Wall clock time and date at job start Tue Mar 31 2020 08:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 H 1.08991 * 109.24041 * 179.01909 * 3 2 1 5 5 C 1.50621 * 109.26892 * 298.51206 * 3 2 1 6 6 C 1.38735 * 118.43043 * 317.72037 * 5 3 2 7 7 C 1.38014 * 120.37442 * 180.46523 * 6 5 3 8 8 C 1.38254 * 119.87090 * 0.02562 * 7 6 5 9 9 C 1.38036 * 119.83091 * 359.91047 * 8 7 6 10 10 C 1.37828 * 121.84423 * 137.99549 * 5 3 2 11 11 C 1.50712 * 121.66047 * 359.19049 * 10 5 3 12 12 C 1.52904 * 109.94658 * 17.18335 * 11 10 5 13 13 N 1.46633 * 109.27098 * 59.52562 * 3 2 1 14 14 C 1.46902 * 110.99653 * 63.77457 * 13 3 2 15 15 C 1.52993 * 109.47045 * 58.48931 * 14 13 3 16 16 C 1.53004 * 109.47257 * 180.02562 * 15 14 13 17 17 S 1.81004 * 109.47138 * 179.97438 * 16 15 14 18 18 C 1.76197 * 99.99582 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00336 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99800 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99595 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47269 * 59.99810 * 22 20 18 24 24 H 1.48500 * 109.46747 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46779 * 299.99714 * 22 20 18 26 26 H 1.08998 * 109.47232 * 65.34683 * 1 2 3 27 27 H 1.08992 * 109.47599 * 185.35064 * 1 2 3 28 28 H 1.09006 * 109.47415 * 305.35485 * 1 2 3 29 29 H 1.08998 * 109.47373 * 239.99808 * 2 1 3 30 30 H 1.09005 * 109.46795 * 119.99606 * 2 1 3 31 31 H 1.08000 * 119.80988 * 0.48531 * 6 5 3 32 32 H 1.07997 * 120.06177 * 179.73235 * 7 6 5 33 33 H 1.08010 * 120.08532 * 179.88037 * 8 7 6 34 34 H 1.08000 * 119.82538 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.39869 * 137.33013 * 11 10 5 36 36 H 1.08999 * 109.39343 * 257.04170 * 11 10 5 37 37 H 1.08997 * 109.62612 * 69.23609 * 12 11 10 38 38 H 1.09003 * 109.62794 * 189.62623 * 12 11 10 39 39 H 1.09006 * 109.46399 * 178.48790 * 14 13 3 40 40 H 1.08996 * 109.47367 * 298.48303 * 14 13 3 41 41 H 1.09008 * 109.47131 * 299.99704 * 15 14 13 42 42 H 1.08996 * 109.47551 * 59.99485 * 15 14 13 43 43 H 1.09004 * 109.46279 * 299.99373 * 16 15 14 44 44 H 1.08996 * 109.47280 * 59.99296 * 16 15 14 45 45 H 0.97008 * 119.99858 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4381 0.0176 5 6 1.5659 2.1374 -1.2494 6 6 1.6198 1.4457 -2.4508 7 6 1.2046 2.0472 -3.6216 8 6 0.7325 3.3464 -3.5984 9 6 0.6769 4.0356 -2.4037 10 6 1.0909 3.4310 -1.2263 11 6 1.0022 4.2184 0.0557 12 6 1.8717 3.5649 1.1304 13 7 1.5396 2.1328 1.1930 14 6 2.0732 1.5215 2.4175 15 6 3.6020 1.5729 2.3887 16 6 4.1579 0.9357 3.6638 17 16 5.9666 0.9958 3.6293 18 6 6.3279 0.2198 5.1694 19 1 5.5234 -0.1226 5.8034 20 6 7.6465 0.0475 5.5672 21 7 8.6269 0.4643 4.7942 22 14 8.0295 -0.7759 7.1997 23 1 7.4711 -2.1518 7.2032 24 1 9.5011 -0.8378 7.3895 25 1 7.4210 0.0082 8.3043 26 1 -0.3633 0.4287 -0.9340 27 1 -0.3634 -1.0231 0.0958 28 1 -0.3634 0.5947 0.8382 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.9885 0.4308 -2.4699 32 1 1.2528 1.5055 -4.5546 33 1 0.4084 3.8211 -4.5129 34 1 0.3085 5.0507 -2.3858 35 1 1.3487 5.2368 -0.1202 36 1 -0.0336 4.2435 0.3942 37 1 2.9240 3.6859 0.8735 38 1 1.6742 4.0322 2.0952 39 1 1.7075 2.0694 3.2861 40 1 1.7456 0.4838 2.4782 41 1 3.9677 1.0251 1.5201 42 1 3.9297 2.6107 2.3280 43 1 3.7923 1.4832 4.5326 44 1 3.8303 -0.1021 3.7240 45 1 9.5485 0.3436 5.0721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:59 Heat of formation + Delta-G solvation = 9.281605 kcal Electronic energy + Delta-G solvation = -22704.988052 eV Core-core repulsion = 19619.449824 eV Total energy + Delta-G solvation = -3085.538228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62158 -37.91020 -34.49343 -33.82357 -32.43715 -31.08997 -30.57476 -28.84350 -26.37740 -25.58026 -24.53331 -23.29927 -22.73144 -21.37911 -20.83945 -18.69037 -17.48888 -17.02402 -16.09711 -15.79982 -15.11109 -14.81232 -14.76678 -14.54717 -14.45786 -13.96750 -13.82406 -13.49335 -13.32241 -12.91872 -12.66443 -12.40259 -12.28760 -12.13717 -11.70814 -11.59631 -11.50102 -11.46638 -11.25343 -11.04968 -10.97773 -10.82468 -10.71149 -10.53001 -10.45451 -10.16366 -9.71859 -9.05800 -8.87932 -8.62876 -8.36927 -8.09389 -6.54165 -6.23260 -3.93844 1.28989 1.29877 3.21386 3.22676 3.27318 3.57149 3.65967 3.87874 4.22015 4.53518 4.60462 4.79789 4.88803 5.02875 5.06329 5.12593 5.17461 5.19979 5.25144 5.29143 5.32430 5.40120 5.47346 5.52467 5.63432 5.66327 5.69154 5.77765 5.83861 5.89556 5.90563 5.94538 6.02040 6.07370 6.11134 6.18902 6.33836 6.39366 6.41207 6.45053 6.49838 6.54598 6.71074 6.90639 7.06789 7.14421 7.59668 8.35884 9.22908 10.84893 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.002800 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.692428 B = 9999.346109 C =10068.713633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.114 3.886 4 H 0.064 0.936 5 C -0.061 4.061 6 C -0.115 4.115 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.123 4.123 10 C -0.069 4.069 11 C -0.075 4.075 12 C 0.048 3.952 13 N -0.521 5.521 14 C 0.054 3.946 15 C -0.136 4.136 16 C -0.108 4.108 17 S -0.137 6.137 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 4.879 -14.154 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C 0.006 3.994 4 H 0.082 0.918 5 C -0.061 4.061 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.141 4.141 10 C -0.069 4.069 11 C -0.113 4.113 12 C -0.080 4.080 13 N -0.244 5.244 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.257 4.257 17 S 0.091 5.909 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.464 5.268 -14.942 23.580 hybrid contribution 0.452 -0.926 1.850 2.117 sum -17.013 4.341 -13.092 21.902 Atomic orbital electron populations 1.21648 0.95036 1.00644 1.02552 1.21623 0.97226 0.94185 1.02210 1.20549 0.97642 0.93674 0.87555 0.91828 1.19545 0.98662 0.93502 0.94394 1.21120 1.00255 0.99963 0.91995 1.21026 1.00000 0.95408 0.97934 1.21036 1.00556 0.94991 0.97731 1.21070 1.00906 0.99847 0.92273 1.19595 0.98391 0.93900 0.95011 1.20550 1.01220 0.97683 0.91805 1.22159 0.97854 0.88765 0.99257 1.62556 1.58011 1.02190 1.01648 1.22358 0.92879 1.00582 0.91666 1.21951 0.95807 1.01522 0.98256 1.23172 1.01991 1.01801 0.98760 1.84632 0.96662 1.79614 1.29998 1.22642 0.94785 1.44521 1.04473 0.91014 1.25018 0.95263 0.95461 0.98049 1.70016 0.99521 1.44289 1.36756 0.86228 0.77343 0.79731 0.82259 1.19921 1.20816 1.19926 0.93206 0.93750 0.91309 0.91648 0.91167 0.85956 0.86317 0.86423 0.86379 0.90635 0.90036 0.93802 0.90070 0.90529 0.90259 0.91452 0.91617 0.92163 0.92156 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.48 37.16 0.35 -1.15 16 2 C -0.11 -1.27 5.02 -26.73 -0.13 -1.41 16 3 C 0.11 1.38 1.75 -69.05 -0.12 1.26 16 4 H 0.06 0.88 6.02 -51.93 -0.31 0.56 16 5 C -0.06 -0.71 4.54 -104.63 -0.48 -1.19 16 6 C -0.12 -1.23 8.50 -39.48 -0.34 -1.57 16 7 C -0.13 -1.22 10.05 -39.66 -0.40 -1.61 16 8 C -0.13 -1.18 10.05 -39.65 -0.40 -1.58 16 9 C -0.12 -1.22 9.66 -39.49 -0.38 -1.60 16 10 C -0.07 -0.77 5.77 -104.60 -0.60 -1.37 16 11 C -0.08 -0.75 5.95 -27.93 -0.17 -0.92 16 12 C 0.05 0.54 4.84 -3.74 -0.02 0.52 16 13 N -0.52 -6.24 3.76 -228.15 -0.86 -7.10 16 14 C 0.05 0.70 5.01 -3.83 -0.02 0.68 16 15 C -0.14 -2.16 4.52 -26.73 -0.12 -2.28 16 16 C -0.11 -2.15 5.67 37.16 0.21 -1.94 16 17 S -0.14 -3.60 21.44 -107.50 -2.30 -5.90 16 18 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.05 0.54 6.99 -51.93 -0.36 0.18 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.79 7.42 -51.93 -0.39 0.41 16 29 H 0.06 0.66 6.40 -51.93 -0.33 0.33 16 30 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 31 H 0.12 1.17 6.39 -52.49 -0.34 0.84 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.55 7.15 -51.93 -0.37 0.18 16 38 H 0.08 0.86 7.94 -51.93 -0.41 0.44 16 39 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 40 H 0.08 1.01 6.46 -51.93 -0.34 0.67 16 41 H 0.07 1.11 6.28 -51.92 -0.33 0.79 16 42 H 0.07 1.08 6.86 -51.93 -0.36 0.72 16 43 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 44 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -31.01 358.52 -11.67 -42.68 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.21 Total: 0.53 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.41 Total: -26.78 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.12 Total: -32.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.30 Total: -5.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.01 -11.67 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.959 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds