Wall clock time and date at job start Tue Mar 31 2020 09:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.42569 * 2 1 4 4 C 1.54916 * 110.37077 * 122.31097 * 2 1 3 5 5 C 1.55140 * 101.65192 * 155.89718 * 4 2 1 6 6 H 1.09002 * 110.70422 * 82.73098 * 5 4 2 7 7 C 1.50696 * 110.85373 * 205.89267 * 5 4 2 8 8 C 1.38236 * 120.00008 * 54.86707 * 7 5 4 9 9 C 1.38239 * 119.99914 * 179.76164 * 8 7 5 10 10 C 1.38236 * 119.99780 * 0.48772 * 9 8 7 11 11 C 1.38235 * 120.00198 * 359.79269 * 10 9 8 12 12 C 1.38237 * 120.00040 * 359.94878 * 11 10 9 13 13 C 1.54315 * 103.02014 * 324.34766 * 5 4 2 14 14 N 1.47443 * 107.23594 * 22.28042 * 13 5 4 15 15 C 1.46898 * 111.00006 * 123.25705 * 14 13 5 16 16 C 1.53006 * 109.47048 * 69.87391 * 15 14 13 17 17 C 1.52998 * 109.46976 * 179.97438 * 16 15 14 18 18 S 1.81002 * 109.47085 * 180.02562 * 17 16 15 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99977 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00273 * 23 21 19 27 27 H 1.08995 * 109.47686 * 182.31642 * 1 2 3 28 28 H 1.09006 * 109.47202 * 302.32158 * 1 2 3 29 29 H 1.09004 * 109.47205 * 62.31317 * 1 2 3 30 30 H 1.09001 * 110.98844 * 37.80717 * 4 2 1 31 31 H 1.09002 * 110.98970 * 273.98908 * 4 2 1 32 32 H 1.07997 * 120.00272 * 0.02562 * 8 7 5 33 33 H 1.07998 * 119.99910 * 180.25093 * 9 8 7 34 34 H 1.08005 * 119.99570 * 179.76195 * 10 9 8 35 35 H 1.07998 * 119.99728 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.99820 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.89056 * 262.87464 * 13 5 4 38 38 H 1.09003 * 110.02535 * 141.76808 * 13 5 4 39 39 H 1.09005 * 109.47137 * 309.87848 * 15 14 13 40 40 H 1.08996 * 109.47785 * 189.88118 * 15 14 13 41 41 H 1.09001 * 109.46310 * 60.00325 * 16 15 14 42 42 H 1.08996 * 109.46979 * 300.00106 * 16 15 14 43 43 H 1.09005 * 109.46968 * 60.00604 * 17 16 15 44 44 H 1.09000 * 109.47398 * 300.00482 * 17 16 15 45 45 H 0.97005 * 119.99878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7763 1.2274 5 6 3.4785 -1.1996 0.7360 6 1 4.1941 -0.3889 0.8731 7 6 3.9433 -2.4441 1.4475 8 6 3.1587 -3.5821 1.4336 9 6 3.5874 -4.7251 2.0821 10 6 4.7960 -4.7270 2.7531 11 6 5.5779 -3.5872 2.7719 12 6 5.1517 -2.4458 2.1188 13 6 3.2535 -1.4809 -0.7646 14 7 2.0446 -0.7410 -1.1712 15 6 2.3357 0.1715 -2.2850 16 6 2.6070 -0.6413 -3.5527 17 6 2.9095 0.3091 -4.7128 18 16 3.2297 -0.6523 -6.2126 19 6 3.5400 0.6543 -7.3533 20 1 3.4965 1.6815 -7.0226 21 6 3.8413 0.3633 -8.6766 22 7 3.8948 -0.8887 -9.0795 23 14 4.1696 1.7485 -9.8861 24 1 5.3320 2.5470 -9.4206 25 1 4.4661 1.1773 -11.2243 26 1 2.9722 2.6225 -9.9746 27 1 -0.3634 -1.0267 0.0415 28 1 -0.3634 0.5495 0.8685 29 1 -0.3634 0.4775 -0.9100 30 1 1.4513 -1.6488 1.4398 31 1 2.1387 -0.1271 2.1002 32 1 2.2128 -3.5795 0.9124 33 1 2.9763 -5.6155 2.0678 34 1 5.1291 -5.6189 3.2630 35 1 6.5220 -3.5886 3.2964 36 1 5.7628 -1.5554 2.1332 37 1 3.1055 -2.5490 -0.9236 38 1 4.1113 -1.1357 -1.3418 39 1 3.2131 0.7714 -2.0434 40 1 1.4812 0.8277 -2.4501 41 1 1.7296 -1.2412 -3.7942 42 1 3.4616 -1.2974 -3.3876 43 1 3.7868 0.9094 -4.4715 44 1 2.0546 0.9650 -4.8777 45 1 4.1051 -1.0920 -10.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:45 Heat of formation + Delta-G solvation = 5.259293 kcal Electronic energy + Delta-G solvation = -21843.389683 eV Core-core repulsion = 18757.677035 eV Total energy + Delta-G solvation = -3085.712649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23519 -38.60228 -34.56869 -32.79318 -32.40003 -31.10481 -30.81456 -29.10221 -26.01631 -25.63552 -24.78870 -23.21423 -22.57888 -21.00950 -20.33291 -19.77277 -17.41956 -17.15796 -16.49726 -15.62179 -15.15151 -15.05204 -14.78191 -14.53117 -14.09821 -13.84001 -13.80480 -13.53216 -13.18805 -13.13355 -12.74508 -12.72359 -12.26743 -12.25947 -11.80316 -11.47312 -11.43181 -11.35047 -11.19853 -11.13726 -11.02078 -10.81494 -10.77175 -10.70976 -10.57779 -10.28321 -9.49323 -9.11120 -9.02575 -8.85439 -8.29956 -8.26228 -6.49227 -6.19864 -3.89808 1.14728 1.20837 3.23249 3.24733 3.29320 3.55779 3.56825 3.92855 4.25380 4.34223 4.52212 4.61945 4.76824 4.79647 4.93918 4.97975 5.12535 5.15263 5.15808 5.29473 5.32422 5.35239 5.40365 5.41451 5.50335 5.59208 5.68206 5.72836 5.77264 5.81307 5.82723 5.85323 5.93477 5.98339 6.05288 6.14065 6.20862 6.28229 6.32372 6.39275 6.46067 6.64462 6.80105 6.81132 7.02382 7.15451 7.62743 8.39096 9.26094 10.88272 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.002525 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.032185 B =11088.232259 C =11945.083658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.053 0.947 4 C -0.114 4.114 5 C -0.073 4.073 6 H 0.081 0.919 7 C -0.067 4.067 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.127 4.127 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.051 3.949 14 N -0.523 5.523 15 C 0.056 3.944 16 C -0.092 4.092 17 C -0.112 4.112 18 S -0.132 6.132 19 C -0.516 4.516 20 H 0.071 0.929 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -2.812 25.990 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.071 0.929 4 C -0.152 4.152 5 C -0.093 4.093 6 H 0.099 0.901 7 C -0.067 4.067 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.145 4.145 11 C -0.138 4.138 12 C -0.136 4.136 13 C -0.077 4.077 14 N -0.247 5.247 15 C -0.073 4.073 16 C -0.131 4.131 17 C -0.261 4.261 18 S 0.096 5.904 19 C -0.665 4.665 20 H 0.089 0.911 21 C -0.138 4.138 22 N -0.506 5.506 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.086 -4.399 25.461 25.922 hybrid contribution 0.972 2.771 -0.418 2.966 sum -1.115 -1.628 25.043 25.120 Atomic orbital electron populations 1.21684 0.93853 1.02333 1.01315 1.22567 0.96208 0.95988 0.89441 0.92865 1.22874 0.94702 1.00455 0.97171 1.21420 0.97459 0.94992 0.95403 0.90060 1.19696 0.94555 0.94908 0.97544 1.21069 0.99990 0.92549 0.99296 1.21162 0.96553 0.98147 0.97773 1.21144 0.95127 0.98229 0.99987 1.21121 0.99710 0.93279 0.99702 1.21076 0.96050 0.98433 0.98052 1.22974 0.91991 1.00212 0.92537 1.63542 1.28516 1.26372 1.06309 1.22361 0.99685 0.94179 0.91121 1.21252 1.02416 0.97629 0.91768 1.23234 1.02356 1.01310 0.99238 1.84640 1.91503 1.13800 1.00445 1.22653 1.54909 0.93093 0.95811 0.91078 1.25014 0.94864 0.96380 0.97552 1.70019 1.45860 1.17368 1.17307 0.86232 0.78890 0.81092 0.79354 1.19985 1.20821 1.19938 0.91963 0.92721 0.92409 0.90173 0.90977 0.85668 0.86099 0.86309 0.86241 0.86271 0.90080 0.92065 0.94921 0.90971 0.90819 0.91799 0.92474 0.92205 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.59 37.15 0.36 -0.90 16 2 C 0.07 0.67 3.01 -66.18 -0.20 0.47 16 3 H 0.05 0.55 7.81 -51.93 -0.41 0.14 16 4 C -0.11 -1.02 5.88 -24.59 -0.14 -1.16 16 5 C -0.07 -0.71 3.16 -89.95 -0.28 -0.99 16 6 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 7 C -0.07 -0.65 4.93 -104.62 -0.52 -1.17 16 8 C -0.11 -1.07 8.14 -39.58 -0.32 -1.39 16 9 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 10 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 11 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 12 C -0.12 -1.09 9.68 -39.58 -0.38 -1.47 16 13 C 0.05 0.59 5.71 -2.84 -0.02 0.58 16 14 N -0.52 -6.46 4.81 -223.38 -1.07 -7.53 16 15 C 0.06 0.77 4.54 -3.82 -0.02 0.76 16 16 C -0.09 -1.56 5.25 -26.73 -0.14 -1.70 16 17 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 18 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 19 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.72 6.76 -51.93 -0.35 0.36 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 1.15 7.30 -52.49 -0.38 0.77 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.94 7.98 -52.49 -0.42 0.52 16 37 H 0.08 1.00 7.02 -51.93 -0.36 0.63 16 38 H 0.06 0.77 6.91 -51.93 -0.36 0.42 16 39 H 0.03 0.45 7.96 -51.93 -0.41 0.03 16 40 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.11 7.14 -51.93 -0.37 0.74 16 43 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 44 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -31.38 373.20 -12.16 -43.54 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.67 Total: -0.72 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -2.45 Total: -26.23 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.34 Total: -33.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.38 -12.16 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.804 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds