Wall clock time and date at job start Tue Mar 31 2020 11:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38844 * 120.75168 * 2 1 4 4 C 1.38097 * 119.31876 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.57293 * 180.02562 * 4 3 2 6 6 N 1.31921 * 120.85039 * 359.73056 * 4 3 2 7 7 C 1.32378 * 121.63662 * 0.56087 * 6 4 3 8 8 N 1.39237 * 119.70059 * 179.71448 * 7 6 4 9 9 C 1.34776 * 120.00154 * 4.78334 * 8 7 6 10 10 O 1.21362 * 120.00036 * 354.94970 * 9 8 7 11 11 C 1.49370 * 120.00049 * 174.95226 * 9 8 7 12 12 O 1.21352 * 120.00204 * 5.92073 * 11 9 8 13 13 N 1.34775 * 119.99818 * 185.91155 * 11 9 8 14 14 C 1.46500 * 120.00390 * 356.43244 * 13 11 9 15 15 C 1.46506 * 119.99963 * 176.42077 * 13 11 9 16 16 H 1.09000 * 109.46974 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46752 * 120.00770 * 15 13 11 18 18 C 1.50697 * 109.47315 * 240.00671 * 15 13 11 19 19 H 1.07996 * 120.00254 * 359.97438 * 18 15 13 20 20 C 1.37881 * 119.99836 * 180.02562 * 18 15 13 21 21 N 1.31507 * 119.99823 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99899 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.46823 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46922 * 299.99428 * 22 20 18 25 25 H 1.48496 * 109.47475 * 59.99527 * 22 20 18 26 26 C 1.38358 * 120.75512 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47133 * 269.97573 * 1 2 3 28 28 H 1.08998 * 109.47587 * 29.97389 * 1 2 3 29 29 H 1.09005 * 109.47166 * 149.97871 * 1 2 3 30 30 H 1.08000 * 120.33784 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.46752 * 90.00379 * 5 4 3 32 32 H 1.09001 * 109.46989 * 210.00588 * 5 4 3 33 33 H 1.08999 * 109.47067 * 330.00114 * 5 4 3 34 34 H 0.96999 * 120.00302 * 184.77983 * 8 7 6 35 35 H 1.09001 * 109.46567 * 275.97797 * 14 13 11 36 36 H 1.08997 * 109.46893 * 35.97036 * 14 13 11 37 37 H 1.08997 * 109.47914 * 155.97548 * 14 13 11 38 38 H 1.09007 * 109.47039 * 299.99953 * 17 15 13 39 39 H 1.08992 * 109.47117 * 60.00240 * 17 15 13 40 40 H 1.08996 * 109.46912 * 180.02562 * 17 15 13 41 41 H 0.96999 * 119.99805 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.44994 * 359.95443 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5974 1.1587 -0.0005 5 6 4.3737 2.4503 0.0000 6 7 4.2454 0.0096 0.0043 7 6 3.6048 -1.1488 -0.0013 8 7 4.3293 -2.3379 -0.0019 9 6 5.6728 -2.3084 0.1005 10 8 6.2582 -1.2453 0.1008 11 6 6.4414 -3.5842 0.2134 12 8 5.8692 -4.6489 0.1053 13 7 7.7704 -3.5529 0.4352 14 6 8.4743 -2.2692 0.4877 15 6 8.5112 -4.8027 0.6241 16 1 7.8248 -5.6463 0.5518 17 6 9.5867 -4.9264 -0.4570 18 6 9.1628 -4.7999 1.9829 19 1 9.0381 -3.9519 2.6399 20 6 9.9192 -5.8797 2.3869 21 7 10.0714 -6.9120 1.5867 22 14 10.7263 -5.8766 4.0715 23 1 11.4772 -7.1433 4.2628 24 1 11.6610 -4.7268 4.1704 25 1 9.6822 -5.7574 5.1206 26 6 2.2145 -1.1890 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6948 2.1386 0.0004 31 1 4.5613 2.7610 1.0279 32 1 5.3235 2.3037 -0.5143 33 1 3.7979 3.2206 -0.5130 34 1 3.8671 -3.1874 -0.0759 35 1 8.7259 -1.9512 -0.5241 36 1 7.8326 -1.5218 0.9543 37 1 9.3880 -2.3792 1.0717 38 1 9.1153 -4.9284 -1.4399 39 1 10.2730 -4.0828 -0.3849 40 1 10.1375 -5.8564 -0.3168 41 1 10.6032 -7.6718 1.8710 42 1 1.6943 -2.1354 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194088198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:07 Heat of formation + Delta-G solvation = -33.065347 kcal Electronic energy + Delta-G solvation = -24815.648542 eV Core-core repulsion = 21181.980798 eV Total energy + Delta-G solvation = -3633.667744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 9.18 seconds Orbital eigenvalues (eV) -42.27096 -41.12423 -39.48764 -37.62790 -36.32461 -35.03608 -34.72741 -32.41897 -31.46994 -29.02883 -28.24784 -27.85691 -27.35767 -26.38796 -23.75046 -22.96901 -21.73624 -20.68169 -19.01077 -18.58362 -18.30258 -17.62809 -17.18510 -17.06285 -16.82547 -16.65992 -15.99887 -15.89512 -15.10526 -14.93867 -14.63464 -14.42855 -14.07463 -14.03512 -13.65575 -13.62504 -13.46706 -13.37817 -13.26761 -13.06202 -13.01937 -12.77789 -12.74025 -12.50896 -12.29002 -12.24899 -12.12337 -11.61507 -11.26350 -10.77384 -10.55766 -10.38570 -9.97793 -9.56876 -9.27337 -8.18961 -6.35766 -0.13794 0.29852 0.64596 1.18916 1.42446 1.43870 1.51984 2.11256 2.35015 2.49134 2.83874 3.09188 3.13958 3.49513 3.73596 3.96723 4.15864 4.23602 4.45332 4.56262 4.66497 4.67305 4.69116 4.74966 4.80384 4.84460 4.85660 4.89303 4.96708 5.00088 5.09675 5.26250 5.29424 5.36683 5.37480 5.42523 5.58977 5.74630 5.88181 5.93555 6.07050 6.40216 6.60192 6.71608 6.95058 7.18137 7.34889 8.85802 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.003118 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.656273 B = 8978.657879 C = 9226.981260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.015 4.015 3 C -0.197 4.197 4 C 0.137 3.863 5 C -0.099 4.099 6 N -0.523 5.523 7 C 0.339 3.661 8 N -0.631 5.631 9 C 0.508 3.492 10 O -0.462 6.462 11 C 0.488 3.512 12 O -0.564 6.564 13 N -0.560 5.560 14 C 0.077 3.923 15 C 0.260 3.740 16 H 0.024 0.976 17 C -0.134 4.134 18 C -0.547 4.547 19 H 0.060 0.940 20 C 0.021 3.979 21 N -0.913 5.913 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.265 1.265 25 H -0.276 1.276 26 C -0.211 4.211 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.435 0.565 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.268 0.732 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.871 17.350 -3.578 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.023 4.023 3 C -0.217 4.217 4 C -0.001 4.001 5 C -0.156 4.156 6 N -0.240 5.240 7 C 0.109 3.891 8 N -0.280 5.280 9 C 0.288 3.712 10 O -0.331 6.331 11 C 0.270 3.730 12 O -0.446 6.446 13 N -0.290 5.290 14 C -0.065 4.065 15 C 0.159 3.841 16 H 0.042 0.958 17 C -0.192 4.192 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.179 4.179 21 N -0.551 5.551 22 Si 0.791 3.209 23 H -0.205 1.205 24 H -0.190 1.190 25 H -0.202 1.202 26 C -0.234 4.234 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.185 0.815 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.275 0.725 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.613 17.319 -3.627 24.271 hybrid contribution -0.183 -1.121 0.702 1.335 sum -16.796 16.198 -2.925 23.517 Atomic orbital electron populations 1.20898 0.87075 1.04738 1.04055 1.20539 0.98496 0.91371 0.91891 1.22126 0.93778 1.00250 1.05596 1.21692 0.92451 0.93130 0.92787 1.20774 0.99915 0.91257 1.03704 1.67353 1.41506 0.97748 1.17433 1.18648 0.88873 0.85537 0.96015 1.43187 1.05892 1.09072 1.69874 1.20301 0.83363 0.89397 0.78096 1.90722 1.67790 1.31507 1.43075 1.20223 0.83855 0.89102 0.79824 1.90675 1.69333 1.32114 1.52435 1.48246 1.06193 1.10510 1.64083 1.22222 0.98465 0.83509 1.02328 1.18828 0.89715 0.80579 0.94985 0.95770 1.21900 0.99119 1.02818 0.95382 1.21481 1.32127 1.04130 1.00779 0.92222 1.25684 0.96429 0.94606 1.01194 1.69987 1.40208 1.07204 1.37700 0.85490 0.78457 0.77796 0.79185 1.20517 1.18973 1.20155 1.21625 0.90923 1.01590 1.09218 0.89246 0.89173 0.90008 0.81525 0.89762 0.92028 0.87672 0.72460 0.92040 0.88734 0.90873 0.95826 0.93609 0.90571 0.92323 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.06 71.23 0.72 -0.17 16 2 C -0.01 -0.24 5.91 -19.69 -0.12 -0.36 16 3 C -0.20 -3.28 9.44 22.38 0.21 -3.07 16 4 C 0.14 3.19 6.78 42.51 0.29 3.48 16 5 C -0.10 -1.73 10.17 71.24 0.72 -1.00 16 6 N -0.52 -16.31 7.80 -181.19 -1.41 -17.72 16 7 C 0.34 9.71 7.42 132.98 0.99 10.70 16 8 N -0.63 -19.61 5.38 -309.79 -1.67 -21.27 16 9 C 0.51 19.27 7.73 87.24 0.67 19.94 16 10 O -0.46 -18.35 11.40 -3.28 -0.04 -18.39 16 11 C 0.49 21.63 7.73 87.24 0.67 22.30 16 12 O -0.56 -27.32 15.82 -3.25 -0.05 -27.37 16 13 N -0.56 -25.89 2.75 -828.47 -2.28 -28.17 16 14 C 0.08 3.03 8.49 127.77 1.08 4.11 16 15 C 0.26 13.77 2.63 44.24 0.12 13.89 16 16 H 0.02 1.48 6.90 -2.39 -0.02 1.46 16 17 C -0.13 -6.59 8.97 71.98 0.65 -5.94 16 18 C -0.55 -30.17 7.95 25.60 0.20 -29.97 16 19 H 0.06 3.24 7.43 -2.91 -0.02 3.22 16 20 C 0.02 1.17 5.30 84.66 0.45 1.61 16 21 N -0.91 -51.99 11.32 21.45 0.24 -51.75 16 22 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 C -0.21 -4.30 9.64 22.50 0.22 -4.09 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 29 H 0.08 0.54 8.10 -2.38 -0.02 0.52 16 30 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.44 11.65 8.18 -92.71 -0.76 10.89 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 3.67 5.36 -2.48 -0.01 3.65 16 37 H 0.07 2.92 7.12 -2.39 -0.02 2.90 16 38 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.04 2.09 7.67 -2.39 -0.02 2.07 16 40 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 41 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.47 351.68 3.99 -67.48 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.29 Total: 20.61 kcal Atomic # 6 Polarization: 24.56 SS G_CDS: 6.87 Total: 31.44 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.12 Total: -118.91 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.09 Total: -45.76 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.47 3.99 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.419 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.18 seconds