Wall clock time and date at job start Tue Mar 31 2020 10:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 110.88274 * 2 1 4 4 C 1.34777 * 120.00258 * 62.42949 * 3 2 1 5 5 O 1.21682 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.46726 * 119.99990 * 179.97438 * 4 3 2 7 7 C 1.36344 * 126.64361 * 359.68497 * 6 4 3 8 8 N 1.33688 * 107.45264 * 179.84273 * 7 6 4 9 9 C 1.30623 * 108.99738 * 0.42880 * 8 7 6 10 10 C 1.50693 * 125.42730 * 179.73065 * 9 8 7 11 11 C 1.53003 * 117.49807 * 8.74957 * 10 9 8 12 12 C 1.52998 * 117.49992 * 300.08945 * 10 9 8 13 13 O 1.33664 * 109.14909 * 359.73319 * 9 8 7 14 14 C 1.55149 * 111.03740 * 236.09402 * 2 1 3 15 15 C 1.54321 * 102.94208 * 206.41062 * 14 2 1 16 16 N 1.47015 * 107.27482 * 22.19183 * 15 14 2 17 17 C 1.36933 * 125.65485 * 181.02375 * 16 15 14 18 18 H 1.07996 * 120.00511 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99825 * 0.04440 * 17 16 15 20 20 N 1.31623 * 119.99934 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00153 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47122 * 120.00107 * 21 19 17 24 24 H 1.48501 * 109.47412 * 239.99722 * 21 19 17 25 25 C 1.47425 * 108.70116 * 1.06221 * 16 15 14 26 26 H 1.08997 * 109.47082 * 60.70577 * 1 2 3 27 27 H 1.09007 * 109.46763 * 180.70467 * 1 2 3 28 28 H 1.09000 * 109.46959 * 300.70088 * 1 2 3 29 29 H 0.96999 * 119.99694 * 242.42338 * 3 2 1 30 30 H 1.07997 * 126.26982 * 359.96002 * 7 6 4 31 31 H 1.09003 * 115.55212 * 154.41502 * 10 9 8 32 32 H 1.09008 * 117.49757 * 0.02562 * 11 10 9 33 33 H 1.09007 * 117.50165 * 145.01732 * 11 10 9 34 34 H 1.09002 * 117.50027 * 214.97648 * 12 10 9 35 35 H 1.09007 * 117.49847 * 359.97438 * 12 10 9 36 36 H 1.09003 * 110.72437 * 324.77434 * 14 2 1 37 37 H 1.08996 * 110.72260 * 88.04557 * 14 2 1 38 38 H 1.09009 * 109.88004 * 262.77268 * 15 14 2 39 39 H 1.08999 * 109.88717 * 141.61359 * 15 14 2 40 40 H 0.96998 * 120.00423 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.36803 * 217.03228 * 25 16 15 42 42 H 1.09000 * 110.46285 * 94.75847 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0522 1.3687 0.0000 4 6 1.7877 2.1910 1.0346 5 8 1.1148 1.7966 1.9686 6 6 2.3112 3.5616 1.0348 7 6 3.0798 4.1393 0.0681 8 7 3.3353 5.3932 0.4550 9 6 2.7686 5.6048 1.6127 10 6 2.8260 6.8940 2.3908 11 6 3.4325 8.1135 1.6936 12 6 4.2058 7.4059 2.8092 13 8 2.1297 4.4955 1.9974 14 6 2.0870 -0.8078 -1.2018 15 6 3.4683 -1.2732 -0.6951 16 7 3.4276 -1.2420 0.7742 17 6 4.4642 -1.5649 1.6085 18 1 4.3331 -1.5099 2.6791 19 6 5.6839 -1.9625 1.0782 20 7 5.8437 -2.0297 -0.2266 21 14 7.0984 -2.4024 2.2162 22 1 6.6646 -2.2468 3.6279 23 1 7.5071 -3.8098 1.9767 24 1 8.2477 -1.5009 1.9487 25 6 2.0853 -0.8062 1.2007 26 1 -0.3633 0.5028 -0.8962 27 1 -0.3633 -1.0277 0.0126 28 1 -0.3633 0.5247 0.8836 29 1 2.5884 1.6832 -0.7446 30 1 3.4184 3.6705 -0.8440 31 1 1.9960 7.0671 3.0759 32 1 3.7896 7.9833 0.6720 33 1 3.0018 9.0889 1.9203 34 1 4.2836 7.9160 3.7693 35 1 5.0721 6.8098 2.5220 36 1 1.4482 -1.6634 -1.4207 37 1 2.1930 -0.1699 -2.0793 38 1 4.2433 -0.5984 -1.0589 39 1 3.6666 -2.2884 -1.0389 40 1 6.6960 -2.3072 -0.5972 41 1 2.1554 -0.1714 2.0840 42 1 1.4512 -1.6691 1.4040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046380310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:04 Heat of formation + Delta-G solvation = 24.787856 kcal Electronic energy + Delta-G solvation = -25275.171464 eV Core-core repulsion = 21644.012423 eV Total energy + Delta-G solvation = -3631.159041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.60181 -41.28947 -38.91509 -38.23636 -36.17648 -35.64131 -33.91906 -32.23365 -30.92056 -30.25720 -27.54628 -26.29351 -25.32623 -24.55759 -23.31869 -22.69658 -22.00602 -21.65960 -20.61114 -19.57276 -18.73485 -18.11751 -17.90679 -17.20955 -16.70964 -16.29670 -16.00889 -15.78866 -15.65351 -15.54648 -15.02686 -14.46187 -14.24083 -13.90939 -13.58773 -13.44773 -13.36799 -13.13857 -12.88265 -12.79150 -12.77351 -12.45723 -12.27671 -12.09339 -12.03751 -11.95797 -11.88561 -11.73940 -11.59218 -11.57054 -11.01241 -10.72862 -10.27048 -9.90702 -8.87924 -7.87987 -5.21211 -0.36122 0.94474 1.18476 1.41855 1.42254 1.52557 1.96380 2.30600 2.46071 2.72888 2.91485 3.30269 3.40254 3.56112 3.67041 3.69711 3.78370 3.93822 3.96785 4.00613 4.15478 4.36713 4.53342 4.63929 4.66852 4.70202 4.75681 4.85502 4.86515 4.92533 4.96274 5.01731 5.06560 5.11268 5.23627 5.33483 5.41430 5.51286 5.67322 5.76475 6.18967 6.26314 6.44682 6.98862 7.10801 7.75721 8.39258 9.21718 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.004223 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.400101 B = 6628.002621 C = 7959.927926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.168 3.832 3 N -0.674 5.674 4 C 0.602 3.398 5 O -0.560 6.560 6 C -0.124 4.124 7 C 0.043 3.957 8 N -0.501 5.501 9 C 0.245 3.755 10 C -0.110 4.110 11 C -0.126 4.126 12 C -0.147 4.147 13 O -0.189 6.189 14 C -0.125 4.125 15 C 0.182 3.818 16 N -0.621 5.621 17 C -0.243 4.243 18 H 0.066 0.934 19 C -0.056 4.056 20 N -0.942 5.942 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.289 1.289 25 C 0.125 3.875 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.413 0.587 30 H 0.222 0.778 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.248 0.752 41 H 0.028 0.972 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 18.333 -2.147 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.082 3.918 3 N -0.326 5.326 4 C 0.388 3.612 5 O -0.440 6.440 6 C -0.179 4.179 7 C -0.100 4.100 8 N -0.230 5.230 9 C 0.041 3.959 10 C -0.129 4.129 11 C -0.163 4.163 12 C -0.185 4.185 13 O -0.074 6.074 14 C -0.163 4.163 15 C 0.057 3.943 16 N -0.348 5.348 17 C -0.372 4.372 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.591 5.591 21 Si 0.799 3.201 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.001 4.001 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.250 0.750 30 H 0.239 0.761 31 H 0.174 0.826 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.423 18.401 -1.770 20.315 hybrid contribution 0.964 -1.224 0.767 1.737 sum -7.459 17.177 -1.003 18.753 Atomic orbital electron populations 1.21955 0.91388 1.03655 1.03031 1.21508 0.94434 0.79333 0.96508 1.45328 1.53760 1.12030 1.21453 1.16405 0.79851 0.82037 0.82893 1.90792 1.40747 1.76578 1.35868 1.22725 1.10129 0.92792 0.92280 1.24143 0.95351 0.89982 1.00555 1.70328 1.23937 1.17104 1.11594 1.26414 0.89712 0.88576 0.91156 1.20582 1.02467 0.85738 1.04118 1.23244 1.00259 0.94467 0.98373 1.23278 0.91381 1.02068 1.01780 1.84441 1.59216 1.20869 1.42911 1.23133 0.96762 1.00106 0.96342 1.21000 0.93070 0.97720 0.82466 1.44687 1.08394 1.78892 1.02780 1.19329 0.90762 1.37868 0.89247 0.91637 1.25468 0.99759 1.02213 0.97488 1.70130 1.24204 1.54491 1.10283 0.85133 0.79395 0.77307 0.78246 1.20055 1.21383 1.21637 1.22028 0.86528 0.95267 0.96287 0.89881 0.89972 0.92825 0.74996 0.76141 0.82646 0.88230 0.84198 0.84500 0.89540 0.88317 0.87781 0.96179 0.97045 0.94255 0.95381 0.95098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.62 71.98 0.62 -3.25 16 2 C 0.17 5.61 0.82 5.00 0.00 5.61 16 3 N -0.67 -21.36 5.16 -420.52 -2.17 -23.53 16 4 C 0.60 21.82 7.18 86.46 0.62 22.44 16 5 O -0.56 -24.14 13.88 -0.60 -0.01 -24.15 16 6 C -0.12 -4.05 7.22 24.05 0.17 -3.88 16 7 C 0.04 1.16 11.37 83.97 0.95 2.12 16 8 N -0.50 -13.78 10.79 -302.89 -3.27 -17.05 16 9 C 0.25 6.56 7.86 88.29 0.69 7.25 16 10 C -0.11 -1.87 6.33 -11.54 -0.07 -1.95 16 11 C -0.13 -1.51 10.13 30.62 0.31 -1.20 16 12 C -0.15 -1.98 10.24 30.62 0.31 -1.66 16 13 O -0.19 -6.24 10.79 -3.38 -0.04 -6.28 16 14 C -0.13 -3.95 5.99 31.78 0.19 -3.76 16 15 C 0.18 8.45 5.36 86.73 0.47 8.91 16 16 N -0.62 -32.32 3.39 -691.99 -2.35 -34.67 16 17 C -0.24 -14.17 10.28 84.03 0.86 -13.30 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 20 N -0.94 -55.60 10.31 21.65 0.22 -55.37 16 21 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 C 0.13 5.54 6.11 86.86 0.53 6.07 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.01 8.13 -2.38 -0.02 1.99 16 28 H 0.05 1.70 6.45 -2.39 -0.02 1.68 16 29 H 0.41 10.75 7.39 -92.71 -0.69 10.06 16 30 H 0.22 4.40 7.44 -2.91 -0.02 4.38 16 31 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 1.50 7.87 -2.38 -0.02 1.48 16 33 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 2.77 8.04 -2.39 -0.02 2.75 16 37 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 38 H 0.02 1.02 7.38 -2.38 -0.02 1.00 16 39 H 0.01 0.60 7.51 -2.39 -0.02 0.58 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.03 1.39 6.31 -2.39 -0.02 1.38 16 42 H 0.03 1.35 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -77.25 347.64 0.91 -76.33 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.36 Total: 15.17 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.13 Total: 20.65 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -7.56 Total: -130.63 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.04 Total: -30.43 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.25 0.91 -76.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046380310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.119 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds