Wall clock time and date at job start Tue Mar 31 2020 08:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21491 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.48336 * 119.99668 * 180.02562 * 14 13 12 17 17 C 1.42274 * 126.93695 * 179.71442 * 16 14 13 18 18 C 1.35312 * 103.92121 * 179.88560 * 17 16 14 19 19 C 1.50701 * 126.66409 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49784 * 189.06979 * 19 18 17 21 21 C 1.53001 * 117.49485 * 120.40810 * 19 18 17 22 22 O 1.34017 * 106.66875 * 0.37238 * 18 17 16 23 23 N 1.20910 * 111.84477 * 359.74318 * 22 18 17 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 32 32 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 33 33 H 1.08001 * 128.03338 * 0.02562 * 17 16 14 34 34 H 1.08999 * 115.55022 * 334.74231 * 19 18 17 35 35 H 1.09001 * 117.49517 * 0.02562 * 20 19 18 36 36 H 1.08993 * 117.49674 * 145.02435 * 20 19 18 37 37 H 1.09004 * 117.49579 * 214.97337 * 21 19 18 38 38 H 1.08998 * 117.50529 * 359.97438 * 21 19 18 39 39 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 40 40 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 41 41 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 42 42 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5958 -0.9835 -3.4488 16 6 7.8500 -2.7830 -4.9238 17 6 8.9358 -2.3113 -5.7130 18 6 9.1520 -3.3104 -6.5996 19 6 10.1987 -3.3409 -7.6833 20 6 10.1253 -4.4779 -8.7046 21 6 11.2264 -4.4736 -7.6411 22 8 8.2494 -4.2641 -6.3316 23 7 7.5362 -3.9606 -5.4037 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2781 -1.3980 -1.4672 32 1 5.8557 -3.5342 -3.4126 33 1 9.4658 -1.3746 -5.6234 34 1 10.5371 -2.3672 -8.0376 35 1 9.3196 -5.2035 -8.5928 36 1 10.4158 -4.2522 -9.7306 37 1 12.2408 -4.2452 -7.9681 38 1 11.1457 -5.1964 -6.8293 39 1 5.6320 -3.6849 -0.7278 40 1 4.1091 -3.5392 -1.6388 41 1 5.0116 -1.7874 0.6940 42 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701316921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:42 Heat of formation + Delta-G solvation = 55.462632 kcal Electronic energy + Delta-G solvation = -24491.931624 eV Core-core repulsion = 20862.102741 eV Total energy + Delta-G solvation = -3629.828883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.24512 -41.15491 -39.25421 -38.28184 -36.25011 -35.20098 -34.11416 -32.69133 -32.04794 -31.72999 -27.40918 -25.89375 -24.72678 -24.49689 -23.88238 -23.21129 -22.96027 -21.52769 -20.70650 -18.97249 -18.94715 -18.54680 -17.95505 -17.68005 -16.86741 -16.59796 -16.17874 -15.98083 -15.65516 -15.41724 -15.14098 -14.90285 -14.59354 -14.53655 -14.17588 -13.93895 -13.51229 -13.37077 -12.78430 -12.74780 -12.63204 -12.39281 -12.28533 -12.18981 -12.12135 -11.82839 -11.69502 -11.63126 -11.53076 -11.42307 -11.33075 -10.78760 -10.27154 -10.21649 -9.00692 -8.19316 -5.51319 -0.07448 0.53081 1.27843 1.38494 1.47164 1.67173 1.88407 1.94215 2.38759 2.76142 2.91921 3.00882 3.26857 3.32154 3.67429 3.73869 3.83466 3.90925 4.00861 4.03624 4.13655 4.23737 4.28484 4.39540 4.45810 4.58720 4.61381 4.75994 4.80315 4.83588 4.86791 4.92906 5.01945 5.02253 5.08648 5.14607 5.25538 5.27013 5.36512 5.83928 6.10467 6.21002 6.81477 6.87237 6.93857 7.58184 7.99138 9.00182 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.035706 B = 0.002669 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.995007 B =10488.670775 C =10729.461476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.262 1.262 7 C -0.246 4.246 8 H 0.060 0.940 9 N -0.620 5.620 10 C 0.126 3.874 11 C -0.132 4.132 12 C 0.158 3.842 13 N -0.697 5.697 14 C 0.596 3.404 15 O -0.554 6.554 16 C -0.041 4.041 17 C -0.189 4.189 18 C 0.014 3.986 19 C -0.100 4.100 20 C -0.162 4.162 21 C -0.155 4.155 22 O 0.126 5.874 23 N -0.343 5.343 24 C -0.127 4.127 25 C 0.145 3.855 26 H 0.262 0.738 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.193 0.807 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.609 -10.380 -17.917 32.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.228 4.228 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.237 1.237 6 H -0.186 1.186 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.172 4.172 12 C 0.055 3.945 13 N -0.348 5.348 14 C 0.381 3.619 15 O -0.431 6.431 16 C -0.199 4.199 17 C -0.212 4.212 18 C -0.049 4.049 19 C -0.119 4.119 20 C -0.199 4.199 21 C -0.192 4.192 22 O 0.049 5.951 23 N -0.043 5.043 24 C -0.166 4.166 25 C 0.020 3.980 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.250 0.750 33 H 0.210 0.790 34 H 0.180 0.820 35 H 0.116 0.884 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.775 -10.407 -17.229 31.921 hybrid contribution -0.201 1.422 0.186 1.448 sum 24.574 -8.985 -17.043 31.227 Atomic orbital electron populations 1.69954 1.07220 1.27155 1.55677 1.25862 0.95807 1.00705 1.00437 0.86020 0.78891 0.80841 0.77347 1.20705 1.23722 1.18649 1.18890 0.86579 0.93677 1.38388 0.92238 1.44533 1.08057 1.34563 1.47261 1.21287 0.96598 0.92091 0.90005 1.22256 0.97962 0.98888 0.98106 1.20883 0.93678 0.93695 0.86294 1.45978 1.32742 1.22486 1.33570 1.17148 0.79672 0.84395 0.80736 1.90786 1.64979 1.20641 1.66663 1.23432 1.00913 0.94027 1.01504 1.22552 0.99105 1.03352 0.96155 1.23985 0.93994 0.87651 0.99239 1.20754 0.96145 0.99087 0.95923 1.23225 1.01556 0.98628 0.96449 1.23251 0.96091 0.98202 1.01621 1.84721 1.33687 1.40072 1.36610 1.74180 1.13872 1.15207 1.01087 1.22180 1.00247 0.97306 0.96875 1.21092 0.92085 0.90695 0.94130 0.92941 0.93007 0.95056 0.91930 0.92066 0.90213 0.74984 0.78965 0.82008 0.88429 0.85488 0.85310 0.88844 0.88507 0.91227 0.94345 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.48 13.97 21.65 0.30 -60.18 16 2 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 3 Si 0.94 47.82 24.34 68.60 1.67 49.49 16 4 H -0.28 -13.73 6.62 99.48 0.66 -13.07 16 5 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.26 -12.84 6.64 99.48 0.66 -12.18 16 7 C -0.25 -13.94 10.03 84.03 0.84 -13.10 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.62 -29.22 2.77 -699.09 -1.94 -31.16 16 10 C 0.13 5.60 4.20 86.36 0.36 5.96 16 11 C -0.13 -4.90 5.66 30.68 0.17 -4.73 16 12 C 0.16 5.02 2.41 45.03 0.11 5.13 16 13 N -0.70 -19.39 5.08 -444.76 -2.26 -21.65 16 14 C 0.60 17.92 7.81 86.93 0.68 18.60 16 15 O -0.55 -19.95 16.61 -3.69 -0.06 -20.01 16 16 C -0.04 -1.03 7.19 42.96 0.31 -0.72 16 17 C -0.19 -3.73 10.92 22.60 0.25 -3.48 16 18 C 0.01 0.22 6.93 25.01 0.17 0.39 16 19 C -0.10 -0.78 6.26 -11.54 -0.07 -0.85 16 20 C -0.16 -0.88 10.18 30.62 0.31 -0.57 16 21 C -0.15 -0.82 10.24 30.62 0.31 -0.50 16 22 O 0.13 2.44 10.96 71.86 0.79 3.23 16 23 N -0.34 -8.12 11.84 -49.51 -0.59 -8.71 16 24 C -0.13 -3.73 5.55 30.67 0.17 -3.56 16 25 C 0.15 5.37 6.52 86.37 0.56 5.93 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.05 2.55 4.49 -2.39 -0.01 2.54 16 28 H 0.03 1.38 7.07 -2.38 -0.02 1.37 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 32 H 0.41 9.95 8.36 -92.71 -0.78 9.18 16 33 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.71 8.01 -2.39 -0.02 0.69 16 36 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 Total: -1.00 -72.45 346.23 2.72 -69.74 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.17 Total: 12.26 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.63 Total: 6.99 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.48 Total: -121.69 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.73 Total: -16.78 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.67 Total: 49.49 kcal Total: -72.45 2.72 -69.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.198 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds