Wall clock time and date at job start Tue Mar 31 2020 10:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38064 * 120.33249 * 2 1 4 4 N 1.31948 * 120.85398 * 180.02562 * 3 2 1 5 5 C 1.32418 * 121.62362 * 0.02562 * 4 3 2 6 6 N 1.39015 * 119.70791 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99678 * 55.73383 * 6 5 4 8 8 C 1.50702 * 109.47069 * 164.72228 * 7 6 5 9 9 H 1.07998 * 119.99621 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00032 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00249 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00165 * 359.97438 * 10 8 7 13 13 H 1.48491 * 109.47401 * 89.99934 * 12 10 8 14 14 H 1.48509 * 109.46948 * 210.00074 * 12 10 8 15 15 H 1.48501 * 109.46878 * 329.99819 * 12 10 8 16 16 C 1.46891 * 110.99672 * 291.77564 * 6 5 4 17 17 C 1.54887 * 110.48963 * 313.34203 * 16 6 5 18 18 C 1.54886 * 102.75119 * 156.62494 * 17 16 6 19 19 C 1.54270 * 104.19492 * 322.05378 * 18 17 16 20 20 C 1.53878 * 106.59476 * 23.61218 * 19 18 17 21 21 C 1.39103 * 120.58795 * 0.27115 * 5 4 3 22 22 N 1.48003 * 120.44834 * 179.70740 * 21 5 4 23 23 O 1.21801 * 119.99644 * 181.09555 * 22 21 5 24 24 O 1.21799 * 120.00244 * 1.09543 * 22 21 5 25 25 C 1.38335 * 119.09897 * 359.45960 * 21 5 4 26 26 H 1.08998 * 109.46896 * 90.00287 * 1 2 3 27 27 H 1.08997 * 109.46903 * 209.99762 * 1 2 3 28 28 H 1.08993 * 109.47225 * 330.00036 * 1 2 3 29 29 H 1.08003 * 119.57606 * 0.03895 * 3 2 1 30 30 H 1.09001 * 109.46701 * 284.71329 * 7 6 5 31 31 H 1.08995 * 109.47702 * 44.71581 * 7 6 5 32 32 H 0.96994 * 120.00701 * 180.02562 * 11 10 8 33 33 H 1.09003 * 110.53842 * 190.72771 * 16 6 5 34 34 H 1.09007 * 110.75427 * 274.93491 * 17 16 6 35 35 H 1.09000 * 110.75905 * 38.30432 * 17 16 6 36 36 H 1.08993 * 110.49149 * 80.73001 * 18 17 16 37 37 H 1.08999 * 110.49223 * 203.38267 * 18 17 16 38 38 H 1.08994 * 110.03675 * 264.32888 * 19 18 17 39 39 H 1.09004 * 110.07394 * 142.91564 * 19 18 17 40 40 H 1.08997 * 110.03451 * 240.71310 * 20 19 18 41 41 H 1.09006 * 110.07083 * 119.30760 * 20 19 18 42 42 H 1.07999 * 120.75242 * 180.26495 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2036 -0.0005 5 6 4.2282 0.0825 -0.0015 6 7 5.6171 0.1416 -0.0026 7 6 6.1110 0.9349 1.1308 8 6 7.5832 0.6753 1.3220 9 1 8.1000 -0.0107 0.6674 10 6 8.2701 1.3136 2.3327 11 7 9.5548 1.0867 2.4999 12 14 7.3763 2.5009 3.4645 13 1 6.8398 1.7604 4.6345 14 1 8.3220 3.5464 3.9316 15 1 6.2568 3.1398 2.7272 16 6 6.1204 0.6728 -1.2763 17 6 5.4128 -0.0171 -2.4689 18 6 5.5752 1.0190 -3.6086 19 6 5.4005 2.3824 -2.9082 20 6 5.7472 2.1622 -1.4252 21 6 3.5910 -1.1540 -0.0078 22 7 4.3815 -2.4052 -0.0154 23 8 3.8151 -3.4832 -0.0410 24 8 5.5984 -2.3569 0.0039 25 6 2.2083 -1.1983 -0.0015 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6628 2.1261 0.0006 30 1 5.9522 1.9943 0.9293 31 1 5.5718 0.6522 2.0348 32 1 10.0380 1.5355 3.2112 33 1 7.2002 0.5413 -1.3455 34 1 5.9098 -0.9531 -2.7240 35 1 4.3589 -0.1860 -2.2476 36 1 6.5669 0.9435 -4.0544 37 1 4.8038 0.8776 -4.3656 38 1 4.3693 2.7221 -3.0040 39 1 6.0775 3.1168 -3.3448 40 1 4.8843 2.3951 -0.8014 41 1 6.5926 2.7892 -1.1416 42 1 1.6861 -2.1436 -0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:01 Heat of formation + Delta-G solvation = 54.249275 kcal Electronic energy + Delta-G solvation = -26673.616376 eV Core-core repulsion = 23043.734878 eV Total energy + Delta-G solvation = -3629.881498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -41.91179 -40.65477 -38.48173 -35.98296 -35.23004 -33.44191 -32.82025 -31.98587 -28.78313 -27.93511 -27.59559 -26.58524 -25.52163 -23.44160 -21.94448 -21.60400 -20.26532 -19.57954 -18.48023 -18.30140 -17.11743 -16.92817 -16.68792 -16.32097 -15.92120 -15.15837 -14.59419 -14.27167 -14.02542 -13.85545 -13.45102 -13.26982 -12.98806 -12.73991 -12.57407 -12.49053 -12.18372 -11.72623 -11.23550 -11.03546 -10.97492 -10.86962 -10.71086 -10.66722 -10.53453 -10.47510 -10.40580 -10.37793 -10.25908 -10.00453 -9.53711 -9.23579 -9.08622 -8.58733 -7.84964 -6.05615 -4.03189 0.01607 0.76185 1.65006 1.79418 3.25776 3.30799 3.33466 3.35346 3.75730 4.21755 4.27010 4.39809 4.45513 4.58321 4.77029 4.90884 4.98898 5.13721 5.19604 5.21412 5.26307 5.32030 5.51740 5.62238 5.70439 5.76764 5.82687 5.87012 5.96410 5.99341 6.09955 6.16411 6.33212 6.48796 6.59471 6.72203 6.79351 6.84237 6.91788 7.43305 7.54943 7.58303 7.82243 8.20411 8.58281 9.06515 9.54083 11.07077 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.006263 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.888731 B = 4469.498668 C = 4759.741897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.161 4.161 3 C 0.153 3.847 4 N -0.493 5.493 5 C 0.388 3.612 6 N -0.466 5.466 7 C 0.172 3.828 8 C -0.504 4.504 9 H 0.089 0.911 10 C 0.074 3.926 11 N -0.894 5.894 12 Si 0.865 3.135 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.266 1.266 16 C 0.106 3.894 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.170 4.170 21 C -0.081 4.081 22 N 0.030 4.970 23 O -0.218 6.218 24 O -0.063 6.063 25 C -0.014 4.014 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.168 0.832 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 1.103 -8.990 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.164 4.164 3 C -0.007 4.007 4 N -0.206 5.206 5 C 0.159 3.841 6 N -0.189 5.189 7 C 0.048 3.952 8 C -0.543 4.543 9 H 0.107 0.893 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.692 3.308 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.191 1.191 16 C 0.000 4.000 17 C -0.164 4.164 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.209 4.209 21 C -0.169 4.169 22 N 0.553 4.447 23 O -0.415 6.415 24 O -0.301 6.301 25 C -0.041 4.041 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.185 0.815 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.721 1.971 -8.794 19.881 hybrid contribution -0.963 0.345 0.777 1.285 sum -18.684 2.316 -8.018 20.463 Atomic orbital electron populations 1.20687 0.88796 1.03677 1.02984 1.20849 0.98335 0.92487 1.04719 1.23100 0.89918 0.98103 0.89537 1.68588 1.08227 1.29415 1.14337 1.20241 0.93144 0.85815 0.84905 1.60680 0.97856 1.54620 1.05704 1.20290 0.97443 0.91379 0.86088 1.20904 0.90426 1.26621 1.16318 0.89301 1.24794 0.94689 0.96378 0.96935 1.69870 1.07682 1.43225 1.32497 0.87021 0.80161 0.81749 0.81877 1.20329 1.20978 1.19098 1.22529 1.01001 0.91368 0.85103 1.22704 0.99169 0.98920 0.95640 1.22295 1.01484 0.94948 0.97070 1.22038 1.00436 0.96845 0.96150 1.23161 1.03577 0.97955 0.96207 1.22075 0.92066 0.85949 1.16777 1.43174 1.01802 1.01292 0.98471 1.94470 1.73776 1.16170 1.57132 1.94738 0.93726 1.93719 1.47957 1.21328 0.90842 1.00550 0.91376 0.90550 0.90892 0.90643 0.81527 0.96540 0.96662 0.92586 0.86899 0.90898 0.93458 0.91206 0.92386 0.92877 0.92212 0.88321 0.91244 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.03 36.01 0.36 -0.28 16 2 C -0.16 -1.65 5.90 -104.46 -0.62 -2.27 16 3 C 0.15 1.78 10.85 -17.57 -0.19 1.59 16 4 N -0.49 -7.91 7.11 -12.43 -0.09 -8.00 16 5 C 0.39 7.06 3.43 -155.00 -0.53 6.52 16 6 N -0.47 -9.76 2.48 -165.13 -0.41 -10.17 16 7 C 0.17 4.14 3.26 -4.98 -0.02 4.12 16 8 C -0.50 -14.06 9.24 -34.44 -0.32 -14.38 16 9 H 0.09 2.70 7.74 -52.49 -0.41 2.29 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 12 Si 0.86 21.33 27.47 -169.99 -4.67 16.67 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 16 C 0.11 2.00 2.87 -66.06 -0.19 1.81 16 17 C -0.13 -2.01 6.20 -24.74 -0.15 -2.16 16 18 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 19 C -0.12 -1.62 6.80 -25.61 -0.17 -1.79 16 20 C -0.17 -2.93 4.77 -25.61 -0.12 -3.05 16 21 C -0.08 -1.37 6.27 -79.60 -0.50 -1.87 16 22 N 0.03 0.57 4.45 34.13 0.15 0.73 16 23 O -0.22 -4.06 18.52 -29.46 -0.55 -4.61 16 24 O -0.06 -1.37 17.14 -29.46 -0.50 -1.88 16 25 C -0.01 -0.18 9.35 -39.32 -0.37 -0.55 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.02 0.40 5.40 -51.93 -0.28 0.12 16 31 H 0.02 0.39 7.41 -51.93 -0.38 0.00 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.11 2.34 7.50 -51.93 -0.39 1.95 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.77 5.96 -51.93 -0.31 0.46 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.76 4.60 -51.93 -0.24 1.52 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.16 1.68 7.69 -52.49 -0.40 1.28 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -31.80 339.01 -9.07 -40.88 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.80 Total: -0.37 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.09 Total: -12.07 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.43 Total: -43.73 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -1.05 Total: -6.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.80 -9.07 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.124 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds