Wall clock time and date at job start Tue Mar 31 2020 08:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48507 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47065 * 299.99254 * 3 2 1 6 6 H 1.48495 * 109.47525 * 60.00069 * 3 2 1 7 7 C 1.38816 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83389 * 359.97438 * 9 7 2 11 11 H 1.08994 * 115.86077 * 0.37450 * 10 9 7 12 12 C 1.55847 * 101.05071 * 233.98372 * 10 9 7 13 13 C 1.54854 * 103.44484 * 327.06597 * 12 10 9 14 14 C 1.50234 * 130.83848 * 180.02562 * 9 7 2 15 15 H 1.08993 * 115.86241 * 359.63054 * 14 9 7 16 16 C 1.55845 * 101.05065 * 233.94940 * 14 9 7 17 17 H 1.08998 * 110.76242 * 208.50686 * 16 14 9 18 18 N 1.46501 * 110.62411 * 85.55427 * 16 14 9 19 19 C 1.34776 * 119.99944 * 159.52304 * 18 16 14 20 20 O 1.21535 * 120.00062 * 359.97438 * 19 18 16 21 21 C 1.48001 * 119.99951 * 180.02562 * 19 18 16 22 22 N 1.32801 * 119.75064 * 359.97438 * 21 19 18 23 23 C 1.31434 * 121.66492 * 180.02562 * 22 21 19 24 24 C 1.38675 * 120.97990 * 359.97438 * 23 22 21 25 25 C 1.38446 * 119.39662 * 0.02562 * 24 23 22 26 26 C 1.38965 * 118.46814 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.50434 * 180.02562 * 26 25 24 28 28 C 1.54854 * 103.44662 * 327.06488 * 16 14 9 29 29 H 0.96999 * 120.00467 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.62591 * 85.54938 * 12 10 9 31 31 H 1.08993 * 110.62982 * 208.57619 * 12 10 9 32 32 H 1.08997 * 110.62722 * 241.50867 * 13 12 10 33 33 H 1.09003 * 110.76659 * 118.55105 * 13 12 10 34 34 H 0.96997 * 119.99812 * 339.51994 * 18 16 14 35 35 H 1.08010 * 119.50874 * 179.72588 * 23 22 21 36 36 H 1.08006 * 120.30233 * 179.97438 * 24 23 22 37 37 H 1.08004 * 120.76344 * 179.97438 * 25 24 23 38 38 H 1.09003 * 110.62573 * 118.48822 * 28 16 14 39 39 H 1.08993 * 110.62873 * 241.34973 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 0.0005 11 1 -0.8014 -1.7966 -0.0050 12 6 -0.2735 -3.6106 1.2373 13 6 1.0675 -4.3849 1.2363 14 6 1.8186 -3.8072 -0.0005 15 1 2.9011 -3.9344 -0.0069 16 6 1.0664 -4.3849 -1.2372 17 1 0.8924 -5.4543 -1.1187 18 7 1.8157 -4.1188 -2.4676 19 6 1.5847 -4.8581 -3.5705 20 8 0.7551 -5.7458 -3.5443 21 6 2.3421 -4.5896 -4.8134 22 7 3.2479 -3.6187 -4.8364 23 6 3.9414 -3.3477 -5.9195 24 6 3.7527 -4.0709 -7.0876 25 6 2.8188 -5.0927 -7.1108 26 6 2.0990 -5.3587 -5.9522 27 9 1.1780 -6.3468 -5.9288 28 6 -0.2747 -3.6106 -1.2369 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3801 -3.0287 2.1528 31 1 -1.1125 -4.2958 1.1168 32 1 0.8935 -5.4541 1.1151 33 1 1.6274 -4.1894 2.1509 34 1 2.4781 -3.4105 -2.4884 35 1 4.6663 -2.5472 -5.9006 36 1 4.3283 -3.8386 -7.9714 37 1 2.6536 -5.6698 -8.0087 38 1 -0.3822 -3.0286 -2.1523 39 1 -1.1138 -4.2960 -1.1183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098100708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:23 Heat of formation + Delta-G solvation = -13.532264 kcal Electronic energy + Delta-G solvation = -25216.703676 eV Core-core repulsion = 21460.422645 eV Total energy + Delta-G solvation = -3756.281031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06338 -41.65759 -40.85245 -39.56188 -35.40633 -34.46083 -33.59869 -32.18113 -30.97677 -30.42646 -29.34908 -26.29284 -25.80792 -24.53711 -23.06423 -21.58661 -21.51546 -20.38846 -19.13435 -18.85710 -18.68247 -18.18187 -17.17593 -17.04989 -16.76249 -16.53021 -15.95508 -15.66147 -15.48333 -15.09624 -14.89274 -14.53103 -14.35371 -14.13926 -13.73004 -13.67784 -13.47908 -12.93392 -12.90110 -12.77900 -12.69640 -12.12051 -11.94213 -11.88833 -11.73760 -11.50937 -11.08420 -11.02746 -10.95812 -10.87329 -10.58780 -10.23166 -9.92502 -8.87320 -7.74971 -5.14946 -0.58711 -0.01687 1.49561 1.49714 1.59482 1.63073 2.05145 2.51318 2.65398 2.90107 3.10006 3.38080 3.43848 3.60868 3.67194 3.87656 3.99063 4.05807 4.25715 4.35709 4.44130 4.45467 4.55942 4.61932 4.67417 4.79535 4.81963 4.88663 4.90551 5.08038 5.14900 5.17405 5.37508 5.49440 5.50679 5.56919 5.67987 5.89672 6.26828 6.41096 6.68560 7.06410 7.10986 7.73154 8.58669 9.32873 Molecular weight = 305.13amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004862 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.478180 B = 5757.948179 C = 7121.680130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.298 1.298 7 C -0.212 4.212 8 H 0.085 0.915 9 N -0.610 5.610 10 C 0.140 3.860 11 H 0.117 0.883 12 C -0.130 4.130 13 C -0.117 4.117 14 C 0.128 3.872 15 H 0.102 0.898 16 C 0.135 3.865 17 H 0.088 0.912 18 N -0.682 5.682 19 C 0.555 3.445 20 O -0.568 6.568 21 C 0.017 3.983 22 N -0.456 5.456 23 C 0.084 3.916 24 C -0.093 4.093 25 C -0.111 4.111 26 C 0.084 3.916 27 F -0.126 7.126 28 C -0.133 4.133 29 H 0.245 0.755 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.189 0.811 38 H 0.027 0.973 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -9.523 -13.417 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.225 1.225 7 C -0.341 4.341 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.033 3.967 11 H 0.134 0.866 12 C -0.169 4.169 13 C -0.157 4.157 14 C 0.021 3.979 15 H 0.120 0.880 16 C 0.029 3.971 17 H 0.106 0.894 18 N -0.330 5.330 19 C 0.341 3.659 20 O -0.448 6.448 21 C -0.120 4.120 22 N -0.168 5.168 23 C -0.077 4.077 24 C -0.112 4.112 25 C -0.137 4.137 26 C 0.061 3.939 27 F -0.104 7.104 28 C -0.173 4.173 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.220 0.780 36 H 0.221 0.779 37 H 0.206 0.794 38 H 0.046 0.954 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.742 -9.401 -12.553 17.955 hybrid contribution -0.169 0.772 -0.509 0.940 sum 8.573 -8.629 -13.061 17.848 Atomic orbital electron populations 1.69724 1.06284 1.24699 1.59277 1.25443 0.96333 1.00424 1.03868 0.85034 0.78315 0.79925 0.76225 1.18874 1.22628 1.22529 1.19403 0.90772 0.82953 1.40978 0.89690 1.46730 1.02229 0.99653 1.84473 1.23614 0.86814 0.95114 0.91125 0.86612 1.22936 0.97316 0.97939 0.98730 1.22811 0.96160 0.99006 0.97695 1.23349 0.97056 0.84741 0.92767 0.87981 1.22614 0.92028 0.98541 0.83952 0.89378 1.45833 1.41022 1.35592 1.10525 1.18212 0.82278 0.81795 0.83655 1.90766 1.35833 1.33694 1.84499 1.21177 0.99620 0.97147 0.94036 1.67640 1.04190 1.13062 1.31876 1.23702 0.97025 0.99539 0.87445 1.22883 0.95448 0.92017 1.00863 1.22167 0.95063 0.99501 0.96934 1.19078 0.90694 0.88248 0.95872 1.91563 1.63483 1.58461 1.96910 1.23340 0.96626 0.98040 0.99312 0.94546 0.94024 0.90995 0.89897 0.91819 0.75218 0.78015 0.77936 0.79394 0.95377 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.90 10.46 21.65 0.23 -55.67 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.98 45.11 29.55 68.60 2.03 47.13 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.21 -11.32 10.59 84.03 0.89 -10.43 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.61 -29.63 2.99 -615.24 -1.84 -31.47 16 10 C 0.14 6.65 4.72 46.25 0.22 6.87 16 11 H 0.12 6.47 5.52 -2.39 -0.01 6.46 16 12 C -0.13 -5.13 6.44 32.21 0.21 -4.92 16 13 C -0.12 -4.07 6.44 32.20 0.21 -3.87 16 14 C 0.13 5.00 5.04 46.21 0.23 5.23 16 15 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 16 C 0.13 5.27 2.73 46.61 0.13 5.40 16 17 H 0.09 3.32 7.36 -2.39 -0.02 3.30 16 18 N -0.68 -26.35 5.09 -437.62 -2.23 -28.57 16 19 C 0.55 21.58 7.80 86.83 0.68 22.25 16 20 O -0.57 -24.92 15.03 -3.83 -0.06 -24.98 16 21 C 0.02 0.55 6.75 41.91 0.28 0.84 16 22 N -0.46 -12.58 9.54 -184.79 -1.76 -14.34 16 23 C 0.08 1.39 11.18 84.86 0.95 2.34 16 24 C -0.09 -0.97 10.11 22.42 0.23 -0.74 16 25 C -0.11 -1.69 10.16 22.49 0.23 -1.46 16 26 C 0.08 2.27 7.32 22.76 0.17 2.44 16 27 F -0.13 -4.01 15.55 44.97 0.70 -3.31 16 28 C -0.13 -5.78 6.22 32.23 0.20 -5.58 16 29 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 32 H 0.08 2.41 7.82 -2.39 -0.02 2.39 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 16.01 7.95 -92.71 -0.74 15.27 16 35 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.20 0.03 8.06 -2.91 -0.02 0.00 16 37 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 39 H 0.07 2.72 7.82 -2.39 -0.02 2.71 16 Total: -1.00 -73.44 327.54 2.51 -70.93 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.36 Total: 25.24 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.08 Total: 15.04 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.60 Total: -130.05 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.70 Total: -3.31 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.44 2.51 -70.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098100708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.398 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds