Wall clock time and date at job start Tue Mar 31 2020 10:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.34277 * 2 1 4 4 C 1.54441 * 110.38446 * 237.59991 * 2 1 3 5 5 O 1.44690 * 103.57382 * 263.80685 * 4 2 1 6 6 C 1.44608 * 103.84319 * 321.79588 * 5 4 2 7 7 N 1.47592 * 105.58984 * 40.02069 * 6 5 4 8 8 C 1.34776 * 127.02019 * 155.26120 * 7 6 5 9 9 O 1.21279 * 120.00216 * 179.67973 * 8 7 6 10 10 C 1.50708 * 119.99878 * 359.67657 * 8 7 6 11 11 C 1.50700 * 109.47218 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96505 * 269.72442 * 11 10 8 13 13 C 1.38277 * 120.13693 * 179.76432 * 12 11 10 14 14 C 1.38123 * 120.06644 * 0.51667 * 13 12 11 15 15 C 1.38855 * 119.93344 * 359.73650 * 14 13 12 16 16 O 1.35748 * 120.06949 * 179.97438 * 15 14 13 17 17 C 1.34830 * 116.99889 * 354.48931 * 16 15 14 18 18 H 1.08001 * 120.00097 * 5.05400 * 17 16 15 19 19 C 1.38662 * 119.99905 * 185.05643 * 17 16 15 20 20 N 1.31555 * 119.99955 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46692 * 89.99894 * 21 19 17 23 23 H 1.48493 * 109.47333 * 209.99846 * 21 19 17 24 24 H 1.48499 * 109.47089 * 330.00624 * 21 19 17 25 25 C 1.38078 * 119.96463 * 89.99971 * 11 10 8 26 26 H 1.09000 * 109.47555 * 297.72737 * 1 2 3 27 27 H 1.09000 * 109.47024 * 57.72428 * 1 2 3 28 28 H 1.09000 * 109.47756 * 177.72531 * 1 2 3 29 29 H 1.08997 * 109.47256 * 182.27411 * 3 2 1 30 30 H 1.09001 * 109.47372 * 302.27518 * 3 2 1 31 31 H 1.09001 * 109.47031 * 62.27253 * 3 2 1 32 32 H 1.09002 * 110.60233 * 22.33008 * 4 2 1 33 33 H 1.09002 * 110.60069 * 145.28253 * 4 2 1 34 34 H 1.09001 * 110.34278 * 280.95557 * 6 5 4 35 35 H 1.08992 * 110.17415 * 158.99369 * 6 5 4 36 36 H 1.08992 * 109.46916 * 300.00613 * 10 8 7 37 37 H 1.09006 * 109.46785 * 60.00596 * 10 8 7 38 38 H 1.07998 * 119.93041 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.96226 * 180.25356 * 13 12 11 40 40 H 1.08003 * 120.02916 * 179.76806 * 14 13 12 41 41 H 0.97003 * 120.00049 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.03695 * 359.96196 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0618 1.4346 0.0000 4 6 2.0679 -0.7757 -1.2223 5 8 2.3284 -2.0986 -0.6972 6 6 2.8526 -1.8481 0.6270 7 7 2.0442 -0.7392 1.1704 8 6 1.8250 -0.4556 2.4696 9 8 1.1395 0.4971 2.7751 10 6 2.4318 -1.3223 3.5429 11 6 2.0364 -0.7946 4.8980 12 6 2.8325 0.1407 5.5343 13 6 2.4707 0.6310 6.7756 14 6 1.3180 0.1799 7.3886 15 6 0.5195 -0.7628 6.7548 16 8 -0.6136 -1.2085 7.3550 17 6 -0.8478 -0.7833 8.6128 18 1 -0.1925 -0.0551 9.0676 19 6 -1.9300 -1.2810 9.3227 20 7 -2.7279 -2.1683 8.7690 21 14 -2.2541 -0.6925 11.0656 22 1 -3.1421 0.4973 11.0292 23 1 -2.9102 -1.7763 11.8401 24 1 -0.9677 -0.3302 11.7130 25 6 0.8830 -1.2494 5.5056 26 1 -0.3634 0.4781 0.9096 27 1 -0.3633 0.5488 -0.8689 28 1 -0.3634 -1.0268 -0.0408 29 1 3.1509 1.4183 -0.0408 30 1 1.6736 1.9660 -0.8689 31 1 1.7398 1.9414 0.9097 32 1 1.3168 -0.8172 -2.0112 33 1 2.9876 -0.3212 -1.5906 34 1 3.9014 -1.5569 0.5706 35 1 2.7406 -2.7357 1.2497 36 1 2.0703 -2.3446 3.4318 37 1 3.5178 -1.3088 3.4500 38 1 3.7364 0.4919 5.0588 39 1 3.0922 1.3642 7.2681 40 1 1.0379 0.5604 8.3598 41 1 -3.4848 -2.5168 9.2656 42 1 0.2638 -1.9825 5.0100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808009898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:17 Heat of formation + Delta-G solvation = -94.086265 kcal Electronic energy + Delta-G solvation = -24868.538406 eV Core-core repulsion = 21199.931845 eV Total energy + Delta-G solvation = -3668.606561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81261 -40.79426 -39.54181 -38.12288 -35.66670 -34.40557 -34.14810 -32.97069 -30.88323 -28.58324 -28.38218 -27.36222 -27.25947 -26.16416 -23.46942 -23.11614 -21.90369 -20.01768 -19.46266 -18.76821 -18.10530 -17.71423 -16.84380 -16.72300 -16.36093 -16.17488 -16.10266 -15.74541 -15.54191 -15.37880 -14.96719 -14.73366 -14.45586 -14.33639 -14.14246 -13.88791 -13.64233 -13.41585 -13.06627 -13.00338 -12.82564 -12.74712 -12.47373 -12.40490 -12.35834 -12.23329 -12.11108 -11.94165 -11.21746 -11.04670 -10.91138 -10.79782 -9.84467 -9.65566 -8.99105 -8.47780 -6.16624 0.49059 0.74670 1.33288 1.43086 1.51518 1.57468 1.80764 2.17126 2.80381 2.86859 3.15074 3.41715 3.52609 3.62248 3.78831 3.84982 4.00038 4.06198 4.11657 4.29207 4.37746 4.40518 4.52409 4.55619 4.56930 4.58195 4.62350 4.66495 4.72406 4.77486 4.85120 5.01802 5.08917 5.11889 5.18195 5.28798 5.29367 5.63696 5.67320 5.71463 5.73872 6.01900 6.21211 6.39523 6.96584 7.12037 7.78246 8.75845 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.003013 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.156637 B = 9290.674370 C = 9651.229417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 C -0.147 4.147 4 C 0.052 3.948 5 O -0.382 6.382 6 C 0.254 3.746 7 N -0.639 5.639 8 C 0.540 3.460 9 O -0.562 6.562 10 C -0.088 4.088 11 C -0.026 4.026 12 C -0.178 4.178 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.112 3.888 16 O -0.236 6.236 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.252 1.252 25 C -0.193 4.193 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.133 3.197 -19.395 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 C -0.205 4.205 4 C -0.024 4.024 5 O -0.298 6.298 6 C 0.094 3.906 7 N -0.381 5.381 8 C 0.330 3.670 9 O -0.439 6.439 10 C -0.127 4.127 11 C -0.026 4.026 12 C -0.196 4.196 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.062 3.938 16 O -0.143 6.143 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.175 1.175 25 C -0.212 4.212 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.375 3.211 -19.305 24.888 hybrid contribution -0.972 0.265 1.136 1.518 sum 14.403 3.477 -18.170 23.445 Atomic orbital electron populations 1.22057 0.94387 1.01991 1.02659 1.22002 0.94840 0.93962 0.85825 1.22007 1.01739 0.93915 1.02866 1.24031 1.02568 0.81284 0.94529 1.89423 1.84925 1.26888 1.28604 1.23802 0.93763 0.90490 0.82500 1.49541 1.52161 1.31529 1.04886 1.20458 0.79860 0.84957 0.81748 1.90745 1.39867 1.31450 1.81827 1.20727 1.04459 0.99698 0.87799 1.19134 0.92875 0.95967 0.94643 1.20961 1.02094 1.00314 0.96245 1.21140 0.94606 0.98081 0.95226 1.21302 0.99227 1.03194 1.02770 1.19861 0.86856 0.93539 0.93513 1.83936 1.35580 1.65324 1.29411 1.21839 1.13751 1.25367 0.88154 0.88191 1.26629 0.94647 0.96019 1.04850 1.70194 1.16201 1.29843 1.39835 0.84568 0.79459 0.78095 0.73943 1.18942 1.19358 1.17503 1.20200 1.00077 1.05942 0.95024 0.94422 0.89112 0.92963 0.90868 0.89255 0.94100 0.86133 0.88205 0.87861 0.86633 0.86436 0.83679 0.83375 0.83578 0.86424 0.91849 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.53 71.98 0.61 -2.77 16 2 C 0.12 2.17 0.95 3.87 0.00 2.17 16 3 C -0.15 -2.51 8.58 71.98 0.62 -1.89 16 4 C 0.05 0.63 6.84 72.47 0.50 1.12 16 5 O -0.38 -6.14 11.80 -148.98 -1.76 -7.89 16 6 C 0.25 3.42 7.60 127.56 0.97 4.38 16 7 N -0.64 -13.26 2.89 -880.09 -2.55 -15.81 16 8 C 0.54 15.14 7.53 87.66 0.66 15.80 16 9 O -0.56 -21.66 14.08 -3.03 -0.04 -21.71 16 10 C -0.09 -2.10 4.92 29.10 0.14 -1.96 16 11 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 12 C -0.18 -5.82 9.70 22.30 0.22 -5.61 16 13 C -0.07 -2.65 10.04 22.25 0.22 -2.43 16 14 C -0.25 -11.43 9.17 22.39 0.21 -11.22 16 15 C 0.11 5.99 6.65 22.58 0.15 6.14 16 16 O -0.24 -15.00 9.76 -22.72 -0.22 -15.22 16 17 C -0.42 -25.30 9.49 67.92 0.64 -24.66 16 18 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 19 C -0.02 -1.44 5.49 84.84 0.47 -0.97 16 20 N -0.92 -58.54 13.67 21.62 0.30 -58.24 16 21 Si 1.02 44.34 29.55 68.60 2.03 46.36 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 25 C -0.19 -8.88 9.65 22.39 0.22 -8.67 16 26 H 0.04 1.13 6.94 -2.39 -0.02 1.12 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.01 7.06 -2.39 -0.02 1.00 16 32 H 0.12 1.09 7.86 -2.39 -0.02 1.08 16 33 H 0.10 0.72 7.84 -2.39 -0.02 0.70 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 1.27 7.60 -2.39 -0.02 1.25 16 36 H 0.12 2.45 7.88 -2.39 -0.02 2.43 16 37 H 0.15 2.14 8.08 -2.38 -0.02 2.12 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -84.74 349.84 4.32 -80.42 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.02 Total: 23.64 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.54 Total: -31.55 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.25 Total: -74.05 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -2.02 Total: -44.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -84.74 4.32 -80.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808009898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -84.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds