Wall clock time and date at job start Tue Mar 31 2020 09:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.42569 * 2 1 4 4 C 1.54916 * 110.37077 * 122.31097 * 2 1 3 5 5 C 1.55140 * 101.65192 * 155.89718 * 4 2 1 6 6 H 1.09002 * 110.70422 * 82.73098 * 5 4 2 7 7 C 1.50696 * 110.85373 * 205.89267 * 5 4 2 8 8 C 1.38236 * 120.00008 * 54.86707 * 7 5 4 9 9 C 1.38239 * 119.99914 * 179.76164 * 8 7 5 10 10 C 1.38236 * 119.99780 * 0.48772 * 9 8 7 11 11 C 1.38235 * 120.00198 * 359.79269 * 10 9 8 12 12 C 1.38237 * 120.00040 * 359.94878 * 11 10 9 13 13 C 1.54315 * 103.02014 * 324.34766 * 5 4 2 14 14 N 1.47443 * 107.23594 * 22.28042 * 13 5 4 15 15 C 1.46898 * 111.00006 * 123.25705 * 14 13 5 16 16 C 1.53006 * 109.47048 * 69.87391 * 15 14 13 17 17 C 1.52998 * 109.46976 * 179.97438 * 16 15 14 18 18 S 1.81002 * 109.47085 * 180.02562 * 17 16 15 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99977 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00273 * 23 21 19 27 27 H 1.08995 * 109.47686 * 182.31642 * 1 2 3 28 28 H 1.09006 * 109.47202 * 302.32158 * 1 2 3 29 29 H 1.09004 * 109.47205 * 62.31317 * 1 2 3 30 30 H 1.09001 * 110.98844 * 37.80717 * 4 2 1 31 31 H 1.09002 * 110.98970 * 273.98908 * 4 2 1 32 32 H 1.07997 * 120.00272 * 0.02562 * 8 7 5 33 33 H 1.07998 * 119.99910 * 180.25093 * 9 8 7 34 34 H 1.08005 * 119.99570 * 179.76195 * 10 9 8 35 35 H 1.07998 * 119.99728 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.99820 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.89056 * 262.87464 * 13 5 4 38 38 H 1.09003 * 110.02535 * 141.76808 * 13 5 4 39 39 H 1.09005 * 109.47137 * 309.87848 * 15 14 13 40 40 H 1.08996 * 109.47785 * 189.88118 * 15 14 13 41 41 H 1.09001 * 109.46310 * 60.00325 * 16 15 14 42 42 H 1.08996 * 109.46979 * 300.00106 * 16 15 14 43 43 H 1.09005 * 109.46968 * 60.00604 * 17 16 15 44 44 H 1.09000 * 109.47398 * 300.00482 * 17 16 15 45 45 H 0.97005 * 119.99878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7763 1.2274 5 6 3.4785 -1.1996 0.7360 6 1 4.1941 -0.3889 0.8731 7 6 3.9433 -2.4441 1.4475 8 6 3.1587 -3.5821 1.4336 9 6 3.5874 -4.7251 2.0821 10 6 4.7960 -4.7270 2.7531 11 6 5.5779 -3.5872 2.7719 12 6 5.1517 -2.4458 2.1188 13 6 3.2535 -1.4809 -0.7646 14 7 2.0446 -0.7410 -1.1712 15 6 2.3357 0.1715 -2.2850 16 6 2.6070 -0.6413 -3.5527 17 6 2.9095 0.3091 -4.7128 18 16 3.2297 -0.6523 -6.2126 19 6 3.5400 0.6543 -7.3533 20 1 3.4965 1.6815 -7.0226 21 6 3.8413 0.3633 -8.6766 22 7 3.8948 -0.8887 -9.0795 23 14 4.1696 1.7485 -9.8861 24 1 5.3320 2.5470 -9.4206 25 1 4.4661 1.1773 -11.2243 26 1 2.9722 2.6225 -9.9746 27 1 -0.3634 -1.0267 0.0415 28 1 -0.3634 0.5495 0.8685 29 1 -0.3634 0.4775 -0.9100 30 1 1.4513 -1.6488 1.4398 31 1 2.1387 -0.1271 2.1002 32 1 2.2128 -3.5795 0.9124 33 1 2.9763 -5.6155 2.0678 34 1 5.1291 -5.6189 3.2630 35 1 6.5220 -3.5886 3.2964 36 1 5.7628 -1.5554 2.1332 37 1 3.1055 -2.5490 -0.9236 38 1 4.1113 -1.1357 -1.3418 39 1 3.2131 0.7714 -2.0434 40 1 1.4812 0.8277 -2.4501 41 1 1.7296 -1.2412 -3.7942 42 1 3.4616 -1.2974 -3.3876 43 1 3.7868 0.9094 -4.4715 44 1 2.0546 0.9650 -4.8777 45 1 4.1051 -1.0920 -10.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:44 Heat of formation + Delta-G solvation = -10.630203 kcal Electronic energy + Delta-G solvation = -21844.078704 eV Core-core repulsion = 18757.677035 eV Total energy + Delta-G solvation = -3086.401669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02529 -39.38645 -35.74108 -34.60858 -33.63868 -31.88187 -31.75967 -29.91443 -27.85983 -26.85308 -25.99042 -24.07325 -23.32220 -22.17414 -21.18652 -20.65730 -19.53453 -17.85785 -17.42335 -16.90141 -16.62243 -16.15333 -16.05421 -15.68580 -15.42761 -15.01361 -14.66997 -14.49124 -14.23834 -14.07246 -13.85423 -13.74517 -13.46174 -13.23010 -13.06827 -12.93883 -12.84381 -12.61385 -12.43838 -12.28285 -12.16172 -12.05095 -11.99136 -11.63338 -11.57369 -11.46888 -11.29123 -11.13905 -10.32890 -9.78400 -9.55714 -9.26014 -8.67935 -8.37596 -6.14457 0.46854 0.53690 1.30457 1.40383 1.47180 1.73405 2.27967 2.87713 2.92909 2.96329 3.32188 3.56597 3.76001 3.80659 3.99547 4.08520 4.17434 4.20459 4.28046 4.29875 4.33785 4.38780 4.43055 4.45109 4.56946 4.67049 4.72630 4.73815 4.76900 4.84569 4.90607 4.95809 5.04231 5.09596 5.15667 5.19141 5.21018 5.28278 5.32732 5.38541 5.44305 5.61956 5.66723 5.76130 6.06380 6.14151 6.17278 6.17548 7.04058 8.71706 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.002525 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.032185 B =11088.232259 C =11945.083658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.064 3.936 3 H 0.058 0.942 4 C -0.106 4.106 5 C -0.065 4.065 6 H 0.086 0.914 7 C -0.079 4.079 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.130 4.130 13 C 0.051 3.949 14 N -0.533 5.533 15 C 0.068 3.932 16 C -0.079 4.079 17 C -0.086 4.086 18 S -0.200 6.200 19 C -0.539 4.539 20 H 0.073 0.927 21 C 0.014 3.986 22 N -0.908 5.908 23 Si 0.995 3.005 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -1.602 27.442 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.043 4.043 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.085 4.085 6 H 0.105 0.895 7 C -0.079 4.079 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.151 4.151 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.077 4.077 14 N -0.257 5.257 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.235 4.235 18 S 0.028 5.972 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.191 4.191 22 N -0.544 5.544 23 Si 0.816 3.184 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.188 1.188 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.951 -3.194 26.932 27.191 hybrid contribution 0.917 2.327 -0.777 2.619 sum -1.035 -0.867 26.156 26.190 Atomic orbital electron populations 1.21671 0.93200 1.02251 1.01759 1.22663 0.96663 0.96075 0.88918 0.92441 1.22837 0.93933 1.00519 0.97080 1.21336 0.98120 0.95258 0.93752 0.89530 1.19759 0.95058 0.94963 0.98113 1.21163 1.00152 0.93046 0.99788 1.21423 0.97095 0.98463 0.97611 1.21459 0.94869 0.99027 0.99714 1.21427 1.00500 0.93061 0.99498 1.21302 0.96028 0.99277 0.98153 1.22921 0.91266 0.99435 0.94069 1.63496 1.28807 1.26470 1.06945 1.22143 1.00152 0.93778 0.90124 1.21122 1.01625 0.97048 0.92016 1.23146 1.02489 1.00999 0.96894 1.84682 1.91855 1.16444 1.04177 1.23006 1.55438 0.93388 0.96814 0.90897 1.26099 0.94147 0.99278 0.99548 1.70158 1.46548 1.19749 1.17980 0.85056 0.79215 0.77501 0.76580 1.18899 1.19918 1.18843 0.92451 0.90730 0.93364 0.90232 0.89289 0.85900 0.84666 0.84313 0.84335 0.85211 0.91155 0.93323 0.94409 0.90346 0.91811 0.92445 0.92126 0.91825 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.59 71.98 0.69 -1.56 16 2 C 0.06 1.21 3.01 45.39 0.14 1.34 16 3 H 0.06 1.05 7.81 -2.39 -0.02 1.03 16 4 C -0.11 -1.70 5.88 31.98 0.19 -1.51 16 5 C -0.07 -1.19 3.16 -10.36 -0.03 -1.23 16 6 H 0.09 1.49 7.95 -2.39 -0.02 1.47 16 7 C -0.08 -1.47 4.93 -19.87 -0.10 -1.57 16 8 C -0.12 -2.31 8.14 22.27 0.18 -2.12 16 9 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 10 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 11 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 12 C -0.13 -2.24 9.68 22.27 0.22 -2.02 16 13 C 0.05 1.18 5.71 86.65 0.50 1.68 16 14 N -0.53 -12.74 4.81 -860.63 -4.14 -16.88 16 15 C 0.07 1.82 4.54 86.31 0.39 2.21 16 16 C -0.08 -2.70 5.25 30.60 0.16 -2.54 16 17 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 18 S -0.20 -10.99 21.44 -56.49 -1.21 -12.20 16 19 C -0.54 -31.73 9.50 67.96 0.65 -31.08 16 20 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 21 C 0.01 0.82 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 23 Si 0.99 44.44 29.55 68.60 2.03 46.47 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.08 1.30 6.76 -2.39 -0.02 1.29 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 2.25 7.30 -2.91 -0.02 2.23 16 33 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.13 1.86 7.98 -2.91 -0.02 1.84 16 37 H 0.07 1.77 7.02 -2.39 -0.02 1.75 16 38 H 0.05 1.24 6.91 -2.39 -0.02 1.22 16 39 H 0.04 0.98 7.96 -2.38 -0.02 0.96 16 40 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.03 7.14 -2.39 -0.02 2.01 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 45 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -67.88 373.20 2.42 -65.46 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.93 Total: 18.38 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.52 Total: -45.73 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -3.85 Total: -72.37 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -10.99 SS G_CDS: -1.21 Total: -12.20 kcal Total: -67.88 2.42 -65.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.830 kcal (2) G-P(sol) polarization free energy of solvation -67.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds