Wall clock time and date at job start Tue Mar 31 2020 08:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46796 * 2 1 4 4 C 1.52990 * 109.47523 * 120.00005 * 2 1 3 5 5 N 1.46506 * 109.47247 * 176.75735 * 4 2 1 6 6 C 1.46500 * 120.00312 * 296.01845 * 5 4 2 7 7 C 1.50696 * 109.46861 * 278.80410 * 6 5 4 8 8 H 1.08001 * 120.00385 * 355.01077 * 7 6 5 9 9 C 1.37879 * 119.99903 * 174.73729 * 7 6 5 10 10 N 1.31515 * 119.99749 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00166 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46947 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47007 * 119.99567 * 11 9 7 14 14 H 1.48499 * 109.47194 * 240.00226 * 11 9 7 15 15 S 1.65607 * 119.99548 * 116.01504 * 5 4 2 16 16 O 1.42093 * 106.40259 * 23.54359 * 15 5 4 17 17 O 1.42094 * 106.39908 * 156.46436 * 15 5 4 18 18 N 1.65604 * 107.21729 * 270.00139 * 15 5 4 19 19 C 1.47080 * 120.88308 * 269.72696 * 18 15 5 20 20 C 1.52785 * 108.76197 * 231.12197 * 19 18 15 21 21 N 1.46896 * 109.42321 * 306.42012 * 20 19 18 22 22 C 1.46894 * 111.26519 * 62.96948 * 21 20 19 23 23 C 1.47082 * 120.88025 * 89.99832 * 18 15 5 24 24 H 1.09005 * 109.46922 * 299.99412 * 1 2 3 25 25 H 1.08995 * 109.47472 * 59.99999 * 1 2 3 26 26 H 1.09005 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46922 * 240.00588 * 2 1 3 28 28 H 1.08996 * 109.47387 * 304.88971 * 3 2 1 29 29 H 1.08997 * 109.47284 * 64.89244 * 3 2 1 30 30 H 1.09001 * 109.47244 * 184.89053 * 3 2 1 31 31 H 1.08999 * 109.47278 * 56.76498 * 4 2 1 32 32 H 1.08999 * 109.47404 * 296.76438 * 4 2 1 33 33 H 1.08995 * 109.47254 * 158.80336 * 6 5 4 34 34 H 1.08999 * 109.46807 * 38.80477 * 6 5 4 35 35 H 0.97003 * 119.99643 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.62456 * 350.88881 * 19 18 15 37 37 H 1.08996 * 109.62904 * 111.46992 * 19 18 15 38 38 H 1.09001 * 109.56440 * 186.36607 * 20 19 18 39 39 H 1.09000 * 109.36062 * 66.35328 * 20 19 18 40 40 H 1.00903 * 110.99525 * 187.11429 * 21 20 19 41 41 H 1.09005 * 109.48777 * 176.93293 * 22 21 20 42 42 H 1.08998 * 109.51902 * 56.87043 * 22 21 20 43 43 H 1.09000 * 109.63116 * 248.52548 * 23 18 15 44 44 H 1.08996 * 109.62847 * 9.11293 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5030 -0.7892 1.2106 6 6 4.1735 -1.5506 0.1538 7 6 4.1779 -3.0137 0.5144 8 1 3.7993 -3.3347 1.4737 9 6 4.6600 -3.9434 -0.3824 10 7 5.1155 -3.5532 -1.5529 11 14 4.6648 -5.7572 0.0643 12 1 4.1034 -5.9326 1.4279 13 1 3.8375 -6.5098 -0.9126 14 1 6.0577 -6.2710 0.0332 15 16 4.3989 -0.0052 2.3619 16 8 3.5528 0.1478 3.4932 17 8 5.6541 -0.6690 2.4143 18 7 4.7002 1.5207 1.7934 19 6 5.9019 1.8051 0.9944 20 6 6.6220 3.0083 1.6011 21 7 5.6801 4.1285 1.7275 22 6 4.5832 3.8009 2.6479 23 6 3.7763 2.6289 2.0791 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6068 1.9810 -0.8429 29 1 1.7499 1.9304 0.9305 30 1 3.1264 1.4439 -0.0876 31 1 1.6302 -1.7308 1.2786 32 1 1.7249 -0.1750 2.1382 33 1 5.1998 -1.1993 0.0481 34 1 3.6426 -1.4100 -0.7878 35 1 5.4543 -4.2073 -2.1840 36 1 6.5637 0.9390 1.0077 37 1 5.6138 2.0337 -0.0316 38 1 7.4507 3.3009 0.9563 39 1 7.0044 2.7416 2.5863 40 1 6.1559 4.9700 2.0169 41 1 3.9331 4.6684 2.7624 42 1 4.9932 3.5230 3.6189 43 1 3.2799 2.9383 1.1593 44 1 3.0334 2.3073 2.8091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:14 Heat of formation + Delta-G solvation = -72.559354 kcal Electronic energy + Delta-G solvation = -25730.510894 eV Core-core repulsion = 22230.574512 eV Total energy + Delta-G solvation = -3499.936381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.47675 -37.15390 -36.63721 -35.19555 -33.73724 -33.32209 -32.07450 -31.10526 -27.42489 -26.95955 -25.70292 -24.94605 -23.61136 -22.46006 -20.74897 -19.37880 -18.50013 -17.59176 -16.84981 -16.34997 -15.82237 -15.64602 -14.91424 -14.81158 -14.72273 -14.41580 -14.20988 -14.04446 -13.68050 -13.20240 -12.56410 -12.42124 -12.29148 -12.18945 -12.02784 -11.84312 -11.69940 -11.61369 -11.28013 -11.24250 -11.09768 -11.04469 -10.95814 -10.72998 -10.66554 -10.51338 -10.45796 -10.21648 -9.88227 -9.67120 -9.06552 -8.46920 -8.39368 -7.97732 -6.05588 -4.08901 1.17838 3.30949 3.38641 3.42272 3.45697 4.06551 4.10699 4.45209 4.79601 4.82424 5.11018 5.21386 5.21868 5.25797 5.29790 5.33984 5.36108 5.43834 5.48907 5.62927 5.71410 5.74244 5.85494 5.90431 6.02528 6.07057 6.10994 6.14192 6.22155 6.33522 6.38260 6.55703 6.64657 6.73821 6.82709 6.85949 7.22255 7.29469 7.46454 7.65098 7.92291 8.23349 8.94077 9.55959 11.02839 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.005921 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.084516 B = 4727.838490 C = 5528.501521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.155 4.155 4 C 0.132 3.868 5 N -0.988 5.988 6 C 0.257 3.743 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 S 2.777 3.223 16 O -0.997 6.997 17 O -0.966 6.966 18 N -1.011 6.011 19 C 0.123 3.877 20 C 0.047 3.953 21 N -0.686 5.686 22 C 0.045 3.955 23 C 0.115 3.885 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.341 0.659 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 15.479 3.602 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.212 4.212 4 C 0.006 3.994 5 N -0.829 5.829 6 C 0.136 3.864 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 S 2.787 3.213 16 O -0.981 6.981 17 O -0.950 6.950 18 N -0.850 5.850 19 C -0.003 4.003 20 C -0.084 4.084 21 N -0.318 5.318 22 C -0.086 4.086 23 C -0.011 4.011 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.158 0.842 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.101 0.899 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.604 14.844 3.719 15.721 hybrid contribution 0.431 -0.843 0.567 1.103 sum -3.174 14.001 4.286 14.983 Atomic orbital electron populations 1.21759 0.95409 1.01706 1.01129 1.21500 0.95064 0.96433 1.00552 1.22175 1.02022 0.96038 1.00947 1.21193 0.80205 1.01223 0.96827 1.57720 1.14278 1.63390 1.47479 1.19017 0.91832 0.90250 0.85349 1.21515 1.41261 0.91673 1.01993 0.92239 1.24918 0.95112 0.99155 0.94819 1.69929 1.42100 1.34319 1.07151 0.86487 0.77798 0.84904 0.78532 1.19691 1.20990 1.20862 1.02068 0.73425 0.72236 0.73572 1.93502 1.69030 1.86637 1.48975 1.93600 1.42639 1.72375 1.86387 1.58475 1.31732 1.25818 1.68998 1.21386 0.85929 0.98016 0.94931 1.22189 0.94490 0.91696 1.00017 1.60218 1.13125 1.05855 1.52569 1.22274 0.94138 0.98524 0.93624 1.21779 0.91614 0.86368 1.01323 0.93067 0.92969 0.92571 0.89839 0.93085 0.93022 0.91631 0.90735 0.90859 0.94802 0.94262 0.92803 0.88454 0.90845 0.89698 0.94765 0.84155 0.89968 0.94861 0.89923 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.42 16 2 C -0.12 -1.74 2.90 -90.62 -0.26 -2.00 16 3 C -0.15 -2.05 7.16 37.16 0.27 -1.78 16 4 C 0.13 2.33 5.22 -4.04 -0.02 2.31 16 5 N -0.99 -20.32 2.42 -115.67 -0.28 -20.60 16 6 C 0.26 6.33 5.06 -5.20 -0.03 6.30 16 7 C -0.52 -14.62 9.35 -34.44 -0.32 -14.94 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 S 2.78 55.65 6.11 -107.50 -0.66 54.99 16 16 O -1.00 -20.82 15.28 -57.18 -0.87 -21.69 16 17 O -0.97 -23.01 15.63 -57.18 -0.89 -23.91 16 18 N -1.01 -15.68 2.49 -113.49 -0.28 -15.96 16 19 C 0.12 1.76 6.64 -3.84 -0.03 1.74 16 20 C 0.05 0.54 6.68 -3.94 -0.03 0.52 16 21 N -0.69 -7.14 6.82 -113.77 -0.78 -7.91 16 22 C 0.05 0.49 6.69 -3.70 -0.02 0.46 16 23 C 0.12 1.46 4.84 -3.60 -0.02 1.44 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.45 6.73 -51.93 -0.35 1.10 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 30 H 0.06 0.95 5.97 -51.93 -0.31 0.64 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.20 6.86 -51.93 -0.36 0.85 16 33 H 0.03 0.88 7.48 -51.93 -0.39 0.50 16 34 H 0.04 0.98 6.62 -51.93 -0.34 0.64 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.10 1.55 6.93 -51.93 -0.36 1.19 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.34 2.76 8.90 -39.29 -0.35 2.41 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.97 5.33 -51.93 -0.28 0.69 16 44 H 0.09 1.16 6.91 -51.93 -0.36 0.80 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -32.58 347.76 -10.22 -42.80 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.20 Total: 1.11 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.22 Total: -5.73 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -0.60 Total: -69.58 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.77 Total: -45.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -0.66 Total: 54.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.58 -10.22 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.763 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds