Wall clock time and date at job start Tue Mar 31 2020 10:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53003 * 112.84829 * 51.69609 * 3 2 1 5 5 C 1.53780 * 113.61576 * 280.49491 * 3 2 1 6 6 C 1.53783 * 87.08251 * 270.88769 * 5 3 2 7 7 H 1.08998 * 113.60909 * 220.02353 * 6 5 3 8 8 N 1.46495 * 113.61748 * 89.11730 * 6 5 3 9 9 S 1.65594 * 120.00136 * 114.50362 * 8 6 5 10 10 O 1.42098 * 104.27836 * 181.07199 * 9 8 6 11 11 O 1.42104 * 104.27924 * 308.93089 * 9 8 6 12 12 C 1.81403 * 104.44963 * 64.99980 * 9 8 6 13 13 C 1.53000 * 109.47131 * 180.02562 * 12 9 8 14 14 C 1.50695 * 109.46979 * 180.02562 * 13 12 9 15 15 H 1.08003 * 120.00329 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99915 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00183 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47185 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46860 * 120.00399 * 18 16 14 21 21 H 1.48495 * 109.47497 * 240.00513 * 18 16 14 22 22 C 1.53784 * 113.61286 * 182.99729 * 3 2 1 23 23 C 1.53001 * 113.61274 * 203.66487 * 22 3 2 24 24 C 1.53000 * 113.61715 * 334.57127 * 22 3 2 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 28 28 H 1.08998 * 109.46976 * 69.66340 * 4 3 2 29 29 H 1.08993 * 109.46871 * 189.66646 * 4 3 2 30 30 H 1.09002 * 109.46673 * 309.66478 * 4 3 2 31 31 H 1.09003 * 113.61315 * 25.43402 * 5 3 2 32 32 H 1.08995 * 113.61204 * 156.25156 * 5 3 2 33 33 H 0.97001 * 119.99617 * 294.50904 * 8 6 5 34 34 H 1.09001 * 109.47054 * 300.00084 * 12 9 8 35 35 H 1.08999 * 109.46689 * 60.00100 * 12 9 8 36 36 H 1.09001 * 109.47015 * 299.99857 * 13 12 9 37 37 H 1.08995 * 109.47511 * 59.99818 * 13 12 9 38 38 H 0.97005 * 120.00582 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.46684 * 60.00791 * 23 22 3 40 40 H 1.09007 * 109.46798 * 179.97438 * 23 22 3 41 41 H 1.08993 * 109.47449 * 300.00252 * 23 22 3 42 42 H 1.09001 * 109.47050 * 59.99776 * 24 22 3 43 43 H 1.08995 * 109.47514 * 179.97438 * 24 22 3 44 44 H 1.08997 * 109.46821 * 300.00149 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4534 2.2037 1.1065 5 6 2.0263 1.9727 -1.3854 6 6 3.3944 1.3054 -1.6040 7 1 4.1166 1.9459 -2.1104 8 7 3.3073 -0.0329 -2.1934 9 16 3.9147 -0.3115 -3.7085 10 8 3.6342 -1.6832 -3.9517 11 8 3.3358 0.7082 -4.5112 12 6 5.7011 -0.0481 -3.5354 13 6 6.3837 -0.2781 -4.8853 14 6 7.8678 -0.0599 -4.7414 15 1 8.2828 0.2149 -3.7829 16 6 8.6961 -0.2121 -5.8331 17 7 8.1909 -0.5472 -7.0001 18 14 10.5357 0.0591 -5.6549 19 1 10.8482 0.4262 -4.2502 20 1 11.2568 -1.1889 -6.0121 21 1 10.9646 1.1551 -6.5604 22 6 3.5462 1.2960 -0.0737 23 6 4.1945 2.5639 0.4858 24 6 4.1781 0.0136 0.4716 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7996 1.8437 2.0753 29 1 1.7999 3.2257 0.9535 30 1 0.3640 2.1814 1.0787 31 1 1.2493 1.6054 -2.0560 32 1 2.0711 3.0610 -1.3454 33 1 2.8936 -0.7558 -1.6962 34 1 5.8873 0.9734 -3.2039 35 1 6.1020 -0.7472 -2.8014 36 1 6.1975 -1.2995 -5.2172 37 1 5.9828 0.4211 -5.6190 38 1 8.7735 -0.6539 -7.7683 39 1 3.9199 2.6800 1.5343 40 1 5.2784 2.4855 0.4010 41 1 3.8472 3.4291 -0.0788 42 1 3.8196 -0.8407 -0.1027 43 1 5.2628 0.0785 0.3868 44 1 3.9019 -0.1107 1.5186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074975708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:31 Heat of formation + Delta-G solvation = -105.902435 kcal Electronic energy + Delta-G solvation = -24740.386022 eV Core-core repulsion = 21206.711025 eV Total energy + Delta-G solvation = -3533.674997 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01626 -36.72099 -36.43815 -35.35974 -33.86378 -33.29120 -31.13628 -30.80816 -28.94472 -27.72216 -26.65790 -25.56879 -22.85896 -22.09525 -21.62028 -18.97238 -18.69488 -17.45111 -16.53094 -16.14189 -15.90929 -15.78354 -15.38120 -15.30836 -14.85418 -14.52807 -14.07540 -13.91757 -13.37918 -13.32718 -13.14453 -12.64216 -12.54066 -12.50249 -12.16348 -12.01243 -11.80687 -11.71259 -11.56956 -11.55555 -11.46765 -11.38141 -11.08074 -10.98719 -10.92303 -10.77625 -10.35702 -10.35521 -10.03495 -9.74313 -9.49451 -9.35447 -8.92982 -8.48816 -6.10572 -4.15868 0.86527 3.14765 3.26429 3.33660 3.37021 3.46008 4.17032 4.26251 4.32680 4.40914 4.61575 4.68143 4.81100 5.01696 5.07143 5.13295 5.15789 5.20901 5.23354 5.24798 5.36989 5.45504 5.52387 5.54219 5.59440 5.70657 5.74548 5.76207 5.81009 5.85187 5.93040 5.97072 6.11656 6.32435 6.39722 6.53209 7.08665 7.29675 7.33429 7.40026 7.82736 8.20032 8.87833 9.48783 11.00542 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.003916 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.255173 B = 7148.997918 C = 7826.088599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.095 3.905 4 C -0.168 4.168 5 C -0.176 4.176 6 C 0.145 3.855 7 H 0.102 0.898 8 N -1.102 6.102 9 S 2.591 3.409 10 O -0.968 6.968 11 O -0.967 6.967 12 C -0.589 4.589 13 C 0.027 3.973 14 C -0.518 4.518 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.418 0.582 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 5.975 18.356 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.277 6.277 3 C 0.055 3.945 4 C -0.225 4.225 5 C -0.215 4.215 6 C 0.036 3.964 7 H 0.120 0.880 8 N -0.859 5.859 9 S 2.689 3.311 10 O -0.958 6.958 11 O -0.957 6.957 12 C -0.723 4.723 13 C -0.012 4.012 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.078 4.078 23 C -0.186 4.186 24 C -0.189 4.189 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.255 0.745 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.555 5.648 17.304 22.695 hybrid contribution 1.046 0.185 0.618 1.229 sum -12.509 5.832 17.921 22.620 Atomic orbital electron populations 1.22761 0.81383 1.02667 1.00106 1.87871 1.19397 1.25784 1.94617 1.22579 0.93919 0.83763 0.94267 1.22214 1.01262 1.00069 0.98930 1.24054 0.99346 1.00667 0.97478 1.21520 0.97408 0.83784 0.93677 0.88045 1.55643 1.75751 1.16408 1.38058 1.05587 0.78744 0.74083 0.72708 1.93551 1.84724 1.34294 1.83272 1.93543 1.75664 1.59883 1.66603 1.30456 1.20872 1.10266 1.10674 1.18964 0.96914 0.98548 0.86737 1.21044 0.90764 1.48046 0.95925 0.91989 1.25070 0.99266 0.94968 0.95214 1.69964 1.35581 1.47069 1.00259 0.86424 0.84775 0.77921 0.78220 1.19647 1.20822 1.20823 1.22330 0.92547 0.97487 0.95465 1.21643 1.00949 0.95031 1.01000 1.21558 1.00156 0.96467 1.00709 0.93911 0.89622 0.93834 0.91831 0.90940 0.92225 0.90053 0.88409 0.74527 0.86411 0.86061 0.94878 0.94867 0.92612 0.91710 0.91286 0.91881 0.91384 0.92298 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.41 101.05 1.05 1.28 16 2 O -0.36 -3.84 8.19 -35.23 -0.29 -4.13 16 3 C 0.09 0.91 1.06 -89.80 -0.10 0.81 16 4 C -0.17 -1.24 7.79 37.16 0.29 -0.95 16 5 C -0.18 -1.87 6.75 -25.92 -0.17 -2.05 16 6 C 0.15 1.75 3.73 -67.12 -0.25 1.50 16 7 H 0.10 1.18 7.63 -51.93 -0.40 0.78 16 8 N -1.10 -15.49 4.82 -4.20 -0.02 -15.51 16 9 S 2.59 47.82 5.41 -107.50 -0.58 47.24 16 10 O -0.97 -20.83 18.08 -57.54 -1.04 -21.87 16 11 O -0.97 -20.47 17.82 -57.54 -1.03 -21.50 16 12 C -0.59 -11.38 6.01 37.16 0.22 -11.16 16 13 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 14 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.08 -0.75 1.26 -153.69 -0.19 -0.94 16 23 C -0.13 -1.00 7.86 37.16 0.29 -0.71 16 24 C -0.13 -1.35 8.48 37.16 0.31 -1.04 16 25 H 0.04 0.36 7.61 -51.93 -0.40 -0.03 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.30 6.39 -51.93 -0.33 -0.03 16 28 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 30 H 0.06 0.41 6.28 -51.93 -0.33 0.08 16 31 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 32 H 0.10 0.85 7.50 -51.93 -0.39 0.46 16 33 H 0.42 5.56 6.04 -34.47 -0.21 5.35 16 34 H 0.12 2.01 7.75 -51.92 -0.40 1.60 16 35 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 0.43 7.36 -51.93 -0.38 0.05 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.06 0.44 7.25 -51.93 -0.38 0.06 16 42 H 0.07 0.77 5.74 -51.93 -0.30 0.47 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -34.94 356.84 -8.15 -43.09 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.20 Total: 2.81 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 0.91 Total: -25.84 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.72 Total: -41.40 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.35 Total: -47.50 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.82 SS G_CDS: -0.58 Total: 47.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.94 -8.15 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074975708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.812 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds