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.34189 -43.15797 -41.00321 -37.57793 -36.96088 -35.28574 -33.64704 -33.53659 -32.29312 -31.37970 -28.64279 -28.00691 -25.85148 -24.46179 -23.71934 -22.59719 -22.37363 -21.76194 -21.04943 -19.42190 -18.68271 -18.46708 -17.69785 -17.33889 -17.08124 -16.66235 -16.47631 -16.31909 -15.87542 -15.82169 -14.94412 -14.71529 -14.46038 -13.90245 -13.72764 -13.51134 -13.45169 -13.28458 -13.12445 -13.03157 -12.95666 -12.82531 -12.50303 -12.23796 -12.21649 -12.04201 -11.74531 -11.71025 -11.35263 -11.32152 -10.80339 -10.50435 -10.47141 -9.11233 -8.24025 -6.51662 0.00889 0.40826 0.98767 1.12904 1.39560 1.40951 1.53978 1.80383 1.93325 2.10986 2.38372 2.44926 3.00672 3.14263 3.37488 3.76809 3.82008 3.84250 4.13431 4.16803 4.24526 4.41900 4.43393 4.48398 4.57845 4.63149 4.71276 4.82903 5.13963 5.15997 5.19342 5.30420 5.31994 5.40086 5.45699 5.48015 5.65201 5.79721 5.94416 6.48366 6.51825 6.74599 6.94598 7.19336 8.73432 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.003532 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.989597 B = 7925.215285 C = 8752.149514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.109 3.891 4 N -0.344 5.344 5 C 0.129 3.871 6 C -0.112 4.112 7 C 0.541 3.459 8 O -0.530 6.530 9 O -0.347 6.347 10 C 0.301 3.699 11 H 0.052 0.948 12 C -0.558 4.558 13 H 0.068 0.932 14 C 0.028 3.972 15 N -0.887 5.887 16 Si 0.980 3.020 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.275 1.275 20 C -0.006 4.006 21 C -0.187 4.187 22 C -0.225 4.225 23 C -0.073 4.073 24 O -0.198 6.198 25 N -0.217 5.217 26 N -0.080 5.080 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.250 0.750 35 H 0.272 0.728 36 H 0.127 0.873 37 H 0.169 0.831 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.592 1.199 3.201 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.009 4.009 4 N -0.128 5.128 5 C -0.030 4.030 6 C -0.250 4.250 7 C 0.385 3.615 8 O -0.420 6.420 9 O -0.262 6.262 10 C 0.247 3.753 11 H 0.070 0.930 12 C -0.595 4.595 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.522 5.522 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.201 1.201 20 C -0.057 4.057 21 C -0.207 4.207 22 C -0.244 4.244 23 C -0.140 4.140 24 O -0.096 6.096 25 N -0.091 5.091 26 N -0.061 5.061 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.164 0.836 34 H 0.266 0.734 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.186 0.814 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -20.544 0.445 4.273 20.988 hybrid contribution 1.237 0.323 -1.147 1.717 sum -19.306 0.768 3.127 19.573 Atomic orbital electron populations 1.21671 0.91947 1.03111 1.03423 1.21810 0.98405 0.94278 1.03028 1.22778 0.69177 1.00787 1.08158 1.50964 1.10355 1.33208 1.18316 1.23832 0.87887 0.95284 0.95950 1.20399 0.92660 1.11302 1.00597 1.20044 0.83799 0.76479 0.81189 1.90781 1.87873 1.37313 1.26030 1.86691 1.14934 1.68883 1.55673 1.18885 0.80253 0.86028 0.90121 0.93022 1.21148 0.96289 1.06367 1.35675 0.91404 1.25772 1.00661 0.97503 0.93654 1.70149 1.26350 1.24637 1.31079 0.85182 0.77590 0.78407 0.78553 1.19126 1.19174 1.20077 1.23317 1.04953 0.97140 0.80245 1.21295 1.06479 0.92699 1.00213 1.22052 1.08429 1.01342 0.92564 1.24683 1.05117 0.82807 1.01349 1.83983 1.67564 1.29781 1.28231 1.74818 1.13642 1.10072 1.10563 1.81893 0.93048 1.18158 1.12963 0.91899 0.91296 0.90749 0.91827 0.91927 0.86367 0.83610 0.73412 0.91889 0.85457 0.81395 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.91 71.98 0.71 -0.03 16 2 C -0.14 -1.37 6.14 30.59 0.19 -1.18 16 3 C 0.11 0.97 6.54 86.38 0.56 1.54 16 4 N -0.34 -7.15 3.69 -347.08 -1.28 -8.43 16 5 C 0.13 3.05 11.27 83.87 0.95 3.99 16 6 C -0.11 -4.12 7.02 40.79 0.29 -3.83 16 7 C 0.54 25.00 7.93 70.23 0.56 25.56 16 8 O -0.53 -25.20 16.12 19.79 0.32 -24.88 16 9 O -0.35 -18.72 9.86 -54.57 -0.54 -19.25 16 10 C 0.30 17.32 2.42 29.10 0.07 17.39 16 11 H 0.05 3.17 7.15 -2.39 -0.02 3.16 16 12 C -0.56 -33.17 8.89 25.60 0.23 -32.95 16 13 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 14 C 0.03 1.55 5.30 84.66 0.45 2.00 16 15 N -0.89 -50.65 10.95 21.45 0.23 -50.41 16 16 Si 0.98 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.01 -0.33 5.54 24.83 0.14 -0.20 16 21 C -0.19 -9.60 9.17 22.19 0.20 -9.39 16 22 C -0.22 -9.43 10.91 22.19 0.24 -9.18 16 23 C -0.07 -2.96 12.09 66.97 0.81 -2.15 16 24 O -0.20 -10.21 10.65 -1.09 -0.01 -10.23 16 25 N -0.22 -8.40 12.39 -50.03 -0.62 -9.02 16 26 N -0.08 -2.45 13.65 37.02 0.51 -1.95 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.15 0.22 8.08 -2.39 -0.02 0.20 16 34 H 0.25 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 36 H 0.13 6.75 7.87 -2.91 -0.02 6.73 16 37 H 0.17 5.61 8.06 -2.92 -0.02 5.59 16 38 H 0.24 6.65 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -80.09 343.54 7.11 -72.98 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.08 Total: 13.23 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.39 Total: -8.44 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -1.16 Total: -69.81 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.23 Total: -54.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -80.09 7.11 -72.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649266558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.313 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds