Wall clock time and date at job start Tue Mar 31 2020 11:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38844 * 120.75168 * 2 1 4 4 C 1.38097 * 119.31876 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.57293 * 180.02562 * 4 3 2 6 6 N 1.31921 * 120.85039 * 359.73056 * 4 3 2 7 7 C 1.32378 * 121.63662 * 0.56087 * 6 4 3 8 8 N 1.39237 * 119.70059 * 179.71448 * 7 6 4 9 9 C 1.34776 * 120.00154 * 4.78334 * 8 7 6 10 10 O 1.21362 * 120.00036 * 354.94970 * 9 8 7 11 11 C 1.49370 * 120.00049 * 174.95226 * 9 8 7 12 12 O 1.21352 * 120.00204 * 5.92073 * 11 9 8 13 13 N 1.34775 * 119.99818 * 185.91155 * 11 9 8 14 14 C 1.46500 * 120.00390 * 356.43244 * 13 11 9 15 15 C 1.46506 * 119.99963 * 176.42077 * 13 11 9 16 16 H 1.09000 * 109.46974 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46752 * 120.00770 * 15 13 11 18 18 C 1.50697 * 109.47315 * 240.00671 * 15 13 11 19 19 H 1.07996 * 120.00254 * 359.97438 * 18 15 13 20 20 C 1.37881 * 119.99836 * 180.02562 * 18 15 13 21 21 N 1.31507 * 119.99823 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99899 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.46823 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46922 * 299.99428 * 22 20 18 25 25 H 1.48496 * 109.47475 * 59.99527 * 22 20 18 26 26 C 1.38358 * 120.75512 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47133 * 269.97573 * 1 2 3 28 28 H 1.08998 * 109.47587 * 29.97389 * 1 2 3 29 29 H 1.09005 * 109.47166 * 149.97871 * 1 2 3 30 30 H 1.08000 * 120.33784 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.46752 * 90.00379 * 5 4 3 32 32 H 1.09001 * 109.46989 * 210.00588 * 5 4 3 33 33 H 1.08999 * 109.47067 * 330.00114 * 5 4 3 34 34 H 0.96999 * 120.00302 * 184.77983 * 8 7 6 35 35 H 1.09001 * 109.46567 * 275.97797 * 14 13 11 36 36 H 1.08997 * 109.46893 * 35.97036 * 14 13 11 37 37 H 1.08997 * 109.47914 * 155.97548 * 14 13 11 38 38 H 1.09007 * 109.47039 * 299.99953 * 17 15 13 39 39 H 1.08992 * 109.47117 * 60.00240 * 17 15 13 40 40 H 1.08996 * 109.46912 * 180.02562 * 17 15 13 41 41 H 0.96999 * 119.99805 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.44994 * 359.95443 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5974 1.1587 -0.0005 5 6 4.3737 2.4503 0.0000 6 7 4.2454 0.0096 0.0043 7 6 3.6048 -1.1488 -0.0013 8 7 4.3293 -2.3379 -0.0019 9 6 5.6728 -2.3084 0.1005 10 8 6.2582 -1.2453 0.1008 11 6 6.4414 -3.5842 0.2134 12 8 5.8692 -4.6489 0.1053 13 7 7.7704 -3.5529 0.4352 14 6 8.4743 -2.2692 0.4877 15 6 8.5112 -4.8027 0.6241 16 1 7.8248 -5.6463 0.5518 17 6 9.5867 -4.9264 -0.4570 18 6 9.1628 -4.7999 1.9829 19 1 9.0381 -3.9519 2.6399 20 6 9.9192 -5.8797 2.3869 21 7 10.0714 -6.9120 1.5867 22 14 10.7263 -5.8766 4.0715 23 1 11.4772 -7.1433 4.2628 24 1 11.6610 -4.7268 4.1704 25 1 9.6822 -5.7574 5.1206 26 6 2.2145 -1.1890 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6948 2.1386 0.0004 31 1 4.5613 2.7610 1.0279 32 1 5.3235 2.3037 -0.5143 33 1 3.7979 3.2206 -0.5130 34 1 3.8671 -3.1874 -0.0759 35 1 8.7259 -1.9512 -0.5241 36 1 7.8326 -1.5218 0.9543 37 1 9.3880 -2.3792 1.0717 38 1 9.1153 -4.9284 -1.4399 39 1 10.2730 -4.0828 -0.3849 40 1 10.1375 -5.8564 -0.3168 41 1 10.6032 -7.6718 1.8710 42 1 1.6943 -2.1354 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194088198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:26 Heat of formation + Delta-G solvation = -13.044843 kcal Electronic energy + Delta-G solvation = -24814.780388 eV Core-core repulsion = 21181.980798 eV Total energy + Delta-G solvation = -3632.799590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04446 -39.83476 -37.95752 -35.95314 -34.92307 -34.26953 -32.77031 -31.43069 -29.50895 -28.23184 -27.51982 -26.26065 -25.30565 -24.90661 -22.47472 -21.86091 -20.35203 -19.21656 -17.54477 -17.21725 -16.43592 -16.15346 -15.98315 -15.84098 -15.62374 -14.93772 -14.75256 -14.34607 -13.86699 -13.69099 -13.51450 -13.21320 -12.97939 -12.74993 -12.58895 -12.40584 -12.36552 -12.32273 -11.95735 -11.68999 -11.62432 -11.10978 -10.88255 -10.77012 -10.71843 -10.46595 -10.30322 -10.20416 -9.57438 -9.55001 -9.23914 -8.61965 -8.44939 -8.31938 -7.72594 -6.12136 -4.20659 0.91614 1.15130 2.02790 2.56283 3.27331 3.31883 3.34365 3.57011 3.80760 3.90884 4.28390 4.38106 4.42990 4.72594 4.87021 4.93743 4.98956 5.18948 5.19585 5.23762 5.40195 5.43380 5.51343 5.59667 5.77603 5.93234 6.06330 6.12921 6.20818 6.26568 6.56810 6.66165 6.74511 6.78706 6.97199 7.04022 7.23894 7.39275 7.65213 7.81300 7.96273 8.09227 8.19485 8.36047 8.60943 8.85120 9.45496 10.93313 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003118 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.656273 B = 8978.657879 C = 9226.981260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 C -0.211 4.211 4 C 0.163 3.837 5 C -0.103 4.103 6 N -0.481 5.481 7 C 0.375 3.625 8 N -0.642 5.642 9 C 0.499 3.501 10 O -0.447 6.447 11 C 0.494 3.506 12 O -0.540 6.540 13 N -0.550 5.550 14 C 0.069 3.931 15 C 0.255 3.745 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.887 5.887 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.216 4.216 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.428 0.572 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.013 0.987 39 H 0.033 0.967 40 H 0.096 0.904 41 H 0.265 0.735 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 15.252 -4.029 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.022 4.022 3 C -0.232 4.232 4 C 0.024 3.976 5 C -0.160 4.160 6 N -0.198 5.198 7 C 0.144 3.856 8 N -0.290 5.290 9 C 0.281 3.719 10 O -0.315 6.315 11 C 0.274 3.726 12 O -0.419 6.419 13 N -0.280 5.280 14 C -0.074 4.074 15 C 0.156 3.844 16 H 0.084 0.916 17 C -0.205 4.205 18 C -0.569 4.569 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.729 3.271 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.239 4.239 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.267 0.733 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.655 15.182 -4.066 21.489 hybrid contribution -0.611 -0.539 0.882 1.201 sum -15.266 14.643 -3.184 21.392 Atomic orbital electron populations 1.20811 0.90059 1.03308 1.02934 1.20038 0.96501 0.92179 0.93477 1.21714 0.94680 0.98535 1.08295 1.21168 0.90882 0.93345 0.92171 1.20714 1.00558 0.91537 1.03196 1.67492 1.39554 0.96511 1.16227 1.18410 0.87764 0.86218 0.93247 1.43403 1.07176 1.07859 1.70609 1.21032 0.82312 0.91124 0.77475 1.90738 1.67210 1.31849 1.41686 1.19654 0.84045 0.88048 0.80833 1.90706 1.68872 1.30742 1.51594 1.48269 1.05529 1.10569 1.63655 1.22188 0.98912 0.84832 1.01500 1.19166 0.90226 0.80300 0.94730 0.91591 1.22089 0.99552 1.03478 0.95377 1.21257 1.31668 1.03880 1.00066 0.92017 1.24881 0.96017 0.95089 0.97630 1.69864 1.39803 1.06733 1.36059 0.86500 0.79392 0.77373 0.83830 1.21108 1.20100 1.20178 1.21327 0.92336 0.99684 1.10595 0.90430 0.90969 0.90953 0.84986 0.90300 0.90090 0.90803 0.73325 0.93420 0.89261 0.90445 0.96802 0.94805 0.88520 0.92494 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.06 36.00 0.36 -0.34 16 2 C -0.01 -0.13 5.91 -104.36 -0.62 -0.75 16 3 C -0.21 -2.09 9.44 -39.41 -0.37 -2.46 16 4 C 0.16 2.01 6.78 -82.61 -0.56 1.45 16 5 C -0.10 -0.97 10.17 36.01 0.37 -0.60 16 6 N -0.48 -7.55 7.80 -8.62 -0.07 -7.62 16 7 C 0.38 5.45 7.42 -154.83 -1.15 4.30 16 8 N -0.64 -9.86 5.38 -11.86 -0.06 -9.93 16 9 C 0.50 9.27 7.73 -11.62 -0.09 9.18 16 10 O -0.45 -8.74 11.40 5.49 0.06 -8.68 16 11 C 0.49 10.60 7.73 -11.62 -0.09 10.51 16 12 O -0.54 -12.55 15.82 5.50 0.09 -12.47 16 13 N -0.55 -12.39 2.75 -175.80 -0.48 -12.88 16 14 C 0.07 1.34 8.49 59.85 0.51 1.85 16 15 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 16 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 17 C -0.15 -3.54 8.97 37.16 0.33 -3.20 16 18 C -0.53 -14.37 7.95 -34.44 -0.27 -14.64 16 19 H 0.06 1.66 7.43 -52.49 -0.39 1.27 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 21 N -0.89 -24.81 11.32 55.43 0.63 -24.19 16 22 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.22 -2.41 9.64 -39.22 -0.38 -2.79 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 29 H 0.07 0.39 8.10 -51.93 -0.42 -0.04 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.43 5.65 8.18 -40.82 -0.33 5.31 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.71 5.36 -51.94 -0.28 1.44 16 37 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 38 H 0.01 0.30 8.14 -51.92 -0.42 -0.13 16 39 H 0.03 0.76 7.67 -51.93 -0.40 0.36 16 40 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -32.13 351.68 -7.59 -39.73 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.80 Total: 4.15 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -2.24 Total: 10.60 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.01 Total: -54.61 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.15 Total: -21.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.13 -7.59 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.683 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds