Wall clock time and date at job start Tue Mar 31 2020 10:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38064 * 120.33249 * 2 1 4 4 N 1.31948 * 120.85398 * 180.02562 * 3 2 1 5 5 C 1.32418 * 121.62362 * 0.02562 * 4 3 2 6 6 N 1.39015 * 119.70791 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99678 * 55.73383 * 6 5 4 8 8 C 1.50702 * 109.47069 * 164.72228 * 7 6 5 9 9 H 1.07998 * 119.99621 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00032 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00249 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00165 * 359.97438 * 10 8 7 13 13 H 1.48491 * 109.47401 * 89.99934 * 12 10 8 14 14 H 1.48509 * 109.46948 * 210.00074 * 12 10 8 15 15 H 1.48501 * 109.46878 * 329.99819 * 12 10 8 16 16 C 1.46891 * 110.99672 * 291.77564 * 6 5 4 17 17 C 1.54887 * 110.48963 * 313.34203 * 16 6 5 18 18 C 1.54886 * 102.75119 * 156.62494 * 17 16 6 19 19 C 1.54270 * 104.19492 * 322.05378 * 18 17 16 20 20 C 1.53878 * 106.59476 * 23.61218 * 19 18 17 21 21 C 1.39103 * 120.58795 * 0.27115 * 5 4 3 22 22 N 1.48003 * 120.44834 * 179.70740 * 21 5 4 23 23 O 1.21801 * 119.99644 * 181.09555 * 22 21 5 24 24 O 1.21799 * 120.00244 * 1.09543 * 22 21 5 25 25 C 1.38335 * 119.09897 * 359.45960 * 21 5 4 26 26 H 1.08998 * 109.46896 * 90.00287 * 1 2 3 27 27 H 1.08997 * 109.46903 * 209.99762 * 1 2 3 28 28 H 1.08993 * 109.47225 * 330.00036 * 1 2 3 29 29 H 1.08003 * 119.57606 * 0.03895 * 3 2 1 30 30 H 1.09001 * 109.46701 * 284.71329 * 7 6 5 31 31 H 1.08995 * 109.47702 * 44.71581 * 7 6 5 32 32 H 0.96994 * 120.00701 * 180.02562 * 11 10 8 33 33 H 1.09003 * 110.53842 * 190.72771 * 16 6 5 34 34 H 1.09007 * 110.75427 * 274.93491 * 17 16 6 35 35 H 1.09000 * 110.75905 * 38.30432 * 17 16 6 36 36 H 1.08993 * 110.49149 * 80.73001 * 18 17 16 37 37 H 1.08999 * 110.49223 * 203.38267 * 18 17 16 38 38 H 1.08994 * 110.03675 * 264.32888 * 19 18 17 39 39 H 1.09004 * 110.07394 * 142.91564 * 19 18 17 40 40 H 1.08997 * 110.03451 * 240.71310 * 20 19 18 41 41 H 1.09006 * 110.07083 * 119.30760 * 20 19 18 42 42 H 1.07999 * 120.75242 * 180.26495 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2036 -0.0005 5 6 4.2282 0.0825 -0.0015 6 7 5.6171 0.1416 -0.0026 7 6 6.1110 0.9349 1.1308 8 6 7.5832 0.6753 1.3220 9 1 8.1000 -0.0107 0.6674 10 6 8.2701 1.3136 2.3327 11 7 9.5548 1.0867 2.4999 12 14 7.3763 2.5009 3.4645 13 1 6.8398 1.7604 4.6345 14 1 8.3220 3.5464 3.9316 15 1 6.2568 3.1398 2.7272 16 6 6.1204 0.6728 -1.2763 17 6 5.4128 -0.0171 -2.4689 18 6 5.5752 1.0190 -3.6086 19 6 5.4005 2.3824 -2.9082 20 6 5.7472 2.1622 -1.4252 21 6 3.5910 -1.1540 -0.0078 22 7 4.3815 -2.4052 -0.0154 23 8 3.8151 -3.4832 -0.0410 24 8 5.5984 -2.3569 0.0039 25 6 2.2083 -1.1983 -0.0015 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6628 2.1261 0.0006 30 1 5.9522 1.9943 0.9293 31 1 5.5718 0.6522 2.0348 32 1 10.0380 1.5355 3.2112 33 1 7.2002 0.5413 -1.3455 34 1 5.9098 -0.9531 -2.7240 35 1 4.3589 -0.1860 -2.2476 36 1 6.5669 0.9435 -4.0544 37 1 4.8038 0.8776 -4.3656 38 1 4.3693 2.7221 -3.0040 39 1 6.0775 3.1168 -3.3448 40 1 4.8843 2.3951 -0.8014 41 1 6.5926 2.7892 -1.1416 42 1 1.6861 -2.1436 -0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:53 Heat of formation + Delta-G solvation = 35.643132 kcal Electronic energy + Delta-G solvation = -26674.423198 eV Core-core repulsion = 23043.734878 eV Total energy + Delta-G solvation = -3630.688321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.26699 -41.96858 -39.75113 -37.43566 -36.58675 -34.91887 -34.30618 -33.41473 -30.35291 -29.46615 -28.67001 -27.86672 -26.76558 -24.81418 -23.47820 -23.01047 -21.50264 -20.98444 -19.82567 -19.59807 -18.88563 -18.51220 -17.96468 -17.71188 -17.38378 -16.51947 -16.07260 -15.66852 -15.24775 -14.89121 -14.63479 -14.58977 -14.22515 -14.16793 -13.93819 -13.47927 -13.17648 -13.13176 -12.94210 -12.63768 -12.56464 -12.27469 -12.13644 -12.09595 -12.02250 -12.00390 -11.88622 -11.74662 -11.61112 -11.54932 -11.40380 -10.81944 -10.61479 -10.11160 -9.39826 -8.29937 -6.33117 -1.25647 -0.28521 0.30208 0.47978 1.27885 1.28967 1.39850 2.22670 2.29189 2.44376 3.01601 3.13265 3.31565 3.48470 3.56684 3.64632 3.74042 3.82392 4.00603 4.26340 4.38415 4.42860 4.50496 4.54505 4.59596 4.61093 4.73304 4.84265 4.86046 4.88530 4.95187 5.01903 5.03730 5.12737 5.20683 5.29348 5.36910 5.40122 5.44617 5.48578 5.85698 6.13439 6.44366 6.52491 6.67445 6.73667 7.27984 8.86763 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.006263 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.888731 B = 4469.498668 C = 4759.741897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.128 4.128 3 C 0.156 3.844 4 N -0.513 5.513 5 C 0.364 3.636 6 N -0.485 5.485 7 C 0.193 3.807 8 C -0.509 4.509 9 H 0.041 0.959 10 C 0.015 3.985 11 N -0.942 5.942 12 Si 0.937 3.063 13 H -0.272 1.272 14 H -0.275 1.275 15 H -0.249 1.249 16 C 0.100 3.900 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.166 4.166 21 C -0.099 4.099 22 N 0.036 4.964 23 O -0.179 6.179 24 O -0.159 6.159 25 C -0.015 4.015 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.213 0.787 30 H 0.018 0.982 31 H 0.003 0.997 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.559 2.851 -9.609 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.003 4.003 4 N -0.226 5.226 5 C 0.135 3.865 6 N -0.207 5.207 7 C 0.068 3.932 8 C -0.547 4.547 9 H 0.059 0.941 10 C -0.183 4.183 11 N -0.582 5.582 12 Si 0.760 3.240 13 H -0.197 1.197 14 H -0.200 1.200 15 H -0.173 1.173 16 C -0.006 4.006 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.205 4.205 21 C -0.188 4.188 22 N 0.552 4.448 23 O -0.391 6.391 24 O -0.374 6.374 25 C -0.041 4.041 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.230 0.770 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.114 3.782 -9.434 25.250 hybrid contribution 0.472 -0.322 0.917 1.081 sum -22.642 3.460 -8.517 24.437 Atomic orbital electron populations 1.20878 0.84834 1.05493 1.04790 1.21376 1.00615 0.90697 1.00424 1.23934 0.88370 1.00635 0.87319 1.68488 1.10550 1.28330 1.15196 1.19943 0.91755 0.87026 0.87804 1.60301 1.00817 1.54404 1.05210 1.19827 0.94423 0.91706 0.87259 1.21067 0.92833 1.25377 1.15439 0.94111 1.25705 0.95442 0.98425 0.98715 1.70032 1.09587 1.44950 1.33669 0.85870 0.79345 0.79304 0.79439 1.19747 1.19979 1.17283 1.22460 0.99012 0.93314 0.85833 1.22578 0.98547 0.98882 0.95263 1.22298 1.02709 0.93517 0.96470 1.21992 1.01866 0.97339 0.93330 1.23081 1.02452 0.95912 0.99032 1.22252 0.93331 0.83937 1.19231 1.43579 1.01721 1.02200 0.97322 1.94390 1.73349 1.17396 1.53978 1.94781 0.95107 1.94270 1.53261 1.21776 0.88750 1.02896 0.90720 0.88438 0.89677 0.88358 0.77041 0.96437 0.97862 0.92333 0.91218 0.92333 0.93142 0.90958 0.89578 0.90836 0.91027 0.88283 0.93749 0.79872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.03 71.24 0.71 0.16 16 2 C -0.13 -1.96 5.90 -19.76 -0.12 -2.07 16 3 C 0.16 2.88 10.85 84.63 0.92 3.80 16 4 N -0.51 -15.35 7.11 -193.25 -1.37 -16.73 16 5 C 0.36 13.24 3.43 133.05 0.46 13.70 16 6 N -0.49 -21.64 2.48 -676.34 -1.67 -23.32 16 7 C 0.19 9.79 3.26 85.56 0.28 10.07 16 8 C -0.51 -30.69 9.24 25.60 0.24 -30.45 16 9 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 10 C 0.01 0.90 5.47 84.65 0.46 1.36 16 11 N -0.94 -60.31 13.96 21.44 0.30 -60.01 16 12 Si 0.94 45.25 27.47 68.60 1.88 47.13 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 16 C 0.10 4.05 2.87 45.99 0.13 4.19 16 17 C -0.11 -3.76 6.20 31.88 0.20 -3.57 16 18 C -0.11 -2.85 6.83 31.67 0.22 -2.63 16 19 C -0.11 -2.79 6.80 31.32 0.21 -2.58 16 20 C -0.17 -5.82 4.77 31.32 0.15 -5.67 16 21 C -0.10 -3.31 6.27 36.61 0.23 -3.08 16 22 N 0.04 1.42 4.45 -45.92 -0.20 1.21 16 23 O -0.18 -6.57 18.52 18.88 0.35 -6.22 16 24 O -0.16 -7.55 17.14 18.89 0.32 -7.22 16 25 C -0.02 -0.33 9.35 22.44 0.21 -0.12 16 26 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 28 H 0.10 0.21 8.09 -2.39 -0.02 0.19 16 29 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 30 H 0.02 0.89 5.40 -2.39 -0.01 0.88 16 31 H 0.00 0.17 7.41 -2.39 -0.02 0.16 16 32 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.07 3.30 7.50 -2.39 -0.02 3.28 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.05 1.62 5.96 -2.39 -0.01 1.61 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.10 3.48 4.60 -2.39 -0.01 3.47 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.18 3.07 7.69 -2.91 -0.02 3.05 16 Total: -1.00 -78.10 339.01 4.88 -73.22 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.98 Total: 8.84 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.30 Total: -16.91 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -2.95 Total: -98.84 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.67 Total: -13.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -78.10 4.88 -73.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.865 kcal (2) G-P(sol) polarization free energy of solvation -78.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds