Wall clock time and date at job start Tue Mar 31 2020 08:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00031 * 2 1 4 4 H 1.48502 * 109.46788 * 239.99750 * 3 2 1 5 5 H 1.48499 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47344 * 119.99881 * 3 2 1 7 7 C 1.37878 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47460 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47501 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99867 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00606 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64208 * 359.96275 * 13 11 10 15 15 C 1.54368 * 107.28655 * 178.93981 * 14 13 11 16 16 C 1.55149 * 102.92344 * 337.86208 * 15 14 13 17 17 H 1.08996 * 111.00609 * 277.36339 * 16 15 14 18 18 C 1.53000 * 111.00888 * 153.54387 * 16 15 14 19 19 C 1.50703 * 109.46912 * 69.58278 * 18 16 15 20 20 C 1.38248 * 119.97052 * 269.72758 * 19 18 16 21 21 C 1.38206 * 120.02070 * 179.72413 * 20 19 18 22 22 C 1.38459 * 119.97516 * 0.57388 * 21 20 19 23 23 F 1.35092 * 120.02804 * 179.67826 * 22 21 20 24 24 C 1.38466 * 119.94783 * 359.69871 * 22 21 20 25 25 C 1.38201 * 119.97134 * 0.02562 * 24 22 21 26 26 C 1.47417 * 125.65176 * 180.02562 * 13 11 10 27 27 H 0.96994 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47156 * 59.99497 * 9 7 2 29 29 H 1.09005 * 109.47152 * 299.99601 * 9 7 2 30 30 H 1.09003 * 109.46997 * 59.99827 * 10 9 7 31 31 H 1.08997 * 109.46911 * 299.99788 * 10 9 7 32 32 H 1.08997 * 109.88569 * 298.39218 * 14 13 11 33 33 H 1.09000 * 109.88592 * 59.39931 * 14 13 11 34 34 H 1.09001 * 110.75874 * 219.49283 * 15 14 13 35 35 H 1.09004 * 110.70215 * 96.20949 * 15 14 13 36 36 H 1.09002 * 109.47398 * 189.58355 * 18 16 15 37 37 H 1.09001 * 109.47194 * 309.58536 * 18 16 15 38 38 H 1.07993 * 119.98843 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.00870 * 180.25174 * 21 20 19 40 40 H 1.07995 * 120.01164 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.98533 * 179.97438 * 25 24 22 42 42 H 1.09001 * 110.36882 * 85.25979 * 26 13 11 43 43 H 1.08994 * 110.37072 * 322.93045 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 3.6288 -6.2790 -0.0011 15 6 3.9404 -7.7907 0.0264 16 6 2.6403 -8.4023 0.6119 17 1 2.6362 -8.3429 1.7002 18 6 2.4546 -9.8471 0.1438 19 6 3.4958 -10.7228 0.7920 20 6 4.7125 -10.9265 0.1680 21 6 5.6703 -11.7248 0.7642 22 6 5.4064 -12.3303 1.9812 23 9 6.3393 -13.1160 2.5618 24 6 4.1852 -12.1300 2.6024 25 6 3.2312 -11.3267 2.0070 26 6 1.5579 -7.4774 0.0008 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 4.0446 -5.8309 -0.9035 33 1 4.0503 -5.7959 0.8805 34 1 4.7907 -7.9982 0.6760 35 1 4.1230 -8.1649 -0.9810 36 1 1.4607 -10.1953 0.4251 37 1 2.5631 -9.8948 -0.9397 38 1 4.9161 -10.4584 -0.7836 39 1 6.6222 -11.8805 0.2786 40 1 3.9781 -12.6021 3.5514 41 1 2.2785 -11.1707 2.4912 42 1 1.3242 -7.7881 -1.0176 43 1 0.6589 -7.4870 0.6170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291754314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:22 Heat of formation + Delta-G solvation = -76.289363 kcal Electronic energy + Delta-G solvation = -23662.976256 eV Core-core repulsion = 20007.514217 eV Total energy + Delta-G solvation = -3655.462040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.23513 -40.14166 -39.29274 -37.34550 -33.83858 -33.44670 -31.55888 -31.19021 -30.40635 -29.32690 -26.63414 -25.19633 -23.56267 -23.10023 -22.02012 -21.17473 -20.41235 -18.64622 -18.02553 -17.02443 -16.76977 -16.45493 -15.94969 -15.81316 -15.65295 -14.94372 -14.49608 -14.39235 -14.26064 -14.03217 -13.93449 -13.75980 -13.49592 -12.94342 -12.63459 -12.48172 -12.26304 -12.08976 -12.06910 -11.82984 -11.44749 -11.23570 -11.10096 -10.96063 -10.90796 -10.83355 -10.60745 -9.93461 -9.64635 -9.51525 -9.18680 -9.03831 -8.88780 -8.39057 -8.29960 -5.95014 -3.99512 0.73218 0.82370 3.13512 3.24076 3.32256 3.34939 3.39710 3.41805 3.88626 4.13854 4.27627 4.42812 4.47608 4.49938 4.53343 4.73511 4.85028 4.86336 5.13384 5.16262 5.20203 5.36334 5.39641 5.43923 5.48314 5.53477 5.61743 5.68157 5.71743 5.72796 5.82692 5.83762 5.90130 6.04474 6.17435 6.24261 6.25860 6.49171 6.56713 6.90599 7.74990 7.86649 7.87285 8.08255 8.39469 8.75478 9.08672 9.63781 11.15928 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.002165 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.461180 B =12930.111741 C =13390.125385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.526 3.474 12 O -0.534 6.534 13 N -0.631 5.631 14 C 0.103 3.897 15 C -0.126 4.126 16 C -0.097 4.097 17 H 0.086 0.914 18 C -0.070 4.070 19 C -0.085 4.085 20 C -0.086 4.086 21 C -0.152 4.152 22 C 0.090 3.910 23 F -0.143 7.143 24 C -0.152 4.152 25 C -0.088 4.088 26 C 0.110 3.890 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.391 -27.036 1.508 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.317 3.683 12 O -0.409 6.409 13 N -0.369 5.369 14 C -0.021 4.021 15 C -0.164 4.164 16 C -0.116 4.116 17 H 0.105 0.895 18 C -0.108 4.108 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.171 4.171 22 C 0.071 3.929 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.106 4.106 26 C -0.013 4.013 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.546 -26.827 1.526 28.866 hybrid contribution 0.805 0.712 0.166 1.088 sum 11.351 -26.115 1.693 28.525 Atomic orbital electron populations 1.69985 1.06051 1.26694 1.50101 1.25029 0.94835 0.99217 0.95316 0.86646 0.79541 0.83163 0.78540 1.20251 1.21283 1.20247 1.21178 0.92874 0.91001 1.51502 0.92672 1.18909 0.93188 0.89370 0.98604 1.21846 1.00622 0.91605 1.02316 1.21327 0.88117 0.84493 0.74381 1.90674 1.14285 1.86971 1.48965 1.48716 1.06781 1.05529 1.75850 1.21967 0.81531 0.96484 1.02092 1.22739 0.97766 0.94140 1.01717 1.22378 0.95291 0.92977 1.00926 0.89521 1.20552 0.97367 0.92456 1.00435 1.19939 0.95585 0.97892 0.95151 1.20961 0.92349 0.97092 0.99980 1.21164 1.01268 0.99666 0.94959 1.17754 0.87414 0.94290 0.93485 1.91498 1.64417 1.72147 1.84069 1.21163 0.92832 1.01578 1.01457 1.20968 0.99204 0.95684 0.94720 1.22151 0.96401 0.82218 1.00562 0.92890 0.95839 0.95838 0.90365 0.90351 0.91361 0.91382 0.90147 0.90557 0.90156 0.90210 0.84908 0.84801 0.84823 0.84908 0.91836 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.12 -2.60 4.83 -27.89 -0.13 -2.73 16 11 C 0.53 10.57 7.85 -10.99 -0.09 10.49 16 12 O -0.53 -13.01 16.24 5.55 0.09 -12.92 16 13 N -0.63 -9.40 3.33 -170.49 -0.57 -9.97 16 14 C 0.10 1.12 6.49 -3.04 -0.02 1.10 16 15 C -0.13 -0.97 5.60 -24.88 -0.14 -1.11 16 16 C -0.10 -0.79 3.02 -88.46 -0.27 -1.05 16 17 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.07 -0.43 4.87 -27.88 -0.14 -0.57 16 19 C -0.09 -0.56 4.94 -104.62 -0.52 -1.07 16 20 C -0.09 -0.54 9.11 -39.59 -0.36 -0.90 16 21 C -0.15 -1.06 10.03 -39.51 -0.40 -1.45 16 22 C 0.09 0.73 7.30 -39.42 -0.29 0.45 16 23 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 24 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 25 C -0.09 -0.58 9.70 -39.60 -0.38 -0.96 16 26 C 0.11 1.30 6.38 -2.52 -0.02 1.29 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.50 7.97 -51.93 -0.41 0.08 16 36 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.08 0.44 7.98 -51.93 -0.41 0.03 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 43 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -34.81 363.38 -9.61 -44.42 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.69 Total: -4.63 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.67 Total: -10.95 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.17 Total: -36.85 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.81 -9.61 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291754314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.874 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds