Wall clock time and date at job start Tue Mar 31 2020 08:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47135 * 2 1 4 4 N 1.46500 * 109.46722 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99976 * 269.99389 * 4 3 2 6 6 C 1.50697 * 109.47337 * 270.00471 * 5 4 3 7 7 O 1.20829 * 120.00236 * 0.02562 * 6 5 4 8 8 O 1.34234 * 119.99849 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99915 * 90.00329 * 4 3 2 10 10 O 1.21273 * 120.00160 * 359.97438 * 9 4 3 11 11 C 1.50701 * 119.99840 * 179.97438 * 9 4 3 12 12 H 1.09000 * 109.47361 * 59.99652 * 11 9 4 13 13 C 1.50704 * 109.47269 * 299.99653 * 11 9 4 14 14 H 1.08007 * 119.99759 * 325.08529 * 13 11 9 15 15 C 1.37871 * 120.00297 * 144.80333 * 13 11 9 16 16 N 1.31519 * 120.00201 * 184.90555 * 15 13 11 17 17 Si 1.86804 * 119.99928 * 4.91382 * 15 13 11 18 18 H 1.48498 * 109.47097 * 84.65991 * 17 15 13 19 19 H 1.48499 * 109.47010 * 204.66496 * 17 15 13 20 20 H 1.48501 * 109.46835 * 324.66056 * 17 15 13 21 21 C 1.50703 * 109.47293 * 179.97438 * 11 9 4 22 22 C 1.38237 * 119.99549 * 65.01859 * 21 11 9 23 23 C 1.38241 * 119.99635 * 179.81008 * 22 21 11 24 24 C 1.38235 * 119.99836 * 0.40087 * 23 22 21 25 25 C 1.38234 * 120.00060 * 359.85506 * 24 23 22 26 26 C 1.38228 * 119.99991 * 245.29529 * 21 11 9 27 27 H 1.08999 * 109.47129 * 60.00403 * 1 2 3 28 28 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47396 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47101 * 239.99579 * 2 1 3 31 31 H 1.08999 * 109.46942 * 120.00118 * 2 1 3 32 32 H 1.08997 * 109.47058 * 59.99695 * 3 2 1 33 33 H 1.08999 * 109.46783 * 299.99809 * 3 2 1 34 34 H 1.09002 * 109.47083 * 30.00829 * 5 4 3 35 35 H 1.09000 * 109.46981 * 150.00279 * 5 4 3 36 36 H 0.96694 * 116.99601 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99787 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.00263 * 0.02562 * 22 21 11 39 39 H 1.08001 * 120.00228 * 180.22984 * 23 22 21 40 40 H 1.08000 * 120.00052 * 179.83531 * 24 23 22 41 41 H 1.08006 * 119.99928 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00078 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.4880 2.8635 1.7045 7 8 4.0953 3.7818 1.0245 8 8 5.1469 3.1089 2.8480 9 6 4.1794 1.4422 -1.1663 10 8 3.5735 1.4417 -2.2168 11 6 5.6864 1.4427 -1.1657 12 1 6.0498 0.5530 -0.6513 13 6 6.1881 2.6736 -0.4555 14 1 5.6447 3.6034 -0.5373 15 6 7.3375 2.6114 0.3034 16 7 7.7227 3.6580 1.0005 17 14 8.3477 1.0406 0.3413 18 1 9.2742 1.0198 -0.8190 19 1 9.1313 0.9863 1.6016 20 1 7.4406 -0.1331 0.2716 21 6 6.1894 1.4418 -2.5863 22 6 5.9431 2.5263 -3.4073 23 6 6.4079 2.5271 -4.7093 24 6 7.1117 1.4400 -5.1925 25 6 7.3534 0.3533 -4.3731 26 6 6.8920 0.3541 -3.0700 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6476 0.9289 2.0292 35 1 5.1894 0.9288 1.1398 36 1 5.2842 4.0363 3.0850 37 1 8.5316 3.6143 1.5341 38 1 5.3906 3.3743 -3.0306 39 1 6.2187 3.3760 -5.3497 40 1 7.4726 1.4395 -6.2105 41 1 7.9030 -0.4963 -4.7508 42 1 7.0809 -0.4949 -2.4297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589660607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:03 Heat of formation + Delta-G solvation = -100.263102 kcal Electronic energy + Delta-G solvation = -26523.306251 eV Core-core repulsion = 22854.431843 eV Total energy + Delta-G solvation = -3668.874409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.98856 -38.79085 -37.97465 -35.57770 -34.91856 -33.89242 -32.75030 -31.48848 -30.12400 -28.23277 -27.77773 -25.66667 -23.42807 -21.87772 -21.72135 -21.37100 -20.42910 -18.26001 -17.45041 -16.98980 -16.45429 -16.23777 -15.70418 -15.52551 -14.74926 -14.57847 -14.44230 -14.33489 -13.75824 -13.74732 -13.03523 -12.96421 -12.70303 -12.52524 -12.21305 -12.13825 -12.03010 -11.94031 -11.76934 -11.45564 -11.19862 -11.13825 -10.98646 -10.55081 -10.50484 -10.42553 -10.19150 -9.94547 -9.70381 -9.40238 -9.01112 -8.67531 -8.21241 -8.12453 -7.80857 -6.32245 -4.33979 2.15679 2.22325 3.07239 3.18013 3.19472 3.25196 3.37289 3.60979 4.16164 4.18347 4.61340 4.97241 5.08314 5.16006 5.35570 5.45502 5.49677 5.55647 5.61120 5.71223 5.79609 5.84491 5.89345 5.94311 5.98613 6.10698 6.22018 6.26296 6.31692 6.33585 6.42877 6.44398 6.73065 6.85932 7.04676 7.17526 7.25548 7.26748 7.53943 7.59376 7.79041 7.94761 8.24434 8.79281 8.91579 9.02694 9.24200 10.77245 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.007860 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.796255 B = 3561.534605 C = 5130.823207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.119 3.881 4 N -0.597 5.597 5 C 0.138 3.862 6 C 0.487 3.513 7 O -0.504 6.504 8 O -0.519 6.519 9 C 0.543 3.457 10 O -0.549 6.549 11 C 0.016 3.984 12 H 0.071 0.929 13 C -0.519 4.519 14 H 0.098 0.902 15 C 0.089 3.911 16 N -0.870 5.870 17 Si 0.855 3.145 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.027 4.027 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.137 4.137 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.403 0.597 37 H 0.268 0.732 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -6.880 1.404 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.004 4.004 4 N -0.330 5.330 5 C 0.012 3.988 6 C 0.327 3.673 7 O -0.390 6.390 8 O -0.329 6.329 9 C 0.334 3.666 10 O -0.427 6.427 11 C -0.006 4.006 12 H 0.088 0.912 13 C -0.556 4.556 14 H 0.116 0.884 15 C -0.117 4.117 16 N -0.504 5.504 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.028 4.028 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.155 4.155 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.577 -6.933 0.682 9.580 hybrid contribution 1.063 -0.043 0.260 1.095 sum -5.514 -6.975 0.943 8.942 Atomic orbital electron populations 1.21677 0.95516 1.01468 1.01813 1.21917 0.95766 0.97776 1.02422 1.21399 0.79902 0.96100 1.02990 1.47450 1.05553 1.74572 1.05386 1.20736 0.99829 0.91670 0.86518 1.23194 0.73708 0.92752 0.77631 1.90621 1.49291 1.46511 1.52578 1.84367 1.71518 1.35757 1.41299 1.21193 0.90891 0.72470 0.82025 1.90589 1.71031 1.50151 1.30894 1.18662 0.88875 1.00886 0.92146 0.91173 1.20883 1.10753 0.95517 1.28488 0.88402 1.24938 0.96317 0.96025 0.94401 1.69837 1.23749 1.29204 1.27651 0.87199 0.81699 0.84464 0.78424 1.19188 1.20906 1.18805 1.20030 0.94987 0.92559 0.95259 1.20858 0.97542 0.97922 0.92631 1.21036 0.99453 0.98088 0.96109 1.20858 1.01427 0.94754 0.99045 1.20872 1.01219 0.98273 0.94310 1.20953 1.00903 0.98034 0.95641 0.92569 0.92804 0.92814 0.91470 0.92070 0.91343 0.89973 0.88477 0.86396 0.73893 0.92153 0.86497 0.87140 0.87342 0.87287 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.19 16 2 C -0.14 -1.82 6.26 -26.73 -0.17 -1.99 16 3 C 0.12 1.87 5.41 -4.04 -0.02 1.85 16 4 N -0.60 -11.13 1.96 -175.06 -0.34 -11.48 16 5 C 0.14 2.38 5.55 -5.19 -0.03 2.35 16 6 C 0.49 9.64 6.00 36.00 0.22 9.85 16 7 O -0.50 -11.74 15.25 -18.75 -0.29 -12.03 16 8 O -0.52 -9.31 13.42 -39.27 -0.53 -9.84 16 9 C 0.54 11.92 6.96 -10.98 -0.08 11.84 16 10 O -0.55 -13.10 14.95 5.56 0.08 -13.02 16 11 C 0.02 0.35 1.11 -94.07 -0.10 0.25 16 12 H 0.07 1.53 4.13 -51.93 -0.21 1.32 16 13 C -0.52 -12.96 4.51 -34.44 -0.16 -13.11 16 14 H 0.10 2.84 6.47 -52.48 -0.34 2.50 16 15 C 0.09 2.23 5.04 -17.82 -0.09 2.14 16 16 N -0.87 -22.98 13.96 55.43 0.77 -22.21 16 17 Si 0.86 19.17 27.05 -169.99 -4.60 14.57 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.26 -5.40 6.06 56.52 0.34 -5.06 16 21 C -0.03 -0.62 4.11 -104.62 -0.43 -1.05 16 22 C -0.07 -1.59 8.25 -39.58 -0.33 -1.92 16 23 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 24 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 25 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 26 C -0.14 -2.80 9.50 -39.58 -0.38 -3.17 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.96 8.07 -51.93 -0.42 0.55 16 33 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 34 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.12 2.13 5.89 -51.93 -0.31 1.82 16 36 H 0.40 6.37 9.10 45.56 0.41 6.79 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.12 2.76 7.93 -52.49 -0.42 2.35 16 39 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.11 2.01 7.95 -52.49 -0.42 1.59 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -30.86 347.85 -7.12 -37.98 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.08 Total: 13.45 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.39 Total: -2.67 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.43 Total: -33.68 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.73 Total: -34.89 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.60 Total: 14.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.86 -7.12 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589660607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.280 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds