Wall clock time and date at job start Tue Mar 31 2020 09:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47267 * 299.99832 * 3 2 1 6 6 H 1.48494 * 109.47391 * 60.00011 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21681 * 120.00225 * 359.97438 * 17 16 15 19 19 C 1.46729 * 119.99875 * 180.02562 * 17 16 15 20 20 O 1.35337 * 126.64084 * 359.68195 * 19 17 16 21 21 C 1.33664 * 107.68343 * 179.87827 * 20 19 17 22 22 N 1.30612 * 109.15539 * 0.39761 * 21 20 19 23 23 C 1.33694 * 108.99327 * 359.75323 * 22 21 20 24 24 C 1.50700 * 126.27265 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.49863 * 8.72339 * 24 23 22 26 26 C 1.52998 * 117.50051 * 300.06145 * 24 23 22 27 27 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 29 29 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 30 30 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 31 31 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 32 32 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 33 33 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 34 34 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 35 35 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 36 36 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 37 37 H 1.08004 * 125.42473 * 180.15426 * 21 20 19 38 38 H 1.09004 * 115.55001 * 154.39222 * 24 23 22 39 39 H 1.08992 * 117.49905 * 359.97438 * 25 24 23 40 40 H 1.09002 * 117.49384 * 145.02485 * 25 24 23 41 41 H 1.08998 * 117.49863 * 214.97858 * 26 24 23 42 42 H 1.09000 * 117.49458 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8074 -4.3759 -3.9538 19 6 4.4425 -6.5291 -3.3379 20 8 4.4957 -7.5800 -2.4868 21 6 5.1941 -8.5509 -3.0837 22 7 5.5799 -8.1392 -4.2616 23 6 5.1344 -6.8936 -4.4547 24 6 5.3557 -6.0477 -5.6821 25 6 5.9856 -6.7236 -6.9017 26 6 6.8013 -5.7304 -6.0701 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4234 -1.8591 1.0698 29 1 -0.6984 -2.3872 -0.6175 30 1 0.0113 -4.1089 1.8206 31 1 -1.2709 -4.3832 0.5936 32 1 0.3276 -4.9734 -1.1088 33 1 1.1305 -5.6530 0.3446 34 1 1.6416 -3.6213 -2.4174 35 1 3.1752 -2.9312 -1.8342 36 1 3.0992 -5.7173 -1.2622 37 1 5.4088 -9.5200 -2.6580 38 1 4.6052 -5.2785 -5.8646 39 1 6.2402 -7.7799 -6.8161 40 1 5.6498 -6.3987 -7.8865 41 1 7.0017 -4.7527 -6.5083 42 1 7.5921 -6.1331 -5.4374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028135821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:54 Heat of formation + Delta-G solvation = 37.943909 kcal Electronic energy + Delta-G solvation = -24790.498251 eV Core-core repulsion = 21159.909699 eV Total energy + Delta-G solvation = -3630.588552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.63146 -39.43927 -37.76010 -37.44873 -34.73726 -34.25317 -32.52340 -30.87827 -29.64857 -28.67441 -25.38684 -24.53512 -23.90931 -23.28092 -22.43635 -20.96724 -20.56339 -20.17549 -19.61381 -18.23261 -17.04960 -16.95610 -16.59756 -16.00189 -15.48141 -15.04170 -14.80787 -14.71820 -14.45074 -13.92576 -13.77965 -13.50116 -13.05369 -12.17277 -12.15149 -12.02745 -11.92799 -11.84903 -11.61673 -11.41347 -11.08008 -10.98084 -10.83445 -10.69283 -10.60573 -10.27290 -10.14404 -10.03423 -9.90987 -9.83248 -9.72627 -9.09678 -8.74872 -8.61155 -6.89038 -5.80011 -3.17033 0.68278 2.19529 2.30894 3.09677 3.29328 3.38542 3.44872 3.46519 3.72817 3.86417 4.31969 4.45431 4.68274 4.86442 4.94507 5.19765 5.25540 5.30205 5.34593 5.40881 5.46995 5.53966 5.57872 5.69824 5.76212 5.96803 5.98505 6.02564 6.07118 6.12027 6.19151 6.40904 6.45430 6.50843 6.62682 6.72208 6.97800 7.28270 7.48537 7.56446 7.61563 7.76362 8.17086 8.22578 9.13802 9.74200 10.40657 11.31642 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.003455 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.927364 B = 8101.839691 C = 9283.316466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.107 3.893 16 N -0.708 5.708 17 C 0.600 3.400 18 O -0.512 6.512 19 C -0.098 4.098 20 O -0.190 6.190 21 C 0.195 3.805 22 N -0.491 5.491 23 C 0.103 3.897 24 C -0.090 4.090 25 C -0.163 4.163 26 C -0.158 4.158 27 H 0.254 0.746 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.256 0.744 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.134 -17.781 -5.594 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.358 5.358 17 C 0.384 3.616 18 O -0.390 6.390 19 C -0.154 4.154 20 O -0.076 6.076 21 C -0.030 4.030 22 N -0.220 5.220 23 C -0.020 4.020 24 C -0.109 4.109 25 C -0.200 4.200 26 C -0.196 4.196 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.271 0.729 38 H 0.158 0.842 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.386 -17.221 -6.501 20.227 hybrid contribution 0.071 0.669 0.842 1.078 sum 8.457 -16.551 -5.659 19.429 Atomic orbital electron populations 1.69943 1.05032 1.25253 1.55869 1.24902 0.95682 0.97891 1.01309 0.86067 0.78952 0.83602 0.77286 1.20340 1.21544 1.21685 1.19044 0.90464 0.82135 1.44693 0.90525 1.44506 1.05898 1.00736 1.80104 1.21480 0.84611 0.90322 0.98948 1.23025 0.97447 0.99548 0.98658 1.22655 0.97092 0.97008 0.99882 1.21136 0.94515 0.88174 0.91879 0.94333 1.22404 0.96835 0.82713 0.99787 1.46086 1.53297 1.19168 1.17213 1.16371 0.78806 0.83151 0.83308 1.90872 1.61099 1.42500 1.44485 1.23112 1.09747 0.90529 0.92005 1.84506 1.58091 1.22042 1.42941 1.28260 0.91571 0.94786 0.88414 1.70217 1.23693 1.11090 1.16977 1.20993 0.95276 0.90673 0.95083 1.20555 0.98853 1.00636 0.90824 1.22995 1.03251 0.99158 0.94622 1.22959 0.92754 1.00785 1.03078 0.93609 0.90723 0.95617 0.92269 0.92262 0.91787 0.92333 0.91461 0.90572 0.76564 0.72879 0.84216 0.87909 0.88298 0.87952 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.30 10.54 55.49 0.58 -25.71 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.35 9.73 -15.06 -0.15 -6.50 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.34 3.13 -162.57 -0.51 -14.85 16 10 C 0.17 4.00 5.42 -2.53 -0.01 3.99 16 11 C -0.15 -2.65 7.10 -24.52 -0.17 -2.82 16 12 C -0.13 -2.08 6.07 -24.83 -0.15 -2.23 16 13 C 0.15 2.93 3.22 -66.95 -0.22 2.71 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C 0.11 2.02 5.09 -4.04 -0.02 1.99 16 16 N -0.71 -10.81 5.40 -61.60 -0.33 -11.14 16 17 C 0.60 9.73 7.79 -12.83 -0.10 9.63 16 18 O -0.51 -9.79 14.87 5.21 0.08 -9.72 16 19 C -0.10 -1.37 7.18 -36.84 -0.26 -1.63 16 20 O -0.19 -2.10 10.57 4.44 0.05 -2.06 16 21 C 0.20 1.69 13.21 52.24 0.69 2.38 16 22 N -0.49 -5.75 10.89 -10.89 -0.12 -5.87 16 23 C 0.10 1.39 6.67 -82.47 -0.55 0.84 16 24 C -0.09 -1.15 5.60 -91.77 -0.51 -1.67 16 25 C -0.16 -1.67 10.16 -26.69 -0.27 -1.94 16 26 C -0.16 -1.71 10.24 -26.69 -0.27 -1.99 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.95 6.86 -51.93 -0.36 1.59 16 29 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.37 8.03 -51.93 -0.42 0.96 16 35 H 0.08 1.63 7.86 -51.93 -0.41 1.22 16 36 H 0.40 5.09 8.04 -40.82 -0.33 4.77 16 37 H 0.26 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.14 1.98 6.65 -51.93 -0.35 1.63 16 39 H 0.10 1.06 7.92 -51.93 -0.41 0.65 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -32.05 351.61 -8.09 -40.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.02 Total: 4.38 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.10 Total: 2.64 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.37 Total: -57.57 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.12 Total: -11.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.05 -8.09 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028135821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.086 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds