Wall clock time and date at job start Tue Mar 31 2020 08:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21491 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.48336 * 119.99668 * 180.02562 * 14 13 12 17 17 C 1.42274 * 126.93695 * 179.71442 * 16 14 13 18 18 C 1.35312 * 103.92121 * 179.88560 * 17 16 14 19 19 C 1.50701 * 126.66409 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49784 * 189.06979 * 19 18 17 21 21 C 1.53001 * 117.49485 * 120.40810 * 19 18 17 22 22 O 1.34017 * 106.66875 * 0.37238 * 18 17 16 23 23 N 1.20910 * 111.84477 * 359.74318 * 22 18 17 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 32 32 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 33 33 H 1.08001 * 128.03338 * 0.02562 * 17 16 14 34 34 H 1.08999 * 115.55022 * 334.74231 * 19 18 17 35 35 H 1.09001 * 117.49517 * 0.02562 * 20 19 18 36 36 H 1.08993 * 117.49674 * 145.02435 * 20 19 18 37 37 H 1.09004 * 117.49579 * 214.97337 * 21 19 18 38 38 H 1.08998 * 117.50529 * 359.97438 * 21 19 18 39 39 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 40 40 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 41 41 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 42 42 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5958 -0.9835 -3.4488 16 6 7.8500 -2.7830 -4.9238 17 6 8.9358 -2.3113 -5.7130 18 6 9.1520 -3.3104 -6.5996 19 6 10.1987 -3.3409 -7.6833 20 6 10.1253 -4.4779 -8.7046 21 6 11.2264 -4.4736 -7.6411 22 8 8.2494 -4.2641 -6.3316 23 7 7.5362 -3.9606 -5.4037 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2781 -1.3980 -1.4672 32 1 5.8557 -3.5342 -3.4126 33 1 9.4658 -1.3746 -5.6234 34 1 10.5371 -2.3672 -8.0376 35 1 9.3196 -5.2035 -8.5928 36 1 10.4158 -4.2522 -9.7306 37 1 12.2408 -4.2452 -7.9681 38 1 11.1457 -5.1964 -6.8293 39 1 5.6320 -3.6849 -0.7278 40 1 4.1091 -3.5392 -1.6388 41 1 5.0116 -1.7874 0.6940 42 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701316921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:43 Heat of formation + Delta-G solvation = 77.640857 kcal Electronic energy + Delta-G solvation = -24490.969904 eV Core-core repulsion = 20862.102741 eV Total energy + Delta-G solvation = -3628.867163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -45.37280 -39.85810 -37.89535 -37.67911 -34.70071 -34.25431 -32.31865 -31.71576 -30.44305 -30.09322 -25.91749 -24.62858 -23.89242 -22.96188 -22.87767 -22.69744 -21.58522 -20.16573 -19.41122 -18.10192 -17.88874 -17.06412 -16.78327 -16.30753 -15.95303 -15.10424 -14.86891 -14.83458 -14.19129 -13.97967 -13.84022 -13.77839 -13.22316 -12.96291 -12.88651 -12.36980 -12.14277 -11.99267 -11.97096 -11.81884 -11.68233 -11.14940 -11.03029 -10.86612 -10.70814 -10.63176 -10.37766 -10.16830 -10.04793 -9.82618 -9.56913 -9.50699 -8.92860 -8.62151 -7.00607 -5.95138 -3.31523 0.83529 1.35373 2.51021 2.89250 3.07315 3.27275 3.34821 3.50485 3.54067 3.73138 3.92525 4.21083 4.34723 4.53860 4.56973 4.80207 4.92642 4.94505 5.05238 5.09365 5.16624 5.26697 5.29971 5.39226 5.45864 5.54117 5.57192 5.61885 5.79075 5.99717 6.02591 6.12148 6.26435 6.37746 6.54455 6.59449 6.65457 6.65803 6.88903 7.37883 7.74371 7.95052 8.05831 8.32104 8.92716 9.71464 10.08511 11.20596 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.035706 B = 0.002669 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.995007 B =10488.670775 C =10729.461476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.142 4.142 12 C 0.150 3.850 13 N -0.706 5.706 14 C 0.595 3.405 15 O -0.522 6.522 16 C -0.019 4.019 17 C -0.175 4.175 18 C -0.005 4.005 19 C -0.087 4.087 20 C -0.166 4.166 21 C -0.162 4.162 22 O 0.120 5.880 23 N -0.331 5.331 24 C -0.141 4.141 25 C 0.152 3.848 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.403 0.597 33 H 0.181 0.819 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.026 0.974 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.521 -9.546 -16.241 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.182 4.182 12 C 0.047 3.953 13 N -0.356 5.356 14 C 0.378 3.622 15 O -0.396 6.396 16 C -0.178 4.178 17 C -0.198 4.198 18 C -0.068 4.068 19 C -0.106 4.106 20 C -0.203 4.203 21 C -0.199 4.199 22 O 0.045 5.955 23 N -0.032 5.032 24 C -0.181 4.181 25 C 0.026 3.974 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.238 0.762 33 H 0.199 0.801 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.650 -9.531 -15.546 28.306 hybrid contribution 0.684 1.304 -0.258 1.495 sum 22.334 -8.227 -15.804 28.570 Atomic orbital electron populations 1.69839 1.05722 1.26587 1.52895 1.25282 0.95240 0.97632 0.99397 0.86972 0.80086 0.84627 0.77116 1.21573 1.23095 1.19453 1.18910 0.84889 0.94789 1.40337 0.89609 1.44406 1.08692 1.33352 1.46557 1.21320 0.97298 0.92021 0.89104 1.22420 0.97559 0.98638 0.99596 1.21130 0.94560 0.93836 0.85784 1.46182 1.33021 1.22281 1.34151 1.16894 0.79989 0.84779 0.80569 1.90809 1.64009 1.19216 1.65583 1.23625 0.99627 0.93281 1.01298 1.22349 0.99271 1.02240 0.95920 1.23418 0.94696 0.89125 0.99518 1.20458 0.96468 0.97395 0.96297 1.23116 1.01805 0.99770 0.95579 1.23149 0.95255 0.99495 1.01978 1.84748 1.33653 1.39725 1.37342 1.74190 1.13170 1.15386 1.00455 1.22348 0.99667 0.97570 0.98494 1.20864 0.92510 0.91506 0.92556 0.92751 0.90610 0.95375 0.91464 0.92243 0.89537 0.76192 0.80115 0.84119 0.87653 0.87439 0.87357 0.88057 0.91977 0.91185 0.95609 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 13.97 55.49 0.78 -27.22 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.80 24.34 -169.99 -4.14 18.66 16 4 H -0.29 -7.25 6.62 56.52 0.37 -6.87 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.27 -6.87 6.64 56.52 0.38 -6.49 16 7 C -0.26 -7.30 10.03 -15.06 -0.15 -7.45 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.46 2.77 -172.32 -0.48 -14.94 16 10 C 0.13 2.91 4.20 -3.71 -0.02 2.89 16 11 C -0.14 -2.71 5.66 -26.59 -0.15 -2.86 16 12 C 0.15 2.51 2.41 -67.87 -0.16 2.34 16 13 N -0.71 -10.40 5.08 -54.54 -0.28 -10.68 16 14 C 0.59 9.27 7.81 -12.10 -0.09 9.17 16 15 O -0.52 -9.60 16.61 5.37 0.09 -9.51 16 16 C -0.02 -0.25 7.19 -82.53 -0.59 -0.84 16 17 C -0.18 -1.86 10.92 -39.07 -0.43 -2.29 16 18 C 0.00 -0.04 6.93 -35.35 -0.24 -0.29 16 19 C -0.09 -0.47 6.26 -91.77 -0.57 -1.04 16 20 C -0.17 -0.70 10.18 -26.69 -0.27 -0.97 16 21 C -0.16 -0.67 10.24 -26.69 -0.27 -0.95 16 22 O 0.12 1.27 10.96 17.24 0.19 1.46 16 23 N -0.33 -4.13 11.84 33.29 0.39 -3.74 16 24 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 25 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.08 1.87 4.49 -51.93 -0.23 1.64 16 28 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 32 H 0.40 5.24 8.36 -40.82 -0.34 4.89 16 33 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.11 0.50 8.01 -51.93 -0.42 0.09 16 36 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -33.08 346.23 -7.45 -40.53 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.00 Total: 1.38 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.22 Total: -1.16 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.41 Total: -56.57 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.28 Total: -8.05 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.08 -7.45 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.173 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds