Wall clock time and date at job start Tue Mar 31 2020 08:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35726 * 117.00168 * 2 1 4 4 C 1.39184 * 119.84323 * 0.02562 * 3 2 1 5 5 C 1.36546 * 120.39407 * 180.02562 * 4 3 2 6 6 C 1.40035 * 120.05873 * 359.68386 * 5 4 3 7 7 C 1.46733 * 120.15979 * 180.31612 * 6 5 4 8 8 C 1.35159 * 120.00250 * 310.13942 * 7 6 5 9 9 C 1.41811 * 119.99805 * 349.71698 * 8 7 6 10 10 O 1.21741 * 119.99926 * 353.22597 * 9 8 7 11 11 N 1.34780 * 119.99998 * 173.22071 * 9 8 7 12 12 C 1.46500 * 120.00216 * 0.02562 * 11 9 8 13 13 C 1.46503 * 119.99745 * 180.02562 * 11 9 8 14 14 C 1.50698 * 109.46942 * 90.00643 * 13 11 9 15 15 H 1.07998 * 120.00302 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99646 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99521 * 179.97438 * 16 14 13 18 18 Si 1.86789 * 120.00227 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47090 * 90.00336 * 18 16 14 20 20 H 1.48506 * 109.47278 * 210.00319 * 18 16 14 21 21 H 1.48498 * 109.47406 * 330.00401 * 18 16 14 22 22 C 1.40557 * 119.68439 * 0.56813 * 6 5 4 23 23 O 1.35684 * 120.19430 * 179.72456 * 22 6 5 24 24 C 1.42904 * 117.00253 * 179.72863 * 23 22 6 25 25 C 1.38409 * 119.61732 * 359.45701 * 22 6 5 26 26 H 1.08998 * 109.47586 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47225 * 299.99801 * 1 2 3 28 28 H 1.09008 * 109.47255 * 59.99737 * 1 2 3 29 29 H 1.08003 * 119.80621 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.96916 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.99847 * 130.13600 * 7 6 5 32 32 H 1.08001 * 120.00795 * 169.72345 * 8 7 6 33 33 H 1.08991 * 109.47320 * 89.99382 * 12 11 9 34 34 H 1.08998 * 109.47473 * 210.00111 * 12 11 9 35 35 H 1.09004 * 109.46673 * 329.99273 * 12 11 9 36 36 H 1.09005 * 109.46763 * 209.99789 * 13 11 9 37 37 H 1.08995 * 109.47201 * 330.00176 * 13 11 9 38 38 H 0.97003 * 120.00017 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47265 * 179.97438 * 24 23 22 40 40 H 1.08995 * 109.46788 * 299.99871 * 24 23 22 41 41 H 1.08995 * 109.46920 * 59.99953 * 24 23 22 42 42 H 1.07996 * 120.03809 * 180.25557 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2840 2.3745 0.0005 5 6 1.8922 3.5971 0.0000 6 6 3.2898 3.6852 0.0056 7 6 3.9456 4.9978 0.0121 8 6 3.5762 5.9423 -0.8813 9 6 2.7184 5.6027 -1.9583 10 8 2.4140 4.4398 -2.1506 11 7 2.2401 6.5674 -2.7689 12 6 2.6067 7.9668 -2.5377 13 6 1.3534 6.2166 -3.8811 14 6 -0.0784 6.2515 -3.4124 15 1 -0.3052 6.5089 -2.3883 16 6 -1.0987 5.9539 -4.2907 17 7 -2.3482 5.9839 -3.8815 18 14 -0.7063 5.5081 -6.0617 19 1 -0.5173 4.0393 -6.1721 20 1 -1.8280 5.9302 -6.9386 21 1 0.5383 6.2003 -6.4823 22 6 4.0613 2.5103 -0.0003 23 8 5.4162 2.5837 -0.0006 24 6 6.1329 1.3474 -0.0008 25 6 3.4311 1.2781 -0.0003 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2058 2.3115 0.0014 30 1 1.2949 4.4968 0.0000 31 1 4.7236 5.2091 0.7308 32 1 3.9343 6.9557 -0.7752 33 1 3.5134 8.2017 -3.0952 34 1 1.7965 8.6148 -2.8721 35 1 2.7830 8.1252 -1.4738 36 1 1.4877 6.9322 -4.6924 37 1 1.5951 5.2149 -4.2364 38 1 -3.0661 5.7741 -4.4992 39 1 7.2042 1.5485 -0.0015 40 1 5.8708 0.7754 0.8892 41 1 5.8704 0.7755 -0.8907 42 1 4.0173 0.3711 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491237784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:09 Heat of formation + Delta-G solvation = -39.423326 kcal Electronic energy + Delta-G solvation = -25369.044552 eV Core-core repulsion = 21702.808354 eV Total energy + Delta-G solvation = -3666.236198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.39402 -39.18090 -38.78804 -36.45344 -34.78948 -33.17089 -32.44848 -30.29401 -29.53954 -28.33500 -27.18064 -26.91008 -25.81249 -23.89931 -22.24278 -21.65845 -20.39360 -18.61145 -17.83495 -17.02283 -16.89045 -16.51504 -15.93539 -15.79681 -15.52181 -15.39607 -14.78185 -14.62150 -14.30965 -13.87345 -13.61545 -13.18109 -12.99445 -12.66183 -12.42640 -12.30744 -12.25561 -12.13497 -11.95314 -11.81656 -11.46686 -11.39869 -11.11043 -10.92229 -10.75851 -10.48824 -10.40509 -10.12957 -9.51699 -9.21629 -8.92270 -8.56775 -8.20602 -7.54629 -7.32923 -6.07196 -4.04773 1.16266 1.79484 2.14808 3.23147 3.30575 3.36549 3.39177 3.49825 4.06188 4.09099 4.17337 4.41725 5.00552 5.01810 5.07716 5.13791 5.22363 5.23470 5.28482 5.31445 5.41411 5.41977 5.55984 5.59200 5.65501 5.74721 5.81335 5.93287 5.99244 6.20718 6.27684 6.37344 6.56161 6.67512 6.79854 6.83674 6.93589 7.06253 7.38641 7.45890 7.64119 7.65333 8.38092 8.50776 8.95866 9.13667 9.54476 11.06196 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.005056 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.440882 B = 5536.503909 C = 6937.850404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.170 3.830 4 C -0.239 4.239 5 C 0.038 3.962 6 C -0.124 4.124 7 C -0.007 4.007 8 C -0.220 4.220 9 C 0.532 3.468 10 O -0.531 6.531 11 N -0.597 5.597 12 C 0.084 3.916 13 C 0.215 3.785 14 C -0.523 4.523 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.174 3.826 23 O -0.311 6.311 24 C 0.028 3.972 25 C -0.255 4.255 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.402 -5.961 10.055 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.124 3.876 4 C -0.258 4.258 5 C 0.020 3.980 6 C -0.125 4.125 7 C -0.027 4.027 8 C -0.241 4.241 9 C 0.323 3.677 10 O -0.411 6.411 11 N -0.328 5.328 12 C -0.060 4.060 13 C 0.095 3.905 14 C -0.561 4.561 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.191 1.191 22 C 0.128 3.872 23 O -0.224 6.224 24 C -0.067 4.067 25 C -0.274 4.274 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.240 -6.605 9.845 17.772 hybrid contribution -0.291 -0.179 -1.145 1.195 sum 12.949 -6.784 8.699 17.011 Atomic orbital electron populations 1.23075 0.78122 1.03555 1.02079 1.85941 1.21668 1.27405 1.88404 1.18760 0.91405 0.83983 0.93441 1.20750 1.00180 0.92061 1.12794 1.20465 0.91993 0.97346 0.88225 1.18007 0.92354 0.90701 1.11452 1.22039 0.94347 0.90983 0.95346 1.22308 1.04025 1.00122 0.97596 1.17134 0.81232 0.85820 0.83523 1.90855 1.59585 1.18371 1.72277 1.47841 1.47521 1.06053 1.31391 1.21664 1.00159 0.83594 1.00611 1.19615 0.89710 0.96463 0.84762 1.21328 0.88590 1.47108 0.99118 0.90818 1.24839 0.94859 0.94778 0.98500 1.69899 0.98890 1.49428 1.35628 0.86867 0.78190 0.79556 0.85188 1.20010 1.21140 1.19089 1.18586 0.81711 0.92391 0.94468 1.86002 1.15561 1.32357 1.88506 1.23030 0.96485 0.85762 1.01470 1.20054 0.92442 0.96956 1.17968 0.88525 0.92525 0.92016 0.85413 0.85500 0.85423 0.85479 0.93858 0.90787 0.91971 0.95541 0.94594 0.92671 0.88490 0.92714 0.92625 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 16 2 O -0.32 -4.90 10.48 -18.88 -0.20 -5.10 16 3 C 0.17 2.86 6.69 -39.04 -0.26 2.60 16 4 C -0.24 -4.24 8.96 -39.84 -0.36 -4.59 16 5 C 0.04 0.71 6.76 -39.52 -0.27 0.44 16 6 C -0.12 -2.17 4.26 -104.92 -0.45 -2.61 16 7 C -0.01 -0.11 9.31 -37.25 -0.35 -0.46 16 8 C -0.22 -3.56 8.93 -39.31 -0.35 -3.91 16 9 C 0.53 11.20 6.74 -14.89 -0.10 11.10 16 10 O -0.53 -12.98 11.91 5.15 0.06 -12.92 16 11 N -0.60 -12.67 2.86 -186.33 -0.53 -13.21 16 12 C 0.08 1.33 10.08 59.85 0.60 1.94 16 13 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 14 C -0.52 -15.05 9.94 -34.44 -0.34 -15.39 16 15 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 18 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 19 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C 0.17 2.85 6.70 -38.64 -0.26 2.59 16 23 O -0.31 -4.43 9.95 -18.76 -0.19 -4.62 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 C -0.25 -4.05 8.97 -39.33 -0.35 -4.40 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.06 0.79 7.65 -51.92 -0.40 0.40 16 29 H 0.13 2.11 6.26 -52.48 -0.33 1.79 16 30 H 0.13 2.47 7.56 -52.49 -0.40 2.07 16 31 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.13 1.62 6.22 -52.49 -0.33 1.29 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.82 6.18 -51.93 -0.32 0.50 16 36 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 41 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 42 H 0.13 1.76 6.31 -52.49 -0.33 1.43 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -35.56 348.09 -5.84 -41.40 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.72 Total: 1.63 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.62 Total: -2.76 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.24 Total: -40.10 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.32 Total: -22.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.56 -5.84 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491237784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.977 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds