Wall clock time and date at job start Tue Mar 31 2020 11:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38884 * 120.74881 * 2 1 4 4 C 1.38020 * 119.33239 * 180.24625 * 3 2 1 5 5 N 1.31968 * 120.85262 * 359.47714 * 4 3 2 6 6 C 1.32401 * 121.62495 * 0.25081 * 5 4 3 7 7 N 1.39002 * 119.70601 * 180.02562 * 6 5 4 8 8 C 1.46849 * 110.99858 * 272.35602 * 7 6 5 9 9 C 1.53041 * 109.52095 * 185.83950 * 8 7 6 10 10 C 1.53119 * 109.27963 * 300.82227 * 9 8 7 11 11 C 1.52999 * 109.52101 * 177.55846 * 10 9 8 12 12 C 1.50707 * 109.47159 * 65.31961 * 11 10 9 13 13 H 1.07996 * 119.99564 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99831 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00386 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47297 * 119.99899 * 16 14 12 19 19 H 1.48499 * 109.47023 * 239.99883 * 16 14 12 20 20 C 1.53122 * 109.16055 * 57.65543 * 10 9 8 21 21 C 1.46839 * 111.00052 * 36.56794 * 7 6 5 22 22 C 1.38298 * 120.74501 * 179.72717 * 2 1 3 23 23 N 1.35499 * 120.45294 * 359.97438 * 22 2 1 24 24 O 1.21801 * 119.99783 * 269.72382 * 23 22 2 25 25 O 1.21802 * 119.99997 * 89.72306 * 23 22 2 26 26 H 1.09010 * 109.46940 * 270.27504 * 1 2 3 27 27 H 1.08998 * 109.47298 * 30.26654 * 1 2 3 28 28 H 1.08992 * 109.47706 * 150.27568 * 1 2 3 29 29 H 1.08003 * 120.33117 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.57278 * 179.75278 * 4 3 2 31 31 H 1.08994 * 109.46511 * 305.85731 * 8 7 6 32 32 H 1.08995 * 109.46033 * 65.83013 * 8 7 6 33 33 H 1.08999 * 109.50146 * 180.88023 * 9 8 7 34 34 H 1.09007 * 109.50251 * 60.76670 * 9 8 7 35 35 H 1.08994 * 109.52356 * 297.74669 * 10 9 8 36 36 H 1.08999 * 109.47033 * 185.31788 * 11 10 9 37 37 H 1.08999 * 109.47557 * 305.31763 * 11 10 9 38 38 H 0.96998 * 120.00060 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.50358 * 182.40622 * 20 10 9 40 40 H 1.08996 * 109.50138 * 62.28525 * 20 10 9 41 41 H 1.09001 * 109.46590 * 294.17471 * 21 7 6 42 42 H 1.09004 * 109.46224 * 54.14610 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1595 -0.0052 5 7 4.2454 0.0102 0.0002 6 6 3.6048 -1.1485 0.0058 7 7 4.3281 -2.3355 0.0120 8 6 4.6505 -2.7623 -1.3556 9 6 5.3164 -4.1397 -1.3178 10 6 6.5914 -4.0619 -0.4736 11 6 7.2293 -5.4495 -0.3817 12 6 7.6915 -5.8816 -1.7495 13 1 7.5445 -5.2316 -2.5993 14 6 8.3019 -7.1065 -1.9158 15 7 8.4813 -7.8979 -0.8807 16 14 8.8742 -7.6424 -3.6113 17 1 8.5571 -6.5801 -4.5995 18 1 10.3405 -7.8757 -3.5881 19 1 8.1792 -8.8975 -3.9945 20 6 6.2345 -3.5687 0.9314 21 6 5.5419 -2.2079 0.8284 22 6 2.2140 -1.1886 0.0057 23 7 1.5612 -2.3759 0.0118 24 8 1.2727 -2.9068 1.0695 25 8 1.2629 -2.9124 -1.0402 26 1 -0.3633 0.0049 1.0278 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3634 -0.8923 -0.5095 29 1 1.6948 2.1389 -0.0004 30 1 4.1529 2.0853 -0.0092 31 1 3.7348 -2.8177 -1.9442 32 1 5.3311 -2.0423 -1.8099 33 1 5.5697 -4.4494 -2.3318 34 1 4.6311 -4.8633 -0.8762 35 1 7.2928 -3.3675 -0.9361 36 1 8.0827 -5.4130 0.2955 37 1 6.4962 -6.1622 -0.0040 38 1 8.9111 -8.7595 -0.9977 39 1 7.1437 -3.4703 1.5245 40 1 5.5637 -4.2832 1.4084 41 1 6.2184 -1.4904 0.3639 42 1 5.2736 -1.8605 1.8262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574317607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:11 Heat of formation + Delta-G solvation = 39.854970 kcal Electronic energy + Delta-G solvation = -25572.055892 eV Core-core repulsion = 21941.550210 eV Total energy + Delta-G solvation = -3630.505682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -43.16904 -40.88624 -38.75017 -36.47749 -35.30576 -34.48521 -32.67183 -31.33980 -30.63302 -29.07123 -27.96442 -26.51510 -24.43534 -23.14644 -22.56501 -22.49493 -20.77868 -19.64051 -19.04087 -18.89436 -18.44039 -17.43924 -16.29075 -16.07520 -15.55753 -15.34331 -14.54062 -14.51550 -14.17608 -13.87467 -13.67135 -13.55192 -13.39518 -12.98142 -12.84674 -12.50052 -12.15207 -11.74582 -11.61417 -11.39385 -11.22061 -11.01009 -10.94965 -10.79544 -10.73015 -10.44277 -10.40814 -10.26871 -10.07583 -9.88038 -9.60594 -9.13157 -8.90186 -8.74241 -8.31805 -5.96376 -3.98168 0.03577 0.38333 0.46666 1.86274 2.83803 3.09549 3.33212 3.40944 3.44235 3.75623 3.87573 4.20246 4.24923 4.48629 4.48799 4.76655 4.84220 4.96403 5.08499 5.21678 5.27264 5.31441 5.38333 5.43519 5.52651 5.62422 5.71719 5.77244 6.00227 6.07451 6.29241 6.32013 6.47103 6.58106 6.75856 6.88750 6.99730 7.07563 7.13732 7.20635 7.59596 7.70381 7.85593 8.03545 8.45836 9.08247 9.65566 11.14951 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.003457 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.605289 B = 8096.440703 C = 8428.290967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.022 3.978 3 C -0.188 4.188 4 C 0.160 3.840 5 N -0.501 5.501 6 C 0.377 3.623 7 N -0.495 5.495 8 C 0.060 3.940 9 C -0.099 4.099 10 C -0.082 4.082 11 C 0.029 3.971 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.114 4.114 21 C 0.067 3.933 22 C -0.106 4.106 23 N 0.071 4.929 24 O -0.140 6.140 25 O -0.156 6.156 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 21.387 2.877 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 C -0.209 4.209 4 C 0.001 3.999 5 N -0.215 5.215 6 C 0.145 3.855 7 N -0.217 5.217 8 C -0.064 4.064 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.008 4.008 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.152 4.152 21 C -0.059 4.059 22 C -0.197 4.197 23 N 0.598 4.402 24 O -0.360 6.360 25 O -0.371 6.371 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.174 0.826 30 H 0.191 0.809 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.572 21.456 3.089 25.575 hybrid contribution -0.154 0.004 -1.149 1.159 sum -13.726 21.460 1.940 25.548 Atomic orbital electron populations 1.21085 0.88320 1.05100 1.04603 1.20087 0.97649 0.90319 0.90633 1.21997 0.95389 0.98078 1.05422 1.23055 0.91828 0.96204 0.88764 1.68243 1.39849 0.97939 1.15448 1.19777 0.87573 0.90131 0.87998 1.60073 1.25118 1.21309 1.15240 1.22458 1.00344 0.99360 0.84283 1.21606 0.96889 0.92812 1.02329 1.21279 0.95620 1.00701 0.92496 1.19112 0.95398 0.89280 0.97047 1.21267 1.37973 1.01910 0.94223 0.92645 1.25015 0.96130 0.96796 0.96508 1.69974 1.43683 1.10300 1.29472 0.86592 0.78338 0.78623 0.84782 1.19803 1.21133 1.21025 1.21765 0.99538 0.94401 0.99471 1.22158 0.88462 0.99415 0.95822 1.19015 0.93743 0.87175 1.19782 1.39055 0.99055 1.01312 1.00824 1.94597 1.55809 1.65803 1.19813 1.94600 1.56215 1.65719 1.20580 0.88584 0.88829 0.90415 0.82611 0.80879 0.90686 0.93386 0.89756 0.91279 0.92623 0.96579 0.96336 0.93111 0.91172 0.91293 0.92509 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.81 36.01 0.35 -0.57 16 2 C 0.02 0.21 5.91 -104.36 -0.62 -0.41 16 3 C -0.19 -1.29 9.81 -39.42 -0.39 -1.67 16 4 C 0.16 1.29 11.17 -17.57 -0.20 1.10 16 5 N -0.50 -6.19 9.25 -12.44 -0.12 -6.30 16 6 C 0.38 5.39 5.57 -155.02 -0.86 4.53 16 7 N -0.50 -8.00 4.30 -173.23 -0.74 -8.74 16 8 C 0.06 0.99 5.40 -3.83 -0.02 0.97 16 9 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 10 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.52 -14.38 8.45 -34.44 -0.29 -14.67 16 13 H 0.06 1.50 7.08 -52.49 -0.37 1.13 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.11 -2.01 5.38 -26.65 -0.14 -2.16 16 21 C 0.07 1.06 4.93 -3.84 -0.02 1.04 16 22 C -0.11 -1.42 5.54 -85.89 -0.48 -1.89 16 23 N 0.07 1.09 2.60 31.55 0.08 1.17 16 24 O -0.14 -2.30 19.13 -29.46 -0.56 -2.86 16 25 O -0.16 -2.54 18.59 -29.46 -0.55 -3.08 16 26 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.09 0.38 8.10 -51.93 -0.42 -0.04 16 28 H 0.08 0.66 7.39 -51.93 -0.38 0.28 16 29 H 0.16 0.46 8.06 -52.48 -0.42 0.04 16 30 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.70 7.05 -51.93 -0.37 1.33 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.88 7.80 -51.93 -0.40 0.48 16 42 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -32.62 350.07 -10.25 -42.87 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.13 Total: -3.25 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.22 Total: -15.52 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.04 Total: -40.18 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -1.11 Total: -5.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.62 -10.25 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574317607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.721 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds