Wall clock time and date at job start Tue Mar 31 2020 09:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47310 * 2 1 4 4 C 1.50704 * 109.46843 * 120.00031 * 2 1 3 5 5 O 1.21294 * 119.99873 * 111.56262 * 4 2 1 6 6 N 1.34769 * 119.99948 * 291.83841 * 4 2 1 7 7 C 1.37096 * 120.00276 * 4.08401 * 6 4 2 8 8 H 1.07993 * 120.00251 * 113.35228 * 7 6 4 9 9 C 1.38955 * 119.99769 * 293.35760 * 7 6 4 10 10 N 1.31410 * 119.99963 * 166.13406 * 9 7 6 11 11 Si 1.86803 * 119.99888 * 346.12878 * 9 7 6 12 12 H 1.48509 * 109.46767 * 92.21829 * 11 9 7 13 13 H 1.48499 * 109.46981 * 212.21200 * 11 9 7 14 14 H 1.48496 * 109.47210 * 332.22129 * 11 9 7 15 15 C 1.46498 * 119.99998 * 184.08406 * 6 4 2 16 16 C 1.54269 * 110.03431 * 237.90593 * 15 6 4 17 17 C 1.54958 * 104.16335 * 217.13821 * 16 15 6 18 18 C 1.54882 * 102.77872 * 37.88422 * 17 16 15 19 19 C 1.53875 * 110.03252 * 120.69019 * 15 6 4 20 20 C 1.50698 * 109.47216 * 239.99646 * 2 1 3 21 21 C 1.38217 * 120.01579 * 298.19318 * 20 2 1 22 22 C 1.38227 * 120.02544 * 179.97438 * 21 20 2 23 23 C 1.38261 * 120.05175 * 0.02562 * 22 21 20 24 24 C 1.38176 * 120.02644 * 359.97438 * 23 22 21 25 25 C 1.38441 * 120.00908 * 117.91281 * 20 2 1 26 26 F 1.35094 * 120.02841 * 359.97438 * 25 20 2 27 27 H 1.09002 * 109.47119 * 59.77405 * 1 2 3 28 28 H 1.09005 * 109.47233 * 179.76596 * 1 2 3 29 29 H 1.08998 * 109.47468 * 299.76582 * 1 2 3 30 30 H 0.97006 * 120.00104 * 179.97438 * 10 9 7 31 31 H 1.09001 * 110.01812 * 359.29514 * 15 6 4 32 32 H 1.09005 * 110.48252 * 335.78672 * 16 15 6 33 33 H 1.09004 * 110.48531 * 98.42154 * 16 15 6 34 34 H 1.09000 * 110.71564 * 279.57190 * 17 16 15 35 35 H 1.09001 * 110.92708 * 156.29785 * 17 16 15 36 36 H 1.09000 * 110.49274 * 203.40377 * 18 17 16 37 37 H 1.09007 * 110.59779 * 80.82199 * 18 17 16 38 38 H 1.09004 * 110.02949 * 238.56663 * 19 15 6 39 39 H 1.08989 * 110.03429 * 359.95211 * 19 15 6 40 40 H 1.08006 * 119.98859 * 359.97438 * 21 20 2 41 41 H 1.08007 * 119.97314 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.98688 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.01387 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5984 -1.7780 1.1258 6 7 1.8475 -0.1622 2.4477 7 6 1.1300 0.9991 2.5748 8 1 0.1796 0.9933 3.0876 9 6 1.6257 2.1836 2.0437 10 7 0.8381 3.2281 1.9190 11 14 3.4118 2.2912 1.5072 12 1 3.5175 1.9464 0.0665 13 1 3.9111 3.6730 1.7233 14 1 4.2265 1.3399 2.3049 15 6 2.4133 -0.8072 3.6351 16 6 1.2926 -1.1346 4.6434 17 6 1.9386 -0.8714 6.0271 18 6 2.8126 0.3800 5.7646 19 6 3.3797 0.1551 4.3477 20 6 2.0323 -0.7105 -1.2304 21 6 1.7297 -2.0441 -1.4307 22 6 2.1900 -2.6959 -2.5594 23 6 2.9539 -2.0148 -3.4891 24 6 3.2576 -0.6815 -3.2910 25 6 2.7923 -0.0260 -2.1634 26 9 3.0835 1.2792 -1.9718 27 1 -0.3633 0.5173 -0.8880 28 1 -0.3634 -1.0277 -0.0042 29 1 -0.3634 0.5102 0.8920 30 1 1.1842 4.0551 1.5485 31 1 2.9374 -1.7196 3.3502 32 1 0.4375 -0.4761 4.4903 33 1 0.9921 -2.1786 4.5541 34 1 2.5558 -1.7167 6.3315 35 1 1.1775 -0.6604 6.7783 36 1 3.6206 0.4409 6.4937 37 1 2.2054 1.2848 5.7933 38 1 4.3726 -0.2906 4.4093 39 1 3.4284 1.1017 3.8096 40 1 1.1334 -2.5773 -0.7049 41 1 1.9534 -3.7382 -2.7149 42 1 3.3133 -2.5252 -4.3705 43 1 3.8547 -0.1498 -4.0171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:06 Heat of formation + Delta-G solvation = -56.170170 kcal Electronic energy + Delta-G solvation = -26649.380482 eV Core-core repulsion = 22994.790876 eV Total energy + Delta-G solvation = -3654.589606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.48760 -39.75241 -38.47142 -36.85375 -34.30902 -33.27453 -31.79325 -30.18957 -28.99351 -28.09763 -27.07533 -24.81120 -23.97158 -22.36288 -21.67971 -20.23351 -19.41483 -18.99571 -17.32990 -17.16633 -16.25373 -15.71633 -15.65679 -15.20572 -14.91957 -14.61295 -14.17655 -14.00959 -13.76030 -13.60767 -13.32011 -12.88728 -12.72834 -12.62871 -12.16785 -12.04121 -11.65698 -11.55284 -11.41876 -11.19958 -11.05535 -10.99593 -10.85199 -10.55215 -10.50330 -10.29700 -10.02919 -10.00411 -9.81359 -9.52138 -8.92848 -8.63460 -8.56532 -8.21813 -7.39582 -6.46055 -4.36290 1.50204 1.57941 3.14879 3.26709 3.31774 3.68274 3.91222 4.13902 4.42325 4.66723 4.84575 5.03462 5.12610 5.25013 5.26632 5.30476 5.49157 5.54047 5.69306 5.86559 5.97864 6.03067 6.06779 6.16794 6.17842 6.23982 6.28956 6.33901 6.38661 6.40557 6.44443 6.46952 6.57822 6.60554 6.63902 6.70375 6.89269 6.93130 6.97539 7.06242 7.16877 7.26914 7.71076 7.89797 8.43211 9.01037 9.22736 9.70581 10.61105 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.006277 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.793386 B = 4459.660833 C = 5187.533558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 H 0.109 0.891 4 C 0.506 3.494 5 O -0.587 6.587 6 N -0.466 5.466 7 C -0.343 4.343 8 H 0.098 0.902 9 C 0.085 3.915 10 N -0.860 5.860 11 Si 0.826 3.174 12 H -0.246 1.246 13 H -0.285 1.285 14 H -0.247 1.247 15 C 0.130 3.870 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.089 4.089 21 C -0.051 4.051 22 C -0.139 4.139 23 C -0.102 4.102 24 C -0.164 4.164 25 C 0.096 3.904 26 F -0.136 7.136 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.275 0.725 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -6.609 -3.497 7.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 H 0.127 0.873 4 C 0.295 3.705 5 O -0.471 6.471 6 N -0.187 5.187 7 C -0.470 4.470 8 H 0.115 0.885 9 C -0.124 4.124 10 N -0.494 5.494 11 Si 0.651 3.349 12 H -0.171 1.171 13 H -0.211 1.211 14 H -0.172 1.172 15 C 0.027 3.973 16 C -0.163 4.163 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.090 4.090 21 C -0.069 4.069 22 C -0.157 4.157 23 C -0.120 4.120 24 C -0.183 4.183 25 C 0.077 3.923 26 F -0.114 7.114 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.721 -6.870 -3.569 7.930 hybrid contribution 1.148 0.743 -0.202 1.383 sum 2.869 -6.126 -3.771 7.745 Atomic orbital electron populations 1.21681 0.91550 1.01151 1.04180 1.20176 0.98744 1.00779 0.89275 0.87330 1.20547 0.79669 0.84764 0.85470 1.90535 1.46558 1.22937 1.87031 1.43654 1.48506 1.23385 1.03151 1.18696 1.03196 0.83696 1.41414 0.88506 1.25673 0.96976 0.95202 0.94558 1.69660 1.35416 1.03060 1.41215 0.87835 0.86834 0.78511 0.81698 1.17146 1.21097 1.17162 1.21693 0.93366 0.95532 0.86751 1.22616 0.99434 1.00481 0.93742 1.22417 0.98587 0.97663 0.97130 1.22260 0.98545 0.98416 0.96169 1.22632 0.97319 1.01541 0.95930 1.19827 0.98359 0.95095 0.95739 1.20885 0.97478 0.92707 0.95839 1.21133 0.99677 1.00030 0.94832 1.20862 0.98403 0.93441 0.99340 1.20993 1.03711 0.95971 0.97614 1.17679 0.99527 0.78887 0.96239 1.91525 1.91679 1.33210 1.95019 0.93273 0.93747 0.88054 0.91447 0.90263 0.89976 0.92788 0.92420 0.92208 0.92956 0.91216 0.93210 0.89901 0.85108 0.85834 0.85690 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.85 37.16 0.33 -2.23 16 2 C -0.07 -1.51 1.91 -92.92 -0.18 -1.69 16 3 H 0.11 2.59 2.72 -51.93 -0.14 2.45 16 4 C 0.51 11.87 5.66 -10.99 -0.06 11.81 16 5 O -0.59 -14.47 14.03 5.55 0.08 -14.40 16 6 N -0.47 -10.70 1.66 -106.54 -0.18 -10.88 16 7 C -0.34 -8.29 5.42 -14.93 -0.08 -8.37 16 8 H 0.10 2.50 7.24 -52.49 -0.38 2.12 16 9 C 0.08 2.13 4.44 -17.47 -0.08 2.05 16 10 N -0.86 -22.63 13.96 55.50 0.77 -21.85 16 11 Si 0.83 19.79 23.53 -169.99 -4.00 15.79 16 12 H -0.25 -5.94 4.43 56.52 0.25 -5.69 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.25 -5.93 5.36 56.52 0.30 -5.63 16 15 C 0.13 2.71 3.29 -66.81 -0.22 2.49 16 16 C -0.12 -2.24 6.42 -25.03 -0.16 -2.40 16 17 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 18 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 19 C -0.14 -2.70 5.78 -25.61 -0.15 -2.84 16 20 C -0.09 -1.78 4.51 -104.56 -0.47 -2.26 16 21 C -0.05 -0.90 7.83 -39.59 -0.31 -1.21 16 22 C -0.14 -2.02 10.04 -39.58 -0.40 -2.41 16 23 C -0.10 -1.40 10.04 -39.60 -0.40 -1.80 16 24 C -0.16 -2.56 10.03 -39.51 -0.40 -2.95 16 25 C 0.10 1.85 7.25 -39.42 -0.29 1.57 16 26 F -0.14 -2.85 14.37 2.25 0.03 -2.81 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.80 7.49 -51.93 -0.39 0.41 16 29 H 0.10 2.21 5.98 -51.93 -0.31 1.90 16 30 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.08 1.72 6.95 -51.93 -0.36 1.36 16 32 H 0.08 1.60 6.55 -51.93 -0.34 1.26 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.84 3.64 -51.94 -0.19 1.65 16 40 H 0.13 2.31 7.29 -52.48 -0.38 1.93 16 41 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -27.53 326.98 -7.67 -35.20 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.11 Total: 8.41 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -3.20 Total: -14.38 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.60 Total: -32.73 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.03 Total: -2.81 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.00 Total: 15.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.53 -7.67 -35.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.969 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds