Wall clock time and date at job start Tue Mar 31 2020 10:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47127 * 2 1 4 4 C 1.38254 * 120.00005 * 270.02125 * 3 2 1 5 5 C 1.38217 * 119.99772 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00412 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99771 * 0.02711 * 6 5 4 8 8 C 1.50696 * 119.99966 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47279 * 269.95163 * 8 7 6 10 10 O 1.21286 * 120.00084 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99967 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99864 * 0.02562 * 11 9 8 13 13 H 1.08000 * 120.00217 * 8.08115 * 12 11 9 14 14 C 1.38948 * 119.99629 * 188.07239 * 12 11 9 15 15 N 1.31406 * 120.00089 * 26.13160 * 14 12 11 16 16 Si 1.86800 * 119.99910 * 206.12625 * 14 12 11 17 17 H 1.48497 * 109.47072 * 84.99413 * 16 14 12 18 18 H 1.48495 * 109.47247 * 204.99093 * 16 14 12 19 19 H 1.48505 * 109.47277 * 324.99391 * 16 14 12 20 20 C 1.46493 * 120.00027 * 179.97438 * 11 9 8 21 21 C 1.53007 * 109.46888 * 83.25573 * 20 11 9 22 22 C 1.50692 * 109.47282 * 180.02562 * 21 20 11 23 23 O 1.20832 * 120.00213 * 0.02562 * 22 21 20 24 24 O 1.34233 * 120.00230 * 179.97438 * 22 21 20 25 25 C 1.38215 * 119.99880 * 90.00288 * 3 2 1 26 26 H 1.08999 * 109.47019 * 59.99849 * 1 2 3 27 27 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46623 * 299.99852 * 1 2 3 29 29 H 1.08995 * 109.46917 * 239.99837 * 2 1 3 30 30 H 1.08999 * 109.47019 * 120.00151 * 2 1 3 31 31 H 1.07995 * 120.00118 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99643 * 180.02562 * 5 4 3 33 33 H 1.07993 * 120.00364 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.46812 * 29.95683 * 8 7 6 35 35 H 1.09005 * 109.47105 * 149.95701 * 8 7 6 36 36 H 0.96998 * 120.00318 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47471 * 203.24903 * 20 11 9 38 38 H 1.08998 * 109.47381 * 323.25803 * 20 11 9 39 39 H 1.09004 * 109.46871 * 300.00036 * 21 20 11 40 40 H 1.09001 * 109.47359 * 59.99673 * 21 20 11 41 41 H 0.96700 * 116.99750 * 179.97438 * 24 22 21 42 42 H 1.08003 * 120.00098 * 359.71822 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0726 -1.1973 5 6 2.7226 3.3759 -1.1973 6 6 2.9525 4.0279 0.0001 7 6 2.7226 3.3762 1.1970 8 6 2.9736 4.0866 2.5021 9 6 4.3967 3.8494 2.9375 10 8 5.1346 3.1707 2.2550 11 7 4.8498 4.3924 4.0849 12 6 4.0158 5.1601 4.8562 13 1 2.9647 5.2237 4.6162 14 6 4.5228 5.8560 5.9466 15 7 5.7867 6.2151 5.9670 16 14 3.4078 6.2814 7.3837 17 1 3.3516 5.1329 8.3234 18 1 3.9432 7.4729 8.0899 19 1 2.0422 6.5764 6.8804 20 6 6.2330 4.1613 4.5085 21 6 7.1559 5.1556 3.8008 22 6 8.5788 4.9176 4.2360 23 8 8.8293 4.0422 5.0303 24 8 9.5683 5.6774 3.7404 25 6 2.2628 2.0723 1.1970 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.0817 1.5638 -2.1326 32 1 2.9019 3.8853 -2.1326 33 1 3.3117 5.0464 0.0001 34 1 2.8069 5.1558 2.3716 35 1 2.2925 3.7027 3.2617 36 1 6.1407 6.7013 6.7280 37 1 6.3104 4.2982 5.5871 38 1 6.5274 3.1444 4.2492 39 1 7.0785 5.0187 2.7221 40 1 6.8615 6.1726 4.0600 41 1 10.4646 5.4873 4.0496 42 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597581392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:35 Heat of formation + Delta-G solvation = -109.468006 kcal Electronic energy + Delta-G solvation = -24851.628083 eV Core-core repulsion = 21182.354519 eV Total energy + Delta-G solvation = -3669.273563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.65578 -39.35080 -38.26166 -35.62169 -35.07793 -34.11238 -32.03990 -31.69331 -30.56486 -29.24669 -27.08894 -25.17718 -23.80655 -23.65154 -21.69933 -20.60499 -19.89413 -19.08759 -17.58084 -16.86104 -16.23840 -16.06860 -15.57859 -15.37824 -15.17740 -14.79831 -14.43530 -14.09706 -13.98835 -13.52677 -13.37368 -13.00620 -12.71001 -12.65145 -12.41401 -12.27606 -11.84594 -11.66178 -11.64046 -11.40496 -11.25408 -11.08780 -10.92528 -10.87618 -10.64339 -10.49878 -10.47450 -10.42706 -9.94090 -9.83909 -9.07636 -8.65084 -8.37220 -8.12172 -7.96686 -6.55663 -3.97426 1.74107 1.78476 2.96118 3.05972 3.18177 3.18718 3.62928 3.89066 4.01094 4.11373 4.81132 4.89536 4.95119 5.01885 5.27938 5.31786 5.40734 5.47652 5.58581 5.78270 5.82018 5.90270 5.93661 5.99082 6.05851 6.08930 6.18731 6.24222 6.31104 6.40953 6.48264 6.50697 6.66094 6.81635 6.90778 7.00391 7.09509 7.14802 7.24202 7.38641 7.42834 7.60369 8.28364 8.56008 8.96274 9.41218 9.82513 10.47135 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.004137 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.998000 B = 6765.773283 C = 8092.167332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.040 4.040 8 C -0.088 4.088 9 C 0.458 3.542 10 O -0.598 6.598 11 N -0.442 5.442 12 C -0.342 4.342 13 H 0.104 0.896 14 C 0.041 3.959 15 N -0.859 5.859 16 Si 0.917 3.083 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.153 3.847 21 C -0.110 4.110 22 C 0.491 3.509 23 O -0.529 6.529 24 O -0.526 6.526 25 C -0.105 4.105 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.272 0.728 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.396 0.604 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -3.043 -7.726 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.040 4.040 8 C -0.128 4.128 9 C 0.247 3.753 10 O -0.485 6.485 11 N -0.161 5.161 12 C -0.469 4.469 13 H 0.122 0.878 14 C -0.164 4.164 15 N -0.497 5.497 16 Si 0.743 3.257 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.029 3.971 21 C -0.149 4.149 22 C 0.335 3.665 23 O -0.418 6.418 24 O -0.337 6.337 25 C -0.123 4.123 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.153 0.847 41 H 0.253 0.747 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.247 -3.417 -7.821 10.019 hybrid contribution 0.273 0.368 1.082 1.175 sum -4.974 -3.048 -6.739 8.913 Atomic orbital electron populations 1.21743 0.95060 1.01269 1.02146 1.20503 0.95849 0.93130 1.02568 1.19754 0.99806 0.95835 0.93228 1.20844 1.01907 0.95141 0.97006 1.20993 1.00145 0.94984 0.97625 1.20966 0.99911 1.00117 0.92006 1.19556 0.95931 0.94008 0.94530 1.20504 0.96733 1.01365 0.94174 1.19924 0.89233 0.84485 0.81641 1.90571 1.58883 1.44201 1.54800 1.43791 1.10130 1.43537 1.18612 1.19685 0.92251 1.26406 1.08534 0.87845 1.25144 0.96348 0.95629 0.99306 1.69980 1.14535 1.34762 1.30430 0.86107 0.80193 0.77930 0.81435 1.20192 1.21020 1.19450 1.20963 0.80087 0.94690 1.01341 1.21802 0.85316 1.06778 1.00960 1.23947 0.88302 0.77141 0.77112 1.90630 1.84674 1.32898 1.33593 1.84616 1.20012 1.60729 1.68330 1.20833 0.99987 0.94183 0.97270 0.92737 0.92760 0.92511 0.91420 0.91165 0.86910 0.86654 0.86484 0.88933 0.89256 0.91743 0.87619 0.93336 0.89961 0.84709 0.74674 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.90 37.16 0.37 -1.07 16 2 C -0.08 -0.97 6.06 -27.88 -0.17 -1.13 16 3 C -0.09 -1.26 5.13 -104.63 -0.54 -1.80 16 4 C -0.13 -1.83 9.70 -39.58 -0.38 -2.21 16 5 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 6 C -0.11 -1.85 9.70 -39.58 -0.38 -2.24 16 7 C -0.04 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.09 -1.66 4.21 -29.04 -0.12 -1.78 16 9 C 0.46 10.59 7.57 -10.98 -0.08 10.51 16 10 O -0.60 -15.40 15.73 5.55 0.09 -15.31 16 11 N -0.44 -10.60 2.64 -114.81 -0.30 -10.90 16 12 C -0.34 -8.04 9.25 -14.93 -0.14 -8.18 16 13 H 0.10 2.27 6.47 -52.49 -0.34 1.93 16 14 C 0.04 0.96 4.87 -17.47 -0.09 0.87 16 15 N -0.86 -20.70 8.73 55.50 0.48 -20.22 16 16 Si 0.92 18.47 29.63 -169.99 -5.04 13.43 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 C 0.15 3.70 3.81 -4.04 -0.02 3.68 16 21 C -0.11 -2.44 5.61 -27.88 -0.16 -2.59 16 22 C 0.49 10.13 8.33 36.00 0.30 10.43 16 23 O -0.53 -12.09 16.74 -18.75 -0.31 -12.40 16 24 O -0.53 -8.74 13.42 -39.27 -0.53 -9.27 16 25 C -0.10 -1.74 9.36 -39.58 -0.37 -2.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.07 0.81 8.09 -51.93 -0.42 0.40 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.09 1.65 7.96 -51.93 -0.41 1.23 16 35 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 36 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 37 H 0.11 2.72 5.77 -51.93 -0.30 2.42 16 38 H 0.05 1.22 7.59 -51.93 -0.39 0.83 16 39 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.14 3.13 6.42 -51.93 -0.33 2.80 16 41 H 0.40 4.55 9.10 45.56 0.41 4.97 16 42 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -29.45 356.47 -7.99 -37.45 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.12 Total: 12.77 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.63 Total: -0.92 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.18 Total: -31.12 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.75 Total: -36.98 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.45 -7.99 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597581392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.020 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds