Wall clock time and date at job start Tue Mar 31 2020 08:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00215 * 2 1 4 4 H 1.48500 * 109.46787 * 275.43273 * 3 2 1 5 5 H 1.48505 * 109.47093 * 35.42489 * 3 2 1 6 6 H 1.48500 * 109.47392 * 155.43029 * 3 2 1 7 7 C 1.38812 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99922 * 345.07386 * 7 2 1 9 9 N 1.36937 * 120.00141 * 165.06652 * 7 2 1 10 10 C 1.46960 * 120.59699 * 331.25207 * 9 7 2 11 11 C 1.53361 * 108.64123 * 235.20760 * 10 9 7 12 12 N 1.46969 * 108.63420 * 310.57647 * 11 10 9 13 13 C 1.34774 * 120.59572 * 235.20423 * 12 11 10 14 14 O 1.21617 * 119.99766 * 6.20020 * 13 12 11 15 15 C 1.47415 * 120.00063 * 186.20452 * 13 12 11 16 16 C 1.36092 * 126.44915 * 187.20627 * 15 13 12 17 17 O 1.34253 * 106.95193 * 179.97438 * 16 15 13 18 18 C 1.34052 * 108.22644 * 0.02562 * 17 16 15 19 19 C 1.50696 * 125.37922 * 179.97438 * 18 17 16 20 20 C 1.53782 * 113.61218 * 60.02647 * 19 18 17 21 21 C 1.53779 * 87.08462 * 220.01579 * 20 19 18 22 22 C 1.53786 * 87.17074 * 25.39245 * 21 20 19 23 23 N 1.29930 * 109.24246 * 0.26380 * 18 17 16 24 24 C 1.46964 * 118.81027 * 55.47712 * 12 11 10 25 25 C 1.46961 * 120.59156 * 151.23638 * 9 7 2 26 26 H 0.97003 * 119.99735 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.60961 * 115.45823 * 10 9 7 28 28 H 1.09010 * 109.75168 * 355.03648 * 10 9 7 29 29 H 1.09001 * 109.61729 * 190.83187 * 11 10 9 30 30 H 1.09006 * 109.61175 * 70.31774 * 11 10 9 31 31 H 1.08000 * 126.52345 * 0.03979 * 16 15 13 32 32 H 1.09004 * 112.85228 * 191.22034 * 19 18 17 33 33 H 1.09007 * 113.61548 * 105.46806 * 20 19 18 34 34 H 1.08994 * 113.62026 * 334.57178 * 20 19 18 35 35 H 1.09005 * 113.61232 * 139.97877 * 21 20 19 36 36 H 1.08999 * 113.61578 * 270.80261 * 21 20 19 37 37 H 1.08999 * 113.61196 * 89.15357 * 22 21 20 38 38 H 1.08992 * 113.61419 * 220.06032 * 22 21 20 39 39 H 1.09004 * 109.61297 * 64.26932 * 24 12 11 40 40 H 1.09003 * 109.60774 * 184.77917 * 24 12 11 41 41 H 1.08995 * 109.61027 * 244.53870 * 25 9 7 42 42 H 1.08997 * 109.61429 * 5.04893 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3829 2.1126 -1.3938 5 1 1.5097 2.6169 0.8116 6 1 3.6005 1.4098 0.5821 7 6 2.0103 -1.2021 0.0005 8 1 1.4976 -2.1216 0.2419 9 7 3.3450 -1.2222 -0.3051 10 6 3.9220 -0.2122 -1.2032 11 6 4.6358 -0.9308 -2.3548 12 7 5.5169 -1.9627 -1.7901 13 6 6.8305 -1.9825 -2.0909 14 8 7.3188 -1.0794 -2.7428 15 6 7.6755 -3.0990 -1.6297 16 6 9.0294 -3.1863 -1.7370 17 8 9.3904 -4.3594 -1.1931 18 6 8.2832 -4.9798 -0.7615 19 6 8.2445 -6.3270 -0.0873 20 6 9.0498 -6.3841 1.2215 21 6 9.5087 -7.7857 0.7861 22 6 9.2559 -7.3352 -0.6624 23 7 7.2481 -4.2389 -1.0219 24 6 4.9388 -2.9761 -0.8965 25 6 4.2260 -2.2541 0.2596 26 1 -0.4850 0.8401 -0.0004 27 1 4.6378 0.3994 -0.6540 28 1 3.1299 0.4214 -1.6024 29 1 5.2291 -0.2136 -2.9220 30 1 3.8983 -1.3972 -3.0081 31 1 9.6881 -2.4512 -2.1753 32 1 7.2342 -6.7258 0.0040 33 1 8.4282 -6.3867 2.1170 34 1 9.8586 -5.6549 1.2688 35 1 10.5574 -7.9889 1.0034 36 1 8.8453 -8.5848 1.1170 37 1 10.1212 -6.8665 -1.1312 38 1 8.8005 -8.1046 -1.2857 39 1 4.2224 -3.5847 -1.4484 40 1 5.7323 -3.6098 -0.5003 41 1 4.9635 -1.7879 0.9129 42 1 3.6328 -2.9714 0.8267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618217536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:00 Heat of formation + Delta-G solvation = 59.918955 kcal Electronic energy + Delta-G solvation = -25355.750755 eV Core-core repulsion = 21726.115113 eV Total energy + Delta-G solvation = -3629.635642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.64427 -39.62964 -38.97369 -37.03011 -35.16821 -33.84257 -31.43980 -31.05483 -30.48719 -27.35691 -26.43324 -26.11356 -24.51178 -23.60917 -22.66471 -21.86722 -20.98516 -20.01870 -18.90899 -17.62228 -17.12021 -16.91792 -16.34885 -16.00771 -15.72585 -15.35303 -15.22668 -14.63469 -14.19871 -13.90320 -13.84283 -13.41434 -13.20018 -12.99334 -12.85826 -12.77543 -12.50253 -12.35792 -11.92385 -11.47702 -11.42015 -11.29750 -10.97743 -10.95708 -10.89571 -10.50953 -10.18284 -10.13859 -10.04364 -9.60338 -9.43265 -9.15002 -8.79915 -8.28042 -6.91971 -5.94943 -3.35764 1.00388 1.85767 2.35731 3.16781 3.31232 3.37231 3.48238 3.49916 3.65651 4.06476 4.15981 4.38052 4.42094 4.50550 4.69837 4.71946 4.97729 5.17083 5.24053 5.27084 5.33380 5.39154 5.45798 5.48896 5.51414 5.58227 5.61879 5.68554 5.82442 5.89148 5.95755 6.03437 6.13898 6.20342 6.41200 6.56569 6.59974 6.77262 6.96414 7.34361 7.75386 7.93676 8.31578 8.33106 8.89975 9.69021 10.06449 11.20903 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.003654 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.901601 B = 7661.416888 C = 8488.036417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.887 3.113 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.088 0.912 9 N -0.608 5.608 10 C 0.114 3.886 11 C 0.093 3.907 12 N -0.577 5.577 13 C 0.591 3.409 14 O -0.553 6.553 15 C -0.057 4.057 16 C 0.004 3.996 17 O -0.195 6.195 18 C 0.206 3.794 19 C -0.021 4.021 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.132 4.132 23 N -0.450 5.450 24 C 0.059 3.941 25 C 0.137 3.863 26 H 0.263 0.737 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.230 0.770 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.024 0.976 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.100 -14.829 -0.410 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.105 0.895 9 N -0.332 5.332 10 C -0.012 4.012 11 C -0.030 4.030 12 N -0.307 5.307 13 C 0.378 3.622 14 O -0.433 6.433 15 C -0.177 4.177 16 C -0.069 4.069 17 O -0.081 6.081 18 C -0.002 4.002 19 C -0.040 4.040 20 C -0.169 4.169 21 C -0.177 4.177 22 C -0.171 4.171 23 N -0.180 5.180 24 C -0.065 4.065 25 C 0.011 3.989 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.042 0.958 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.531 -14.428 -0.580 25.100 hybrid contribution 0.812 1.386 -0.279 1.630 sum 21.344 -13.042 -0.859 25.027 Atomic orbital electron populations 1.69775 1.05624 1.26533 1.53608 1.25312 0.95315 0.97679 0.99345 0.86924 0.80000 0.84322 0.76972 1.21597 1.23169 1.19250 1.18962 0.82175 0.94432 1.43311 0.89458 1.44318 1.06058 1.31586 1.51224 1.21774 0.96524 0.92199 0.90743 1.22336 0.92649 0.90791 0.97254 1.47840 1.06667 1.30038 1.46125 1.16860 0.81749 0.83626 0.79992 1.90774 1.73250 1.37187 1.42058 1.21880 0.93002 0.96069 1.06708 1.25220 0.96205 0.86804 0.98689 1.84320 1.37733 1.27914 1.58143 1.26284 0.78364 0.97242 0.98342 1.21379 1.02300 0.84648 0.95688 1.23022 0.99667 0.97938 0.96249 1.22820 1.02319 0.96860 0.95674 1.23051 0.98651 0.97885 0.97466 1.70672 1.28953 1.03127 1.15263 1.23400 1.00246 0.90605 0.92212 1.21402 0.92824 0.91685 0.93025 0.92713 0.94781 0.90210 0.89643 0.90923 0.75385 0.84729 0.89985 0.89456 0.90677 0.89390 0.89281 0.90229 0.91719 0.85066 0.95783 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.97 55.49 0.78 -27.35 16 2 C 0.02 0.65 5.34 -17.43 -0.09 0.56 16 3 Si 0.89 22.78 24.31 -169.99 -4.13 18.65 16 4 H -0.29 -7.15 6.77 56.52 0.38 -6.77 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.27 -6.79 5.99 56.52 0.34 -6.45 16 7 C -0.26 -7.32 10.07 -15.06 -0.15 -7.47 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 N -0.61 -14.81 2.76 -171.77 -0.47 -15.28 16 10 C 0.11 2.61 4.29 -3.60 -0.02 2.59 16 11 C 0.09 1.87 6.60 -3.60 -0.02 1.84 16 12 N -0.58 -10.96 2.94 -173.48 -0.51 -11.47 16 13 C 0.59 10.73 7.68 -12.53 -0.10 10.63 16 14 O -0.55 -11.01 16.31 5.26 0.09 -10.92 16 15 C -0.06 -0.85 6.68 -83.02 -0.55 -1.41 16 16 C 0.00 0.05 11.95 29.96 0.36 0.41 16 17 O -0.19 -2.09 10.40 6.52 0.07 -2.03 16 18 C 0.21 2.26 7.33 -13.08 -0.10 2.16 16 19 C -0.02 -0.16 4.29 -90.87 -0.39 -0.55 16 20 C -0.13 -0.79 7.63 -25.92 -0.20 -0.99 16 21 C -0.14 -0.64 8.08 -25.92 -0.21 -0.85 16 22 C -0.13 -0.75 7.64 -25.82 -0.20 -0.95 16 23 N -0.45 -6.23 7.80 -7.66 -0.06 -6.29 16 24 C 0.06 1.06 6.35 -3.36 -0.02 1.04 16 25 C 0.14 2.79 6.69 -3.37 -0.02 2.77 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.03 0.80 6.82 -51.93 -0.35 0.45 16 28 H 0.08 1.94 4.21 -51.92 -0.22 1.72 16 29 H 0.09 1.64 6.99 -51.93 -0.36 1.28 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.23 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.54 7.82 -51.93 -0.41 0.14 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.13 2.14 3.99 -65.06 -0.26 1.88 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -33.90 334.39 -6.80 -40.70 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.88 Total: -0.84 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.71 Total: 9.78 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.27 Total: -60.38 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.15 Total: -12.95 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.90 -6.80 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618217536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.619 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds