Wall clock time and date at job start Tue Mar 31 2020 10:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53003 * 112.84829 * 51.69609 * 3 2 1 5 5 C 1.53780 * 113.61576 * 280.49491 * 3 2 1 6 6 C 1.53783 * 87.08251 * 270.88769 * 5 3 2 7 7 H 1.08998 * 113.60909 * 220.02353 * 6 5 3 8 8 N 1.46495 * 113.61748 * 89.11730 * 6 5 3 9 9 S 1.65594 * 120.00136 * 114.50362 * 8 6 5 10 10 O 1.42098 * 104.27836 * 181.07199 * 9 8 6 11 11 O 1.42104 * 104.27924 * 308.93089 * 9 8 6 12 12 C 1.81403 * 104.44963 * 64.99980 * 9 8 6 13 13 C 1.53000 * 109.47131 * 180.02562 * 12 9 8 14 14 C 1.50695 * 109.46979 * 180.02562 * 13 12 9 15 15 H 1.08003 * 120.00329 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99915 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00183 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47185 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46860 * 120.00399 * 18 16 14 21 21 H 1.48495 * 109.47497 * 240.00513 * 18 16 14 22 22 C 1.53784 * 113.61286 * 182.99729 * 3 2 1 23 23 C 1.53001 * 113.61274 * 203.66487 * 22 3 2 24 24 C 1.53000 * 113.61715 * 334.57127 * 22 3 2 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 28 28 H 1.08998 * 109.46976 * 69.66340 * 4 3 2 29 29 H 1.08993 * 109.46871 * 189.66646 * 4 3 2 30 30 H 1.09002 * 109.46673 * 309.66478 * 4 3 2 31 31 H 1.09003 * 113.61315 * 25.43402 * 5 3 2 32 32 H 1.08995 * 113.61204 * 156.25156 * 5 3 2 33 33 H 0.97001 * 119.99617 * 294.50904 * 8 6 5 34 34 H 1.09001 * 109.47054 * 300.00084 * 12 9 8 35 35 H 1.08999 * 109.46689 * 60.00100 * 12 9 8 36 36 H 1.09001 * 109.47015 * 299.99857 * 13 12 9 37 37 H 1.08995 * 109.47511 * 59.99818 * 13 12 9 38 38 H 0.97005 * 120.00582 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.46684 * 60.00791 * 23 22 3 40 40 H 1.09007 * 109.46798 * 179.97438 * 23 22 3 41 41 H 1.08993 * 109.47449 * 300.00252 * 23 22 3 42 42 H 1.09001 * 109.47050 * 59.99776 * 24 22 3 43 43 H 1.08995 * 109.47514 * 179.97438 * 24 22 3 44 44 H 1.08997 * 109.46821 * 300.00149 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4534 2.2037 1.1065 5 6 2.0263 1.9727 -1.3854 6 6 3.3944 1.3054 -1.6040 7 1 4.1166 1.9459 -2.1104 8 7 3.3073 -0.0329 -2.1934 9 16 3.9147 -0.3115 -3.7085 10 8 3.6342 -1.6832 -3.9517 11 8 3.3358 0.7082 -4.5112 12 6 5.7011 -0.0481 -3.5354 13 6 6.3837 -0.2781 -4.8853 14 6 7.8678 -0.0599 -4.7414 15 1 8.2828 0.2149 -3.7829 16 6 8.6961 -0.2121 -5.8331 17 7 8.1909 -0.5472 -7.0001 18 14 10.5357 0.0591 -5.6549 19 1 10.8482 0.4262 -4.2502 20 1 11.2568 -1.1889 -6.0121 21 1 10.9646 1.1551 -6.5604 22 6 3.5462 1.2960 -0.0737 23 6 4.1945 2.5639 0.4858 24 6 4.1781 0.0136 0.4716 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7996 1.8437 2.0753 29 1 1.7999 3.2257 0.9535 30 1 0.3640 2.1814 1.0787 31 1 1.2493 1.6054 -2.0560 32 1 2.0711 3.0610 -1.3454 33 1 2.8936 -0.7558 -1.6962 34 1 5.8873 0.9734 -3.2039 35 1 6.1020 -0.7472 -2.8014 36 1 6.1975 -1.2995 -5.2172 37 1 5.9828 0.4211 -5.6190 38 1 8.7735 -0.6539 -7.7683 39 1 3.9199 2.6800 1.5343 40 1 5.2784 2.4855 0.4010 41 1 3.8472 3.4291 -0.0788 42 1 3.8196 -0.8407 -0.1027 43 1 5.2628 0.0785 0.3868 44 1 3.9019 -0.1107 1.5186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074975708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:30 Heat of formation + Delta-G solvation = -131.537345 kcal Electronic energy + Delta-G solvation = -24741.497635 eV Core-core repulsion = 21206.711025 eV Total energy + Delta-G solvation = -3534.786610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80440 -38.14957 -37.43527 -37.00262 -35.88911 -34.33125 -33.12195 -31.54930 -29.69512 -28.38344 -27.58287 -27.33822 -23.74918 -23.58882 -22.83065 -20.34553 -19.57620 -19.11240 -18.28108 -17.29000 -17.04135 -16.64651 -16.56080 -16.49847 -16.21526 -16.13912 -15.14978 -14.85805 -14.76233 -14.46347 -14.05223 -13.88465 -13.71028 -13.33366 -13.22159 -13.17884 -13.12117 -13.04578 -12.94425 -12.79790 -12.72610 -12.57782 -12.45549 -12.28258 -12.25059 -12.09587 -11.78206 -11.70235 -11.54334 -11.09787 -10.78371 -10.64739 -10.23299 -10.19449 -8.25011 -6.38983 -0.67058 1.41961 1.42670 1.56019 1.83460 2.39011 2.72999 2.80349 3.08601 3.26773 3.42394 3.54662 3.79811 3.96553 3.98899 4.10379 4.26878 4.31701 4.39038 4.52027 4.56008 4.60218 4.67641 4.76294 4.82694 4.86615 4.92111 4.97147 5.01620 5.11013 5.14773 5.23562 5.26749 5.27853 5.29620 5.31730 5.56191 5.61880 5.69531 6.06967 6.18798 6.39404 6.74903 7.31240 8.87611 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.003916 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.255173 B = 7148.997918 C = 7826.088599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.095 3.905 4 C -0.164 4.164 5 C -0.177 4.177 6 C 0.119 3.881 7 H 0.106 0.894 8 N -1.085 6.085 9 S 2.616 3.384 10 O -1.003 7.003 11 O -0.996 6.996 12 C -0.584 4.584 13 C 0.020 3.980 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.068 4.068 23 C -0.128 4.128 24 C -0.134 4.134 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.424 0.576 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.004 0.996 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 7.453 21.063 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.055 3.945 4 C -0.221 4.221 5 C -0.217 4.217 6 C 0.011 3.989 7 H 0.124 0.876 8 N -0.845 5.845 9 S 2.713 3.287 10 O -0.993 6.993 11 O -0.986 6.986 12 C -0.716 4.716 13 C -0.019 4.019 14 C -0.575 4.575 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.178 1.178 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.070 4.070 23 C -0.186 4.186 24 C -0.192 4.192 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.262 0.738 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.961 7.128 20.027 24.898 hybrid contribution 0.771 -0.277 -0.197 0.842 sum -12.191 6.851 19.830 24.265 Atomic orbital electron populations 1.22889 0.80447 1.03339 1.00701 1.87838 1.20545 1.26692 1.94712 1.22640 0.93854 0.83673 0.94322 1.22197 1.01576 1.00231 0.98057 1.24134 0.97632 1.01960 0.97958 1.21971 0.98873 0.82516 0.95526 0.87643 1.55159 1.74973 1.17862 1.36549 1.04561 0.78123 0.72679 0.73298 1.93495 1.85082 1.36225 1.84487 1.93501 1.76079 1.60595 1.68395 1.30321 1.21250 1.12546 1.07526 1.18829 0.97292 0.96142 0.89627 1.21539 0.91778 1.47562 0.96620 0.90464 1.26128 1.04851 0.94530 0.94779 1.70112 1.37672 1.48398 1.01316 0.85252 0.78029 0.77834 0.79050 1.17782 1.20512 1.20340 1.22354 0.93054 0.98347 0.93241 1.21691 1.00832 0.94073 1.01992 1.21577 1.00299 0.96250 1.01045 0.94356 0.89062 0.92144 0.91352 0.89488 0.91712 0.91841 0.86194 0.73780 0.83799 0.83997 0.97767 0.97461 0.92427 0.90114 0.91232 0.90842 0.92808 0.92075 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.41 113.37 1.18 1.53 16 2 O -0.38 -7.59 8.19 -148.98 -1.22 -8.81 16 3 C 0.09 1.61 1.06 -10.27 -0.01 1.60 16 4 C -0.16 -1.89 7.79 71.98 0.56 -1.33 16 5 C -0.18 -3.47 6.75 31.12 0.21 -3.26 16 6 C 0.12 2.69 3.73 45.52 0.17 2.86 16 7 H 0.11 2.27 7.63 -2.39 -0.02 2.25 16 8 N -1.08 -29.97 4.82 -167.19 -0.81 -30.77 16 9 S 2.62 97.97 5.41 -56.49 -0.31 97.66 16 10 O -1.00 -44.33 18.08 -127.65 -2.31 -46.64 16 11 O -1.00 -43.01 17.82 -127.65 -2.27 -45.29 16 12 C -0.58 -22.41 6.01 71.98 0.43 -21.98 16 13 C 0.02 1.06 4.98 29.85 0.15 1.21 16 14 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 17 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 18 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 19 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 C -0.07 -1.17 1.26 -51.65 -0.07 -1.24 16 23 C -0.13 -1.57 7.86 71.98 0.57 -1.00 16 24 C -0.13 -2.51 8.48 71.98 0.61 -1.90 16 25 H 0.04 0.62 7.61 -2.39 -0.02 0.60 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 0.72 6.39 -2.39 -0.02 0.70 16 28 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.09 0.76 7.08 -2.39 -0.02 0.75 16 30 H 0.06 0.69 6.28 -2.39 -0.01 0.68 16 31 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 32 H 0.12 1.77 7.50 -2.39 -0.02 1.75 16 33 H 0.42 11.13 6.04 -96.75 -0.58 10.54 16 34 H 0.14 4.71 7.75 -2.39 -0.02 4.69 16 35 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 36 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.08 0.76 7.36 -2.39 -0.02 0.74 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 0.75 7.25 -2.39 -0.02 0.74 16 42 H 0.05 1.15 5.74 -2.39 -0.01 1.13 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -76.47 356.84 0.29 -76.18 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.40 Total: 22.18 kcal Atomic # 6 Polarization: -57.33 SS G_CDS: 4.50 Total: -52.84 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.52 Total: -87.76 kcal Atomic # 8 Polarization: -94.93 SS G_CDS: -5.80 Total: -100.73 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 97.97 SS G_CDS: -0.31 Total: 97.66 kcal Total: -76.47 0.29 -76.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074975708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.360 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds