Wall clock time and date at job start Tue Mar 31 2020 09:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46978 * 2 1 4 4 C 1.50693 * 109.47271 * 240.00536 * 2 1 3 5 5 O 1.21290 * 120.00008 * 259.80717 * 4 2 1 6 6 N 1.34782 * 120.00148 * 79.79887 * 4 2 1 7 7 C 1.37095 * 119.99831 * 183.84303 * 6 4 2 8 8 H 1.08001 * 120.00102 * 133.26011 * 7 6 4 9 9 C 1.38947 * 120.00257 * 313.26072 * 7 6 4 10 10 N 1.31411 * 120.00175 * 161.36431 * 9 7 6 11 11 Si 1.86798 * 120.00129 * 341.36585 * 9 7 6 12 12 H 1.48499 * 109.47510 * 95.29231 * 11 9 7 13 13 H 1.48505 * 109.47449 * 215.29550 * 11 9 7 14 14 H 1.48508 * 109.46900 * 335.29156 * 11 9 7 15 15 C 1.46499 * 119.99801 * 3.84441 * 6 4 2 16 16 C 1.54967 * 110.91834 * 121.90203 * 15 6 4 17 17 C 1.54261 * 104.15773 * 156.29715 * 16 15 6 18 18 C 1.53874 * 106.64065 * 336.43979 * 17 16 15 19 19 C 1.54268 * 106.59848 * 359.97438 * 18 17 16 20 20 C 1.50698 * 109.47539 * 120.00104 * 2 1 3 21 21 C 1.38228 * 120.01043 * 59.72471 * 20 2 1 22 22 C 1.38220 * 120.02133 * 179.72520 * 21 20 2 23 23 C 1.38263 * 120.05424 * 0.55057 * 22 21 20 24 24 C 1.38170 * 120.02531 * 359.72891 * 23 22 21 25 25 C 1.38433 * 120.01484 * 240.00300 * 20 2 1 26 26 F 1.35102 * 120.02872 * 0.02562 * 25 20 2 27 27 H 1.08997 * 109.47227 * 64.33880 * 1 2 3 28 28 H 1.09004 * 109.46770 * 184.34458 * 1 2 3 29 29 H 1.08998 * 109.47091 * 304.33988 * 1 2 3 30 30 H 0.97009 * 120.00141 * 179.97438 * 10 9 7 31 31 H 1.09000 * 110.67296 * 358.59497 * 15 6 4 32 32 H 1.08998 * 110.48032 * 37.63599 * 16 15 6 33 33 H 1.09005 * 110.52964 * 274.96964 * 16 15 6 34 34 H 1.08998 * 110.03221 * 217.13458 * 17 16 15 35 35 H 1.09000 * 110.03820 * 95.74995 * 17 16 15 36 36 H 1.09008 * 110.03352 * 119.26352 * 18 17 16 37 37 H 1.08995 * 110.03448 * 240.64323 * 18 17 16 38 38 H 1.09003 * 110.48634 * 142.28897 * 19 18 17 39 39 H 1.08997 * 110.48546 * 264.79692 * 19 18 17 40 40 H 1.08002 * 119.98307 * 0.02562 * 21 20 2 41 41 H 1.08000 * 119.97017 * 180.28384 * 22 21 20 42 42 H 1.08003 * 119.98748 * 179.75286 * 23 22 21 43 43 H 1.08005 * 120.01697 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.4098 -1.8605 -1.1552 6 7 2.0621 -0.0674 -2.4147 7 6 2.4443 -0.7367 -3.5485 8 1 1.8605 -0.6450 -4.4525 9 6 3.5828 -1.5331 -3.5347 10 7 3.7571 -2.4465 -4.4633 11 14 4.8658 -1.3055 -2.1962 12 1 4.6137 -2.2739 -1.0990 13 1 6.2186 -1.5397 -2.7621 14 1 4.7850 0.0784 -1.6634 15 6 1.6861 1.3465 -2.4903 16 6 2.8453 2.1972 -3.0682 17 6 2.1462 3.4455 -3.6448 18 6 0.6906 3.0402 -3.9363 19 6 0.5553 1.5589 -3.5273 20 6 2.0324 -0.7104 1.2304 21 6 1.6940 -2.0321 1.4522 22 6 2.1594 -2.6856 2.5778 23 6 2.9544 -2.0150 3.4888 24 6 3.2892 -0.6921 3.2721 25 6 2.8283 -0.0379 2.1418 26 9 3.1547 1.2557 1.9292 27 1 -0.3633 0.4450 -0.9263 28 1 -0.3633 -1.0248 0.0779 29 1 -0.3633 0.5797 0.8485 30 1 4.5522 -3.0022 -4.4539 31 1 1.3865 1.7179 -1.5103 32 1 3.3626 1.6511 -3.8570 33 1 3.5419 2.4804 -2.2791 34 1 2.6385 3.7572 -4.5660 35 1 2.1693 4.2563 -2.9167 36 1 0.0074 3.6538 -3.3488 37 1 0.4764 3.1561 -4.9986 38 1 -0.4184 1.3761 -3.0728 39 1 0.7000 0.9100 -4.3911 40 1 1.0697 -2.5557 0.7433 41 1 1.8982 -3.7197 2.7480 42 1 3.3141 -2.5255 4.3699 43 1 3.9106 -0.1685 3.9836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:03 Heat of formation + Delta-G solvation = -71.716150 kcal Electronic energy + Delta-G solvation = -26546.832599 eV Core-core repulsion = 22891.568869 eV Total energy + Delta-G solvation = -3655.263730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.96363 -41.46307 -39.82069 -38.53179 -35.64057 -35.17988 -33.79122 -31.47240 -30.48068 -29.51609 -28.59148 -27.19075 -25.33652 -23.67590 -22.98240 -21.68291 -21.12826 -20.82094 -18.79451 -18.60844 -17.93745 -17.45309 -17.02628 -16.77849 -16.58376 -16.24145 -15.81860 -15.57460 -15.24385 -15.01859 -14.81120 -14.61470 -14.19075 -14.13179 -13.95266 -13.64981 -13.38603 -13.16235 -13.02413 -12.95570 -12.68164 -12.51514 -12.39144 -12.05415 -11.98520 -11.94073 -11.86814 -11.80542 -11.41192 -11.13702 -10.79647 -10.31182 -9.88125 -9.62202 -9.43728 -8.42960 -6.17890 0.16523 0.29367 1.14763 1.27133 1.40623 1.92670 2.36741 2.51938 2.79123 3.03713 3.27588 3.49959 3.67974 3.83020 3.86778 3.91585 4.07237 4.13966 4.20682 4.24553 4.39417 4.45509 4.49596 4.63992 4.66238 4.76181 4.77719 4.82580 4.92135 4.97179 5.00208 5.10265 5.12653 5.17880 5.22261 5.28124 5.41025 5.44120 5.49646 5.52114 5.59509 5.72667 5.93460 5.97238 6.79060 6.94055 7.35948 7.89776 8.66574 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.006828 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.904018 B = 4099.883542 C = 5027.849746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 H 0.100 0.900 4 C 0.458 3.542 5 O -0.578 6.578 6 N -0.468 5.468 7 C -0.321 4.321 8 H 0.073 0.927 9 C 0.054 3.946 10 N -0.911 5.911 11 Si 0.945 3.055 12 H -0.282 1.282 13 H -0.306 1.306 14 H -0.271 1.271 15 C 0.114 3.886 16 C -0.137 4.137 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.070 4.070 22 C -0.137 4.137 23 C -0.088 4.088 24 C -0.160 4.160 25 C 0.073 3.927 26 F -0.147 7.147 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.270 0.730 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 9.900 14.085 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 H 0.118 0.882 4 C 0.248 3.752 5 O -0.462 6.462 6 N -0.189 5.189 7 C -0.449 4.449 8 H 0.091 0.909 9 C -0.150 4.150 10 N -0.549 5.549 11 Si 0.775 3.225 12 H -0.209 1.209 13 H -0.235 1.235 14 H -0.196 1.196 15 C 0.011 3.989 16 C -0.176 4.176 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.165 4.165 20 C -0.122 4.122 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.105 4.105 24 C -0.178 4.178 25 C 0.054 3.946 26 F -0.126 7.126 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.169 0.831 42 H 0.187 0.813 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.973 9.265 13.993 17.813 hybrid contribution 1.153 -0.278 -0.280 1.219 sum -4.820 8.988 13.712 17.089 Atomic orbital electron populations 1.21724 0.89499 1.03235 1.03852 1.20218 0.99862 0.99446 0.89561 0.88225 1.21030 0.81135 0.87061 0.85963 1.90503 1.50647 1.19801 1.85232 1.43765 1.60180 1.08972 1.05979 1.18524 1.08547 1.26682 0.91108 0.90936 1.25769 0.98661 0.93967 0.96635 1.69817 1.28548 1.19536 1.36987 0.85784 0.77209 0.78626 0.80838 1.20897 1.23467 1.19616 1.22576 0.95577 0.80802 0.99942 1.22668 0.97825 0.96933 1.00126 1.22038 0.95550 0.96251 1.01158 1.22044 0.96675 0.94331 1.01880 1.22583 0.97700 0.97647 0.98542 1.19668 1.00670 0.96173 0.95674 1.21014 0.98568 0.92592 0.96602 1.21557 0.98574 1.01390 0.93955 1.21410 0.96070 0.93028 1.00041 1.21409 1.02841 0.96660 0.96910 1.17858 1.00137 0.79159 0.97460 1.91427 1.91256 1.34842 1.95067 0.90934 0.92342 0.89086 0.92074 0.87793 0.93125 0.92760 0.91523 0.89818 0.89373 0.91337 0.90676 0.93275 0.86255 0.83130 0.81302 0.82295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.81 71.98 0.63 -2.91 16 2 C -0.07 -2.51 2.02 -12.29 -0.02 -2.53 16 3 H 0.10 3.40 5.47 -2.38 -0.01 3.39 16 4 C 0.46 21.68 5.17 87.65 0.45 22.13 16 5 O -0.58 -32.14 10.43 -3.06 -0.03 -32.17 16 6 N -0.47 -22.21 2.14 -606.33 -1.30 -23.51 16 7 C -0.32 -18.26 8.10 84.04 0.68 -17.58 16 8 H 0.07 4.38 6.77 -2.91 -0.02 4.36 16 9 C 0.05 3.26 4.86 84.93 0.41 3.67 16 10 N -0.91 -58.06 13.96 21.66 0.30 -57.76 16 11 Si 0.94 52.78 24.97 68.60 1.71 54.49 16 12 H -0.28 -16.76 6.45 99.48 0.64 -16.12 16 13 H -0.31 -16.64 7.11 99.48 0.71 -15.94 16 14 H -0.27 -14.53 7.11 99.48 0.71 -13.82 16 15 C 0.11 4.16 2.58 46.31 0.12 4.28 16 16 C -0.14 -4.86 6.39 31.69 0.20 -4.66 16 17 C -0.11 -2.86 6.80 31.32 0.21 -2.65 16 18 C -0.11 -2.67 6.80 31.32 0.21 -2.45 16 19 C -0.13 -4.01 6.35 31.67 0.20 -3.81 16 20 C -0.12 -4.28 4.60 -19.82 -0.09 -4.37 16 21 C -0.07 -2.36 7.81 22.26 0.17 -2.19 16 22 C -0.14 -3.65 10.04 22.27 0.22 -3.42 16 23 C -0.09 -1.98 10.04 22.26 0.22 -1.75 16 24 C -0.16 -4.06 10.03 22.31 0.22 -3.84 16 25 C 0.07 2.36 7.25 22.38 0.16 2.52 16 26 F -0.15 -4.81 16.19 44.97 0.73 -4.08 16 27 H 0.07 1.95 7.08 -2.39 -0.02 1.93 16 28 H 0.06 1.71 7.23 -2.38 -0.02 1.69 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.27 16.40 8.31 -92.70 -0.77 15.63 16 31 H 0.10 3.24 5.10 -2.39 -0.01 3.23 16 32 H 0.05 2.16 7.25 -2.39 -0.02 2.14 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.09 7.92 -2.39 -0.02 2.07 16 39 H 0.05 1.90 6.43 -2.39 -0.02 1.88 16 40 H 0.12 4.37 7.00 -2.91 -0.02 4.35 16 41 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -75.37 337.59 6.38 -68.99 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.95 Total: 13.62 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.02 Total: -19.57 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -0.99 Total: -81.27 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.03 Total: -32.17 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.73 Total: -4.08 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 1.71 Total: 54.49 kcal Total: -75.37 6.38 -68.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.726 kcal (2) G-P(sol) polarization free energy of solvation -75.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds