Wall clock time and date at job start Tue Mar 31 2020 10:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34234 * 116.99539 * 2 1 4 4 O 1.20823 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99594 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47011 * 155.00060 * 5 3 2 7 7 C 1.52997 * 109.47109 * 274.99908 * 5 3 2 8 8 C 1.50706 * 109.47198 * 300.00038 * 7 5 3 9 9 C 1.38238 * 119.99775 * 90.00136 * 8 7 5 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38233 * 120.00212 * 270.02182 * 8 7 5 14 14 N 1.46496 * 109.47448 * 34.99976 * 5 3 2 15 15 C 1.34777 * 119.99880 * 59.99627 * 14 5 3 16 16 O 1.21279 * 120.00066 * 0.02562 * 15 14 5 17 17 C 1.50706 * 119.99676 * 180.02562 * 15 14 5 18 18 C 1.50700 * 109.46733 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00413 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99906 * 179.97438 * 18 17 15 21 21 N 1.31511 * 119.99568 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46715 * 90.00410 * 22 20 18 24 24 H 1.48498 * 109.47294 * 210.00168 * 22 20 18 25 25 H 1.48496 * 109.47408 * 330.00709 * 22 20 18 26 26 H 1.08998 * 109.47296 * 299.99879 * 1 2 3 27 27 H 1.08990 * 109.46989 * 60.00483 * 1 2 3 28 28 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47589 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47139 * 299.99776 * 6 5 3 31 31 H 1.09002 * 109.47575 * 59.99980 * 6 5 3 32 32 H 1.09003 * 109.47286 * 180.02562 * 7 5 3 33 33 H 1.09002 * 109.47284 * 59.99811 * 7 5 3 34 34 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 35 35 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 36 36 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 38 38 H 1.07999 * 119.99956 * 0.02562 * 13 8 7 39 39 H 0.96995 * 120.00034 * 240.00107 * 14 5 3 40 40 H 1.08998 * 109.46995 * 299.99592 * 17 15 14 41 41 H 1.08993 * 109.47164 * 59.99974 * 17 15 14 42 42 H 0.97003 * 119.99325 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0074 2.6071 -0.6091 7 6 4.0816 1.1764 1.4378 8 6 3.5187 2.3126 2.2523 9 6 2.3171 2.1570 2.9178 10 6 1.8010 3.1990 3.6653 11 6 2.4868 4.3963 3.7479 12 6 3.6858 4.5538 3.0781 13 6 4.2037 3.5105 2.3337 14 7 4.1136 0.1706 -0.7912 15 6 3.7942 0.0533 -2.0953 16 8 3.0541 0.8624 -2.6134 17 6 4.3567 -1.0832 -2.9096 18 6 3.8497 -0.9857 -4.3254 19 1 3.1868 -0.1811 -4.6075 20 6 4.2330 -1.9232 -5.2610 21 7 5.0406 -2.9027 -4.9176 22 14 3.6040 -1.8028 -7.0158 23 1 4.5407 -0.9794 -7.8219 24 1 3.5105 -3.1638 -7.6026 25 1 2.2608 -1.1695 -7.0178 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 5.0959 2.6644 -0.6083 30 1 3.6403 2.6773 -1.6330 31 1 3.6003 3.4289 -0.0200 32 1 5.1701 1.2339 1.4383 33 1 3.7674 0.2274 1.8722 34 1 1.7815 1.2213 2.8536 35 1 0.8620 3.0775 4.1849 36 1 2.0838 5.2103 4.3323 37 1 4.2194 5.4907 3.1391 38 1 5.1421 3.6324 1.8132 39 1 4.7058 -0.4764 -0.3768 40 1 5.4452 -1.0264 -2.9092 41 1 4.0422 -2.0320 -2.4751 42 1 5.3099 -3.5625 -5.5758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:10 Heat of formation + Delta-G solvation = -100.616706 kcal Electronic energy + Delta-G solvation = -25722.660895 eV Core-core repulsion = 22053.771153 eV Total energy + Delta-G solvation = -3668.889742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90966 -39.21943 -38.62899 -36.39541 -35.51647 -32.94063 -32.55832 -31.06048 -30.21544 -28.37560 -27.78745 -26.94809 -24.13255 -23.31970 -22.55791 -21.76149 -20.04554 -19.42547 -17.61689 -16.86267 -16.62746 -16.48125 -16.12866 -15.69054 -15.38988 -15.14429 -14.65331 -14.45768 -14.19702 -13.64562 -13.46142 -13.36358 -13.17210 -12.84041 -12.67565 -12.36236 -12.09558 -12.02225 -11.90781 -11.77113 -11.41308 -11.23472 -11.18423 -11.07340 -10.77778 -10.65163 -10.50770 -10.23862 -9.95902 -9.28163 -9.00276 -8.84817 -8.69658 -8.61990 -8.42957 -6.06398 -4.05618 1.20410 1.30492 2.47902 2.91137 3.34704 3.39989 3.45862 3.53799 3.66857 3.79620 4.47917 4.60977 4.63979 4.75558 4.87094 4.88215 4.97885 5.11199 5.26216 5.30506 5.32653 5.36695 5.38388 5.54093 5.59722 5.69292 5.84308 5.87034 5.92997 5.97454 6.26717 6.33026 6.39301 6.45815 6.50954 6.67761 6.82581 6.88789 7.15971 7.31773 7.93247 7.99162 8.06962 8.37664 9.04907 9.14542 9.59283 11.05953 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.003627 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.576948 B = 7718.345432 C = 8106.505908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.472 3.528 4 O -0.500 6.500 5 C 0.197 3.803 6 C -0.156 4.156 7 C -0.083 4.083 8 C -0.082 4.082 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.106 4.106 14 N -0.736 5.736 15 C 0.520 3.480 16 O -0.536 6.536 17 C 0.008 3.992 18 C -0.507 4.507 19 H 0.075 0.925 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.402 0.598 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 8.733 19.489 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.313 3.687 4 O -0.386 6.386 5 C 0.108 3.892 6 C -0.214 4.214 7 C -0.121 4.121 8 C -0.082 4.082 9 C -0.124 4.124 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.124 4.124 14 N -0.393 5.393 15 C 0.311 3.689 16 O -0.411 6.411 17 C -0.031 4.031 18 C -0.546 4.546 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.197 1.197 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.237 0.763 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.786 9.455 18.996 21.401 hybrid contribution -0.291 -0.352 -0.758 0.885 sum -3.077 9.103 18.238 20.614 Atomic orbital electron populations 1.23194 0.77077 1.03371 1.02056 1.86543 1.22782 1.33429 1.83804 1.23879 0.91825 0.81460 0.71586 1.90615 1.66574 1.36408 1.44985 1.19995 0.85683 0.91092 0.92414 1.22211 1.01365 0.93863 1.03957 1.20878 1.02136 0.98001 0.91083 1.19597 0.95489 0.95166 0.97959 1.20990 0.95216 0.99102 0.97076 1.21064 0.99641 0.93487 0.99236 1.21127 0.95518 0.97401 0.99834 1.21117 0.96356 0.98758 0.97623 1.21057 1.00085 0.92618 0.98600 1.46456 1.52535 1.29233 1.11092 1.22121 0.79363 0.87392 0.80069 1.90542 1.36337 1.43629 1.70611 1.19231 0.97770 0.91116 0.94951 1.21151 1.28972 1.11695 0.92753 0.90731 1.24991 0.95152 0.95162 0.99242 1.69957 1.34806 1.14517 1.34736 0.86444 0.79517 0.77096 0.84123 1.20608 1.21269 1.19711 0.92534 0.91922 0.88352 0.91268 0.89468 0.90699 0.88294 0.89296 0.86700 0.86258 0.86268 0.86046 0.85742 0.76273 0.93309 0.93201 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.35 -6.06 10.17 -39.27 -0.40 -6.46 16 3 C 0.47 8.40 4.11 36.01 0.15 8.55 16 4 O -0.50 -9.79 15.20 -18.75 -0.28 -10.08 16 5 C 0.20 3.02 0.80 -132.98 -0.11 2.92 16 6 C -0.16 -2.46 7.34 37.15 0.27 -2.19 16 7 C -0.08 -0.93 4.56 -27.88 -0.13 -1.06 16 8 C -0.08 -0.95 4.09 -104.62 -0.43 -1.38 16 9 C -0.11 -1.25 8.33 -39.58 -0.33 -1.58 16 10 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 12 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 13 C -0.11 -1.12 7.88 -39.58 -0.31 -1.43 16 14 N -0.74 -12.24 4.88 -48.69 -0.24 -12.48 16 15 C 0.52 11.53 7.15 -10.98 -0.08 11.45 16 16 O -0.54 -13.70 12.67 5.56 0.07 -13.63 16 17 C 0.01 0.21 5.46 -29.03 -0.16 0.05 16 18 C -0.51 -14.58 8.92 -34.44 -0.31 -14.89 16 19 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.72 6.17 -51.93 -0.32 1.40 16 31 H 0.07 1.13 5.90 -51.93 -0.31 0.82 16 32 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.11 1.31 8.03 -52.48 -0.42 0.89 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.11 8.02 -52.49 -0.42 0.69 16 39 H 0.40 5.38 8.47 -40.82 -0.35 5.04 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -34.99 352.69 -7.42 -42.41 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.95 Total: 4.53 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.65 Total: -1.32 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.50 Total: -37.86 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.61 Total: -30.17 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.99 -7.42 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.204 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds