Wall clock time and date at job start Tue Mar 31 2020 08:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48507 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47065 * 299.99254 * 3 2 1 6 6 H 1.48495 * 109.47525 * 60.00069 * 3 2 1 7 7 C 1.38816 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83389 * 359.97438 * 9 7 2 11 11 H 1.08994 * 115.86077 * 0.37450 * 10 9 7 12 12 C 1.55847 * 101.05071 * 233.98372 * 10 9 7 13 13 C 1.54854 * 103.44484 * 327.06597 * 12 10 9 14 14 C 1.50234 * 130.83848 * 180.02562 * 9 7 2 15 15 H 1.08993 * 115.86241 * 359.63054 * 14 9 7 16 16 C 1.55845 * 101.05065 * 233.94940 * 14 9 7 17 17 H 1.08998 * 110.76242 * 208.50686 * 16 14 9 18 18 N 1.46501 * 110.62411 * 85.55427 * 16 14 9 19 19 C 1.34776 * 119.99944 * 159.52304 * 18 16 14 20 20 O 1.21535 * 120.00062 * 359.97438 * 19 18 16 21 21 C 1.48001 * 119.99951 * 180.02562 * 19 18 16 22 22 N 1.32801 * 119.75064 * 359.97438 * 21 19 18 23 23 C 1.31434 * 121.66492 * 180.02562 * 22 21 19 24 24 C 1.38675 * 120.97990 * 359.97438 * 23 22 21 25 25 C 1.38446 * 119.39662 * 0.02562 * 24 23 22 26 26 C 1.38965 * 118.46814 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.50434 * 180.02562 * 26 25 24 28 28 C 1.54854 * 103.44662 * 327.06488 * 16 14 9 29 29 H 0.96999 * 120.00467 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.62591 * 85.54938 * 12 10 9 31 31 H 1.08993 * 110.62982 * 208.57619 * 12 10 9 32 32 H 1.08997 * 110.62722 * 241.50867 * 13 12 10 33 33 H 1.09003 * 110.76659 * 118.55105 * 13 12 10 34 34 H 0.96997 * 119.99812 * 339.51994 * 18 16 14 35 35 H 1.08010 * 119.50874 * 179.72588 * 23 22 21 36 36 H 1.08006 * 120.30233 * 179.97438 * 24 23 22 37 37 H 1.08004 * 120.76344 * 179.97438 * 25 24 23 38 38 H 1.09003 * 110.62573 * 118.48822 * 28 16 14 39 39 H 1.08993 * 110.62873 * 241.34973 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2735 -3.6106 1.2373 13 6 1.0675 -4.3849 1.2363 14 6 1.8186 -3.8072 -0.0005 15 1 2.9011 -3.9344 -0.0069 16 6 1.0664 -4.3849 -1.2372 17 1 0.8924 -5.4543 -1.1187 18 7 1.8157 -4.1188 -2.4676 19 6 1.5847 -4.8581 -3.5705 20 8 0.7551 -5.7458 -3.5443 21 6 2.3421 -4.5896 -4.8134 22 7 3.2479 -3.6187 -4.8364 23 6 3.9414 -3.3477 -5.9195 24 6 3.7527 -4.0709 -7.0876 25 6 2.8188 -5.0927 -7.1108 26 6 2.0990 -5.3587 -5.9522 27 9 1.1780 -6.3468 -5.9288 28 6 -0.2747 -3.6106 -1.2369 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3801 -3.0287 2.1528 31 1 -1.1125 -4.2958 1.1168 32 1 0.8935 -5.4541 1.1151 33 1 1.6274 -4.1894 2.1509 34 1 2.4781 -3.4105 -2.4884 35 1 4.6663 -2.5472 -5.9006 36 1 4.3283 -3.8386 -7.9714 37 1 2.6536 -5.6698 -8.0087 38 1 -0.3822 -3.0286 -2.1523 39 1 -1.1138 -4.2960 -1.1183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098100708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:24 Heat of formation + Delta-G solvation = 7.230371 kcal Electronic energy + Delta-G solvation = -25215.803341 eV Core-core repulsion = 21460.422645 eV Total energy + Delta-G solvation = -3755.380696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.99189 -40.49961 -39.44946 -38.09513 -33.87107 -32.82128 -32.41305 -31.21775 -29.09175 -28.80770 -27.75189 -24.97213 -24.15194 -23.62490 -21.66844 -20.11770 -19.79289 -18.73744 -17.92556 -17.67830 -17.18594 -16.97093 -16.02365 -15.60126 -15.53602 -14.80765 -14.45910 -14.31865 -13.99028 -13.88689 -13.47128 -13.35993 -13.27567 -12.87852 -12.54899 -12.02250 -11.82432 -11.24099 -11.08214 -10.91167 -10.89320 -10.51174 -10.35493 -10.22862 -10.21238 -10.05530 -9.89242 -9.68241 -9.23387 -9.20111 -9.13334 -8.94565 -8.41930 -6.92637 -5.72067 -3.10900 0.36218 0.78881 2.80506 3.30316 3.38050 3.43181 3.45854 3.70336 3.88460 4.06383 4.38938 4.42995 4.56043 4.67607 5.10895 5.14774 5.36971 5.42657 5.51938 5.61477 5.67534 5.71922 5.89916 6.07289 6.11311 6.16931 6.28589 6.33458 6.44866 6.51527 6.64042 6.76026 6.85671 6.97455 7.11469 7.34136 7.44853 7.50871 7.81643 8.01305 8.19475 8.55462 9.09780 9.73044 10.53666 11.37235 Molecular weight = 305.13amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004862 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.478180 B = 5757.948179 C = 7121.680130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.126 3.874 15 H 0.089 0.911 16 C 0.126 3.874 17 H 0.080 0.920 18 N -0.679 5.679 19 C 0.559 3.441 20 O -0.534 6.534 21 C 0.055 3.945 22 N -0.426 5.426 23 C 0.088 3.912 24 C -0.126 4.126 25 C -0.121 4.121 26 C 0.106 3.894 27 F -0.106 7.106 28 C -0.143 4.143 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -8.799 -11.516 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.167 4.167 14 C 0.018 3.982 15 H 0.107 0.893 16 C 0.020 3.980 17 H 0.098 0.902 18 N -0.328 5.328 19 C 0.343 3.657 20 O -0.411 6.411 21 C -0.084 4.084 22 N -0.136 5.136 23 C -0.072 4.072 24 C -0.146 4.146 25 C -0.148 4.148 26 C 0.083 3.917 27 F -0.084 7.084 28 C -0.183 4.183 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.250 0.750 35 H 0.188 0.812 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.077 0.923 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.214 -8.640 -10.659 15.063 hybrid contribution 0.527 0.539 -0.955 1.216 sum 6.741 -8.101 -11.614 15.683 Atomic orbital electron populations 1.69467 1.05016 1.24822 1.57505 1.24692 0.95578 0.97471 1.02869 0.85991 0.78613 0.83658 0.77168 1.20563 1.21894 1.21872 1.19058 0.90258 0.81859 1.42757 0.90292 1.46547 1.01646 0.98597 1.84276 1.23779 0.87420 0.95297 0.88806 0.82958 1.23048 0.95229 0.98241 1.01219 1.22859 0.97705 0.97647 0.98474 1.23147 0.96080 0.86982 0.92019 0.89315 1.22758 0.93085 0.98613 0.83553 0.90239 1.45865 1.41097 1.35436 1.10387 1.17666 0.82619 0.82693 0.82754 1.90814 1.34266 1.32364 1.83695 1.21649 0.97545 0.94560 0.94680 1.67725 1.03551 1.12974 1.29390 1.22964 0.97614 0.98906 0.87756 1.22293 0.97320 0.94747 1.00219 1.21696 0.96267 0.99207 0.97612 1.18688 0.89983 0.88395 0.94682 1.91620 1.62467 1.57592 1.96736 1.23480 0.94807 0.98379 1.01630 0.93633 0.92581 0.93274 0.92963 0.92368 0.75031 0.81210 0.83294 0.82973 0.92262 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.46 55.49 0.58 -25.44 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.21 -5.58 10.59 -15.06 -0.16 -5.74 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.17 2.99 -145.81 -0.44 -14.60 16 10 C 0.15 3.55 4.72 -62.77 -0.30 3.26 16 11 H 0.15 4.04 5.52 -51.93 -0.29 3.75 16 12 C -0.14 -2.76 6.44 -24.23 -0.16 -2.91 16 13 C -0.13 -2.33 6.44 -24.26 -0.16 -2.48 16 14 C 0.13 2.51 5.04 -62.83 -0.32 2.20 16 15 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.13 2.46 2.73 -65.43 -0.18 2.28 16 17 H 0.08 1.53 7.36 -51.93 -0.38 1.14 16 18 N -0.68 -12.83 5.09 -52.29 -0.27 -13.10 16 19 C 0.56 10.53 7.80 -12.26 -0.10 10.44 16 20 O -0.53 -11.31 15.03 5.33 0.08 -11.23 16 21 C 0.06 0.87 6.75 -82.95 -0.56 0.31 16 22 N -0.43 -6.06 9.54 -9.76 -0.09 -6.15 16 23 C 0.09 0.88 11.18 -17.56 -0.20 0.68 16 24 C -0.13 -0.97 10.11 -39.34 -0.40 -1.37 16 25 C -0.12 -1.14 10.16 -39.24 -0.40 -1.54 16 26 C 0.11 1.46 7.32 -38.82 -0.28 1.17 16 27 F -0.11 -1.66 15.55 2.25 0.04 -1.63 16 28 C -0.14 -3.02 6.22 -24.21 -0.15 -3.17 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 32 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.41 7.84 7.95 -40.82 -0.32 7.51 16 35 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 39 H 0.05 1.09 7.82 -51.93 -0.41 0.68 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -31.49 327.54 -8.34 -39.82 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.71 Total: 8.10 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.44 Total: 2.74 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.21 Total: -59.29 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.49 -8.34 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098100708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.052 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds