Wall clock time and date at job start Tue Mar 31 2020 09:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99938 * 2 1 4 4 H 1.48495 * 109.47414 * 269.99939 * 3 2 1 5 5 H 1.48504 * 109.46784 * 30.00058 * 3 2 1 6 6 H 1.48501 * 109.47148 * 149.99650 * 3 2 1 7 7 C 1.38815 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99757 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84606 * 336.18871 * 10 9 7 12 12 C 1.53775 * 113.61531 * 107.50072 * 10 9 7 13 13 C 1.53779 * 87.08045 * 139.98093 * 12 10 9 14 14 H 1.08999 * 113.61746 * 89.11955 * 13 12 10 15 15 C 1.53005 * 113.68852 * 220.00510 * 13 12 10 16 16 N 1.46497 * 109.47155 * 272.53723 * 15 13 12 17 17 C 1.34777 * 120.00009 * 180.02562 * 16 15 13 18 18 O 1.21616 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.47414 * 120.00189 * 180.02562 * 17 16 15 20 20 C 1.36095 * 126.45205 * 180.02562 * 19 17 16 21 21 O 1.34252 * 106.95061 * 179.97438 * 20 19 17 22 22 C 1.34043 * 108.22980 * 359.97438 * 21 20 19 23 23 C 1.50699 * 125.37997 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.49706 * 8.65467 * 23 22 21 25 25 C 1.52998 * 117.50192 * 300.02970 * 23 22 21 26 26 N 1.29939 * 109.24332 * 359.75049 * 22 21 20 27 27 C 1.53779 * 87.08153 * 334.56518 * 13 12 10 28 28 H 0.97000 * 120.00415 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00175 * 359.97438 * 9 7 2 30 30 H 1.09007 * 113.61519 * 254.52700 * 12 10 9 31 31 H 1.08996 * 113.61809 * 25.43059 * 12 10 9 32 32 H 1.09003 * 109.47100 * 32.53919 * 15 13 12 33 33 H 1.09001 * 109.46740 * 152.53717 * 15 13 12 34 34 H 0.97000 * 120.00202 * 359.97438 * 16 15 13 35 35 H 1.08004 * 126.52305 * 0.02562 * 20 19 17 36 36 H 1.09004 * 115.55008 * 154.35453 * 23 22 21 37 37 H 1.08994 * 117.50090 * 359.97438 * 24 23 22 38 38 H 1.09001 * 117.50115 * 145.02329 * 24 23 22 39 39 H 1.09000 * 117.50184 * 214.97663 * 25 23 22 40 40 H 1.09002 * 117.49666 * 359.97438 * 25 23 22 41 41 H 1.09003 * 113.61486 * 270.88670 * 27 13 12 42 42 H 1.08993 * 113.69047 * 139.99324 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5278 -3.2968 0.4051 12 6 4.7877 -2.7921 -1.3436 13 6 5.9848 -3.3090 -0.5284 14 1 5.9130 -4.3653 -0.2690 15 6 7.3428 -2.9352 -1.1261 16 7 7.7454 -3.9539 -2.0988 17 6 8.9162 -3.8333 -2.7555 18 8 9.6382 -2.8786 -2.5407 19 6 9.3210 -4.8581 -3.7347 20 6 10.4678 -4.8680 -4.4675 21 8 10.4370 -5.9741 -5.2277 22 6 9.2973 -6.6300 -4.9678 23 6 8.8695 -7.9244 -5.6100 24 6 9.8918 -8.6490 -6.4880 25 6 8.7000 -7.9365 -7.1306 26 7 8.6216 -5.9757 -4.0712 27 6 5.5259 -2.3658 0.5960 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3619 0.0004 30 1 4.2788 -3.5698 -1.9132 31 1 5.0147 -1.9088 -1.9405 32 1 7.2672 -1.9680 -1.6230 33 1 8.0863 -2.8781 -0.3310 34 1 7.1696 -4.7156 -2.2698 35 1 11.2535 -4.1274 -4.4417 36 1 8.1859 -8.5374 -5.0225 37 1 10.8735 -8.1893 -6.6014 38 1 9.8809 -9.7389 -6.4782 39 1 7.9051 -8.5577 -7.5434 40 1 8.8974 -7.0081 -7.6664 41 1 5.9547 -1.3658 0.5294 42 1 5.6127 -2.7979 1.5928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086218445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:14 Heat of formation + Delta-G solvation = 45.830604 kcal Electronic energy + Delta-G solvation = -23551.770124 eV Core-core repulsion = 19921.523565 eV Total energy + Delta-G solvation = -3630.246559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.83585 -39.78942 -38.54467 -37.74982 -35.25635 -34.77008 -33.29666 -30.88290 -30.59227 -27.83957 -25.19069 -24.75982 -24.47274 -23.35494 -22.98608 -21.53025 -20.95191 -20.35980 -19.34260 -18.29794 -17.42005 -17.25496 -16.99556 -16.30603 -16.03358 -15.40577 -15.29132 -14.88560 -14.58660 -14.22206 -13.94835 -13.61831 -13.30549 -12.98641 -12.67396 -12.22680 -12.18578 -12.01842 -11.96256 -11.62969 -11.56799 -11.25409 -11.22220 -11.17794 -10.90164 -10.55987 -10.46601 -10.14183 -10.07476 -9.81725 -9.54367 -9.34449 -9.05908 -8.88389 -7.26220 -5.77746 -3.13111 0.74041 1.57815 2.10114 2.91103 3.03418 3.19756 3.38154 3.41389 3.41450 3.45943 4.11163 4.26115 4.33037 4.46045 4.58841 4.63313 4.88321 4.89045 5.01534 5.06669 5.12884 5.22472 5.27205 5.40620 5.42601 5.43245 5.47085 5.59577 5.68371 5.73019 5.80806 5.85268 6.17347 6.19361 6.24221 6.35975 6.53000 6.69721 6.99338 7.04834 7.42578 7.98908 8.00524 8.42098 9.20037 9.92816 10.12747 11.40489 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.002336 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.163954 B =11985.577577 C =12567.621700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.092 0.908 15 C 0.131 3.869 16 N -0.705 5.705 17 C 0.599 3.401 18 O -0.540 6.540 19 C -0.067 4.067 20 C 0.010 3.990 21 O -0.196 6.196 22 C 0.228 3.772 23 C -0.074 4.074 24 C -0.162 4.162 25 C -0.157 4.157 26 N -0.454 5.454 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.232 0.768 36 H 0.149 0.851 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.393 -18.022 -12.086 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.202 4.202 13 C -0.146 4.146 14 H 0.110 0.890 15 C 0.008 3.992 16 N -0.355 5.355 17 C 0.383 3.617 18 O -0.418 6.418 19 C -0.188 4.188 20 C -0.063 4.063 21 O -0.082 6.082 22 C 0.020 3.980 23 C -0.093 4.093 24 C -0.200 4.200 25 C -0.194 4.194 26 N -0.184 5.184 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.167 0.833 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.014 -17.543 -11.636 31.190 hybrid contribution 0.936 1.204 -0.311 1.557 sum 23.950 -16.338 -11.947 31.357 Atomic orbital electron populations 1.69698 1.05119 1.25861 1.57394 1.24699 0.95269 0.97278 1.01945 0.86552 0.79239 0.84951 0.77820 1.21066 1.21704 1.20265 1.19143 0.80709 0.94761 1.43108 0.89127 1.42766 1.04083 1.02035 1.88800 1.21507 0.89520 0.90027 0.92896 0.89775 1.23914 0.95922 1.00546 0.99773 1.22645 0.92943 1.00035 0.99007 0.88960 1.21518 0.95897 0.91032 0.90755 1.45853 1.20495 1.27437 1.41680 1.16735 0.81751 0.83603 0.79570 1.90833 1.53382 1.31720 1.65867 1.21854 0.95279 0.97214 1.04413 1.25296 1.00518 0.88612 0.91898 1.84343 1.39537 1.30654 1.53685 1.25102 0.81580 0.96082 0.95251 1.20302 1.05023 0.90196 0.93813 1.23133 0.95081 1.00403 1.01376 1.23162 1.00971 1.03413 0.91904 1.70727 1.29958 1.04796 1.12911 1.23467 0.98925 0.98945 0.97109 0.93043 0.80454 0.92190 0.90445 0.91010 0.91379 0.75431 0.75160 0.83306 0.87779 0.87050 0.86884 0.88052 0.90311 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.74 -17.41 5.21 -52.64 -0.27 -17.68 16 10 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 11 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 12 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 13 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.67 16 16 N -0.70 -8.83 5.55 -61.38 -0.34 -9.17 16 17 C 0.60 8.17 7.81 -12.52 -0.10 8.07 16 18 O -0.54 -8.70 16.89 5.26 0.09 -8.61 16 19 C -0.07 -0.80 6.99 -83.02 -0.58 -1.38 16 20 C 0.01 0.10 11.95 29.96 0.36 0.46 16 21 O -0.20 -1.76 10.40 6.54 0.07 -1.69 16 22 C 0.23 2.12 7.80 -13.08 -0.10 2.02 16 23 C -0.07 -0.44 6.33 -91.78 -0.58 -1.02 16 24 C -0.16 -0.64 10.16 -26.73 -0.27 -0.91 16 25 C -0.16 -0.69 10.23 -26.73 -0.27 -0.96 16 26 N -0.45 -5.18 11.06 -7.66 -0.08 -5.27 16 27 C -0.14 -2.17 7.39 -25.92 -0.19 -2.37 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.36 8.45 5.78 -40.82 -0.24 8.21 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 32 H 0.07 1.02 7.85 -51.93 -0.41 0.62 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.41 4.69 8.20 -40.82 -0.33 4.36 16 35 H 0.23 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.15 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.44 7.94 -51.93 -0.41 0.03 16 38 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -34.39 360.75 -7.93 -42.32 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.04 Total: 9.14 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.85 Total: -3.41 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.08 Total: -60.77 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.16 Total: -10.30 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.39 -7.93 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086218445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.148 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds