Wall clock time and date at job start Tue Mar 31 2020 09:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.90748 * 2 1 4 4 C 1.54000 * 109.91457 * 238.90237 * 2 1 3 5 5 C 1.54598 * 105.22213 * 239.36966 * 4 2 1 6 6 H 1.09003 * 110.72246 * 96.45403 * 5 4 2 7 7 C 1.50709 * 110.72231 * 219.73162 * 5 4 2 8 8 C 1.38234 * 119.99846 * 59.73043 * 7 5 4 9 9 C 1.38226 * 119.99961 * 179.74275 * 8 7 5 10 10 C 1.38236 * 119.99918 * 0.52986 * 9 8 7 11 11 C 1.38235 * 119.99986 * 359.74462 * 10 9 8 12 12 C 1.38232 * 120.00139 * 359.97438 * 11 10 9 13 13 C 1.55092 * 102.84998 * 338.15300 * 5 4 2 14 14 N 1.47897 * 109.92057 * 121.31374 * 2 1 3 15 15 C 1.46906 * 110.99555 * 265.19650 * 14 2 1 16 16 C 1.53002 * 109.46812 * 189.99680 * 15 14 2 17 17 C 1.52999 * 109.46965 * 179.97438 * 16 15 14 18 18 S 1.81000 * 109.46794 * 180.02562 * 17 16 15 19 19 C 1.76206 * 99.99875 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99460 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00081 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00250 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99921 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46929 * 60.00048 * 23 21 19 25 25 H 1.48501 * 109.47121 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47193 * 300.00245 * 23 21 19 27 27 H 1.09008 * 109.47349 * 179.64616 * 1 2 3 28 28 H 1.08998 * 109.47422 * 299.64713 * 1 2 3 29 29 H 1.09006 * 109.47339 * 59.64714 * 1 2 3 30 30 H 1.09002 * 110.31026 * 358.33720 * 4 2 1 31 31 H 1.09000 * 110.30915 * 120.40749 * 4 2 1 32 32 H 1.08007 * 119.99917 * 359.97438 * 8 7 5 33 33 H 1.08002 * 120.00090 * 180.30094 * 9 8 7 34 34 H 1.08010 * 120.00030 * 179.77124 * 10 9 8 35 35 H 1.07997 * 119.99835 * 179.97438 * 11 10 9 36 36 H 1.07995 * 120.00193 * 179.97438 * 12 11 10 37 37 H 1.09003 * 110.59460 * 278.87433 * 13 5 4 38 38 H 1.08995 * 110.83386 * 155.84768 * 13 5 4 39 39 H 1.08992 * 109.47227 * 309.99424 * 15 14 2 40 40 H 1.09001 * 109.47017 * 69.99781 * 15 14 2 41 41 H 1.09002 * 109.47459 * 300.00165 * 16 15 14 42 42 H 1.08998 * 109.46986 * 59.99795 * 16 15 14 43 43 H 1.08992 * 109.47288 * 299.99875 * 17 16 15 44 44 H 1.09001 * 109.46803 * 60.00138 * 17 16 15 45 45 H 0.97001 * 119.99872 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0545 -0.7478 -1.2398 5 6 2.9074 -1.9104 -0.6820 6 1 2.3238 -2.8300 -0.6373 7 6 4.1504 -2.1057 -1.5114 8 6 5.0620 -1.0750 -1.6437 9 6 6.2047 -1.2558 -2.4001 10 6 6.4305 -2.4637 -3.0333 11 6 5.5161 -3.4925 -2.9057 12 6 4.3762 -3.3136 -2.1445 13 6 3.2681 -1.4199 0.7445 14 7 2.0339 -0.7227 1.1879 15 6 2.3212 0.2081 2.2876 16 6 3.0673 -0.5315 3.3999 17 6 3.3672 0.4380 4.5449 18 16 4.2505 -0.4368 5.8604 19 6 4.4605 0.8779 7.0146 20 1 4.0812 1.8629 6.7859 21 6 5.1140 0.6478 8.2173 22 7 5.5775 -0.5524 8.4954 23 14 5.3372 2.0418 9.4406 24 1 4.0067 2.5599 9.8488 25 1 6.0616 1.5401 10.6360 26 1 6.1211 3.1336 8.8094 27 1 -0.3634 -1.0277 -0.0063 28 1 -0.3634 0.5083 0.8931 29 1 -0.3634 0.5193 -0.8868 30 1 1.2227 -1.1367 -1.8271 31 1 2.6698 -0.0856 -1.8489 32 1 4.8832 -0.1296 -1.1529 33 1 6.9194 -0.4521 -2.4994 34 1 7.3216 -2.6038 -3.6273 35 1 5.6923 -4.4360 -3.4007 36 1 3.6616 -4.1172 -2.0451 37 1 4.1097 -0.7281 0.7106 38 1 3.4904 -2.2624 1.3994 39 1 2.9383 1.0271 1.9185 40 1 1.3856 0.6064 2.6802 41 1 2.4502 -1.3507 3.7691 42 1 4.0028 -0.9299 3.0072 43 1 3.9845 1.2568 4.1755 44 1 2.4318 0.8367 4.9377 45 1 6.0340 -0.7133 9.3360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:41 Heat of formation + Delta-G solvation = -9.835629 kcal Electronic energy + Delta-G solvation = -21944.628761 eV Core-core repulsion = 18858.261547 eV Total energy + Delta-G solvation = -3086.367213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04011 -39.40465 -35.80387 -34.61473 -33.66457 -31.85156 -31.75969 -29.94022 -27.86096 -26.83768 -25.98061 -24.17236 -23.38153 -22.10033 -21.14991 -20.76002 -19.52121 -17.99444 -16.90631 -16.86739 -16.69813 -16.45792 -16.05096 -15.57915 -15.43797 -15.25732 -14.74225 -14.40390 -14.24922 -14.09974 -13.87643 -13.73774 -13.49186 -13.31201 -13.13269 -12.93498 -12.70916 -12.62990 -12.54738 -12.25534 -12.14389 -12.05998 -11.98543 -11.64359 -11.53878 -11.40051 -11.30806 -11.14413 -10.34003 -9.80497 -9.57121 -9.38270 -8.68461 -8.38172 -6.15039 0.45530 0.52125 1.30085 1.40002 1.46734 1.72392 2.27265 2.86686 2.91484 2.95837 3.30786 3.59067 3.76527 3.86014 3.96936 4.06819 4.15693 4.16579 4.23261 4.29674 4.31071 4.34619 4.43524 4.47268 4.56938 4.65099 4.68170 4.74035 4.76602 4.84005 4.90181 4.95527 5.03004 5.08108 5.15699 5.16018 5.21963 5.23957 5.27376 5.38074 5.43737 5.60234 5.65076 5.75321 5.95472 6.09040 6.15010 6.16818 7.03597 8.71129 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002739 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.508549 B =10220.395395 C =11350.460916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.058 3.942 3 H 0.051 0.949 4 C -0.110 4.110 5 C -0.046 4.046 6 H 0.094 0.906 7 C -0.080 4.080 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.126 4.126 13 C 0.043 3.957 14 N -0.518 5.518 15 C 0.064 3.936 16 C -0.084 4.084 17 C -0.087 4.087 18 S -0.198 6.198 19 C -0.539 4.539 20 H 0.073 0.927 21 C 0.015 3.985 22 N -0.908 5.908 23 Si 0.994 3.006 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.264 1.264 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -1.528 -26.003 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.050 4.050 3 H 0.069 0.931 4 C -0.148 4.148 5 C -0.065 4.065 6 H 0.112 0.888 7 C -0.081 4.081 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.151 4.151 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.085 4.085 14 N -0.242 5.242 15 C -0.066 4.066 16 C -0.123 4.123 17 C -0.236 4.236 18 S 0.031 5.969 19 C -0.687 4.687 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.544 5.544 23 Si 0.816 3.184 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.189 1.189 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.188 -3.083 -25.594 26.296 hybrid contribution 0.625 2.494 0.844 2.706 sum -4.564 -0.589 -24.750 25.174 Atomic orbital electron populations 1.21729 0.93006 1.02351 1.01725 1.22505 0.97106 0.96048 0.89383 0.93139 1.22557 0.99653 0.96093 0.96508 1.21020 0.93348 0.99865 0.92256 0.88791 1.19841 0.95958 0.94341 0.97945 1.21114 0.94931 0.99021 0.99618 1.21398 0.97441 0.98447 0.97454 1.21459 1.00154 0.93396 1.00067 1.21454 0.94163 0.99843 0.98819 1.21320 0.98425 0.96979 0.97622 1.23316 0.91512 0.98231 0.95428 1.64763 1.26545 1.26500 1.06439 1.22175 0.99621 0.93423 0.91371 1.21202 1.00241 0.97477 0.93345 1.23143 1.01493 1.01069 0.97899 1.84655 1.74219 1.20865 1.17186 1.23007 1.43749 0.96818 1.05133 0.90920 1.26087 0.94053 0.99388 0.99486 1.70152 1.36587 1.22795 1.24870 0.85063 0.78924 0.77540 0.76876 1.18856 1.19886 1.18917 0.92138 0.93378 0.90869 0.89359 0.90998 0.86534 0.84920 0.84297 0.84085 0.84747 0.93989 0.90906 0.94527 0.90178 0.91582 0.92089 0.92161 0.91798 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.32 71.98 0.67 -1.53 16 2 C 0.06 1.11 3.08 45.06 0.14 1.25 16 3 H 0.05 0.99 7.58 -2.39 -0.02 0.98 16 4 C -0.11 -1.83 6.05 31.48 0.19 -1.64 16 5 C -0.05 -0.87 3.28 -10.28 -0.03 -0.90 16 6 H 0.09 1.71 7.96 -2.39 -0.02 1.69 16 7 C -0.08 -1.55 4.93 -19.86 -0.10 -1.65 16 8 C -0.13 -2.54 8.18 22.27 0.18 -2.36 16 9 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 10 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 11 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 12 C -0.13 -2.18 9.69 22.27 0.22 -1.96 16 13 C 0.04 1.02 4.49 86.70 0.39 1.41 16 14 N -0.52 -12.49 5.03 -857.77 -4.31 -16.80 16 15 C 0.06 1.73 5.03 86.30 0.43 2.16 16 16 C -0.08 -2.83 4.87 30.59 0.15 -2.68 16 17 C -0.09 -3.58 5.67 71.98 0.41 -3.18 16 18 S -0.20 -10.81 21.44 -56.49 -1.21 -12.02 16 19 C -0.54 -31.73 9.50 67.95 0.65 -31.08 16 20 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 21 C 0.01 0.85 5.49 84.86 0.47 1.32 16 22 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 23 Si 0.99 44.40 29.55 68.60 2.03 46.43 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.09 1.24 7.69 -2.39 -0.02 1.22 16 31 H 0.07 1.16 7.14 -2.39 -0.02 1.15 16 32 H 0.12 2.26 7.26 -2.91 -0.02 2.24 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.13 1.88 7.98 -2.91 -0.02 1.86 16 37 H 0.04 1.06 6.61 -2.39 -0.02 1.04 16 38 H 0.07 1.92 7.65 -2.39 -0.02 1.90 16 39 H 0.04 0.97 7.82 -2.39 -0.02 0.95 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.11 6.79 -2.39 -0.02 2.10 16 43 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 44 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -67.57 372.04 2.15 -65.42 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.94 Total: 18.88 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 4.43 Total: -46.56 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -4.03 Total: -72.14 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.21 Total: -12.02 kcal Total: -67.57 2.15 -65.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.579 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds