Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 110.88274 * 2 1 4 4 C 1.34777 * 120.00258 * 62.42949 * 3 2 1 5 5 O 1.21682 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.46726 * 119.99990 * 179.97438 * 4 3 2 7 7 C 1.36344 * 126.64361 * 359.68497 * 6 4 3 8 8 N 1.33688 * 107.45264 * 179.84273 * 7 6 4 9 9 C 1.30623 * 108.99738 * 0.42880 * 8 7 6 10 10 C 1.50693 * 125.42730 * 179.73065 * 9 8 7 11 11 C 1.53003 * 117.49807 * 8.74957 * 10 9 8 12 12 C 1.52998 * 117.49992 * 300.08945 * 10 9 8 13 13 O 1.33664 * 109.14909 * 359.73319 * 9 8 7 14 14 C 1.55149 * 111.03740 * 236.09402 * 2 1 3 15 15 C 1.54321 * 102.94208 * 206.41062 * 14 2 1 16 16 N 1.47015 * 107.27482 * 22.19183 * 15 14 2 17 17 C 1.36933 * 125.65485 * 181.02375 * 16 15 14 18 18 H 1.07996 * 120.00511 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99825 * 0.04440 * 17 16 15 20 20 N 1.31623 * 119.99934 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00153 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47122 * 120.00107 * 21 19 17 24 24 H 1.48501 * 109.47412 * 239.99722 * 21 19 17 25 25 C 1.47425 * 108.70116 * 1.06221 * 16 15 14 26 26 H 1.08997 * 109.47082 * 60.70577 * 1 2 3 27 27 H 1.09007 * 109.46763 * 180.70467 * 1 2 3 28 28 H 1.09000 * 109.46959 * 300.70088 * 1 2 3 29 29 H 0.96999 * 119.99694 * 242.42338 * 3 2 1 30 30 H 1.07997 * 126.26982 * 359.96002 * 7 6 4 31 31 H 1.09003 * 115.55212 * 154.41502 * 10 9 8 32 32 H 1.09008 * 117.49757 * 0.02562 * 11 10 9 33 33 H 1.09007 * 117.50165 * 145.01732 * 11 10 9 34 34 H 1.09002 * 117.50027 * 214.97648 * 12 10 9 35 35 H 1.09007 * 117.49847 * 359.97438 * 12 10 9 36 36 H 1.09003 * 110.72437 * 324.77434 * 14 2 1 37 37 H 1.08996 * 110.72260 * 88.04557 * 14 2 1 38 38 H 1.09009 * 109.88004 * 262.77268 * 15 14 2 39 39 H 1.08999 * 109.88717 * 141.61359 * 15 14 2 40 40 H 0.96998 * 120.00423 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.36803 * 217.03228 * 25 16 15 42 42 H 1.09000 * 110.46285 * 94.75847 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0522 1.3687 0.0000 4 6 1.7877 2.1910 1.0346 5 8 1.1148 1.7966 1.9686 6 6 2.3112 3.5616 1.0348 7 6 3.0798 4.1393 0.0681 8 7 3.3353 5.3932 0.4550 9 6 2.7686 5.6048 1.6127 10 6 2.8260 6.8940 2.3908 11 6 3.4325 8.1135 1.6936 12 6 4.2058 7.4059 2.8092 13 8 2.1297 4.4955 1.9974 14 6 2.0870 -0.8078 -1.2018 15 6 3.4683 -1.2732 -0.6951 16 7 3.4276 -1.2420 0.7742 17 6 4.4642 -1.5649 1.6085 18 1 4.3331 -1.5099 2.6791 19 6 5.6839 -1.9625 1.0782 20 7 5.8437 -2.0297 -0.2266 21 14 7.0984 -2.4024 2.2162 22 1 6.6646 -2.2468 3.6279 23 1 7.5071 -3.8098 1.9767 24 1 8.2477 -1.5009 1.9487 25 6 2.0853 -0.8062 1.2007 26 1 -0.3633 0.5028 -0.8962 27 1 -0.3633 -1.0277 0.0126 28 1 -0.3633 0.5247 0.8836 29 1 2.5884 1.6832 -0.7446 30 1 3.4184 3.6705 -0.8440 31 1 1.9960 7.0671 3.0759 32 1 3.7896 7.9833 0.6720 33 1 3.0018 9.0889 1.9203 34 1 4.2836 7.9160 3.7693 35 1 5.0721 6.8098 2.5220 36 1 1.4482 -1.6634 -1.4207 37 1 2.1930 -0.1699 -2.0793 38 1 4.2433 -0.5984 -1.0589 39 1 3.6666 -2.2884 -1.0389 40 1 6.6960 -2.3072 -0.5972 41 1 2.1554 -0.1714 2.0840 42 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046380310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = 49.606972 kcal Electronic energy + Delta-G solvation = -25274.095226 eV Core-core repulsion = 21644.012423 eV Total energy + Delta-G solvation = -3630.082803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47290 -39.85331 -37.64994 -37.20536 -34.96594 -33.98850 -32.24964 -30.61938 -29.54392 -28.70069 -25.73695 -25.17492 -23.71380 -23.40564 -22.71232 -21.35713 -20.67375 -20.24159 -19.15554 -18.24395 -17.20258 -16.83588 -16.65139 -15.72075 -15.16631 -14.92407 -14.70887 -14.58690 -14.54739 -13.72295 -13.40012 -13.23692 -12.87445 -12.63201 -12.12792 -12.00475 -11.92387 -11.85517 -11.71293 -11.66791 -11.15767 -11.04793 -10.92649 -10.89789 -10.86348 -10.47193 -10.42523 -10.08828 -10.04304 -9.68203 -9.57241 -8.95216 -8.72651 -8.58206 -6.81699 -5.71874 -3.03773 0.80636 2.06599 2.26574 3.27162 3.39905 3.43271 3.46464 3.47900 3.48682 3.88260 4.37710 4.49991 4.51157 4.58435 4.72816 4.82448 5.01563 5.29242 5.29803 5.32681 5.43357 5.51215 5.57070 5.59406 5.67766 5.72201 5.80443 5.92510 6.04463 6.06341 6.09554 6.27369 6.34013 6.46106 6.60051 6.77408 7.00401 7.43127 7.52935 7.53429 7.68237 7.80182 8.24664 8.30915 9.22811 9.82471 10.47768 11.40258 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.004223 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.400101 B = 6628.002621 C = 7959.927926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.681 5.681 4 C 0.603 3.397 5 O -0.520 6.520 6 C -0.086 4.086 7 C 0.022 3.978 8 N -0.484 5.484 9 C 0.237 3.763 10 C -0.085 4.085 11 C -0.144 4.144 12 C -0.153 4.153 13 O -0.166 6.166 14 C -0.145 4.145 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.129 3.871 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.400 0.600 30 H 0.194 0.806 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.056 0.944 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 16.540 -1.337 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.333 5.333 4 C 0.387 3.613 5 O -0.397 6.397 6 C -0.142 4.142 7 C -0.121 4.121 8 N -0.213 5.213 9 C 0.032 3.968 10 C -0.104 4.104 11 C -0.182 4.182 12 C -0.191 4.191 13 O -0.050 6.050 14 C -0.184 4.184 15 C 0.051 3.949 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.003 3.997 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.211 0.789 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.984 16.597 -0.928 18.441 hybrid contribution 0.784 -0.747 0.463 1.178 sum -7.200 15.850 -0.465 17.415 Atomic orbital electron populations 1.22016 0.93983 1.02532 1.02433 1.21603 0.92743 0.79459 0.98922 1.45401 1.53901 1.12612 1.21351 1.16174 0.80501 0.81333 0.83307 1.90821 1.38824 1.75606 1.34446 1.22952 1.07501 0.92939 0.90850 1.23667 0.97564 0.90275 1.00629 1.70241 1.23026 1.17059 1.10997 1.25373 0.91869 0.88246 0.91304 1.20132 1.00616 0.86811 1.02885 1.23125 1.01624 0.94171 0.99238 1.23173 0.93200 1.02567 1.00157 1.84456 1.58222 1.20048 1.42250 1.23249 1.00600 0.98902 0.95650 1.21180 0.89901 1.00084 0.83709 1.44448 1.07741 1.78930 1.01810 1.19114 0.89330 1.37547 0.89042 0.90515 1.24756 0.97717 1.01963 0.96026 1.69947 1.24021 1.54091 1.09156 0.86063 0.82418 0.77723 0.79738 1.20538 1.21740 1.21829 1.21918 0.87716 0.95019 0.95090 0.92866 0.91401 0.91008 0.76479 0.78910 0.84626 0.86952 0.87372 0.87229 0.87768 0.90472 0.91544 0.93559 0.93648 0.93898 0.92601 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.62 37.16 0.32 -1.91 16 2 C 0.16 2.74 0.82 -129.67 -0.11 2.63 16 3 N -0.68 -11.07 5.16 -46.90 -0.24 -11.31 16 4 C 0.60 10.78 7.18 -12.83 -0.09 10.69 16 5 O -0.52 -10.84 13.88 1.35 0.02 -10.82 16 6 C -0.09 -1.40 7.22 -36.84 -0.27 -1.66 16 7 C 0.02 0.31 11.37 -17.43 -0.20 0.11 16 8 N -0.48 -6.88 10.79 -10.81 -0.12 -6.99 16 9 C 0.24 3.23 7.86 -12.80 -0.10 3.13 16 10 C -0.09 -0.80 6.33 -91.77 -0.58 -1.38 16 11 C -0.14 -1.05 10.13 -26.69 -0.27 -1.32 16 12 C -0.15 -1.19 10.24 -26.69 -0.27 -1.46 16 13 O -0.17 -2.70 10.79 0.57 0.01 -2.69 16 14 C -0.15 -2.46 5.99 -24.90 -0.15 -2.61 16 15 C 0.18 4.06 5.36 -3.07 -0.02 4.04 16 16 N -0.60 -15.33 3.39 -170.07 -0.58 -15.90 16 17 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.13 2.82 6.11 -2.53 -0.02 2.80 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.07 1.17 6.45 -51.93 -0.33 0.83 16 29 H 0.40 5.53 7.39 -40.82 -0.30 5.23 16 30 H 0.19 2.11 7.44 -52.49 -0.39 1.72 16 31 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 0.95 7.87 -51.92 -0.41 0.54 16 33 H 0.11 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 37 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.05 1.16 7.38 -51.92 -0.38 0.78 16 39 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 42 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -33.91 347.64 -7.99 -41.90 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.87 Total: 3.07 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.00 Total: 6.26 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.36 Total: -60.39 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.02 Total: -13.52 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.91 -7.99 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046380310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.511 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds