Wall clock time and date at job start Tue Mar 31 2020 09:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46882 * 2 1 4 4 C 1.52999 * 109.47029 * 120.00346 * 2 1 3 5 5 C 1.53007 * 109.47064 * 294.99627 * 4 2 1 6 6 C 1.50703 * 109.46980 * 180.02562 * 5 4 2 7 7 C 1.38265 * 119.98744 * 269.72592 * 6 5 4 8 8 C 1.38222 * 120.05197 * 179.72459 * 7 6 5 9 9 C 1.38220 * 120.02006 * 0.55536 * 8 7 6 10 10 C 1.38430 * 119.98010 * 359.71907 * 9 8 7 11 11 F 1.35097 * 120.03166 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98444 * 90.00699 * 6 5 4 13 13 C 1.50694 * 109.46765 * 240.00151 * 2 1 3 14 14 O 1.21297 * 119.99935 * 248.20590 * 13 2 1 15 15 N 1.34780 * 120.00174 * 68.21348 * 13 2 1 16 16 C 1.37100 * 120.00092 * 185.10447 * 15 13 2 17 17 H 1.07997 * 119.99831 * 324.99512 * 16 15 13 18 18 C 1.38946 * 119.99628 * 144.99025 * 16 15 13 19 19 N 1.31406 * 120.00341 * 3.98875 * 18 16 15 20 20 Si 1.86800 * 119.99611 * 183.98160 * 18 16 15 21 21 H 1.48500 * 109.47715 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46855 * 120.00325 * 20 18 16 23 23 H 1.48499 * 109.47464 * 239.99866 * 20 18 16 24 24 C 1.46502 * 119.99896 * 5.10862 * 15 13 2 25 25 C 1.52995 * 117.49838 * 132.41303 * 24 15 13 26 26 C 1.53004 * 117.49684 * 63.75151 * 24 15 13 27 27 H 1.09002 * 109.47293 * 174.85507 * 1 2 3 28 28 H 1.09008 * 109.46831 * 294.85406 * 1 2 3 29 29 H 1.08994 * 109.47491 * 54.85226 * 1 2 3 30 30 H 1.08998 * 109.46848 * 175.00158 * 4 2 1 31 31 H 1.08996 * 109.47480 * 54.99873 * 4 2 1 32 32 H 1.08996 * 109.47173 * 300.00434 * 5 4 2 33 33 H 1.08998 * 109.46855 * 60.00535 * 5 4 2 34 34 H 1.08005 * 119.97269 * 359.97438 * 7 6 5 35 35 H 1.07995 * 119.99217 * 180.27597 * 8 7 6 36 36 H 1.08009 * 120.00822 * 179.74491 * 9 8 7 37 37 H 1.07999 * 120.01269 * 359.96586 * 12 6 5 38 38 H 0.97002 * 120.00005 * 185.00464 * 19 18 16 39 39 H 1.08995 * 115.54747 * 278.08763 * 24 15 13 40 40 H 1.09002 * 117.50178 * 0.02562 * 25 24 15 41 41 H 1.09000 * 117.49878 * 145.02284 * 25 24 15 42 42 H 1.09005 * 117.49490 * 214.97594 * 26 24 15 43 43 H 1.08992 * 117.50185 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 0.0689 2.4954 6 6 2.1382 -0.6413 3.7258 7 6 1.3434 -1.5824 4.3538 8 6 1.8056 -2.2387 5.4791 9 6 3.0585 -1.9464 5.9844 10 6 3.8528 -1.0003 5.3598 11 9 5.0778 -0.7142 5.8525 12 6 3.3910 -0.3475 4.2291 13 6 2.0323 -0.7104 -1.2305 14 8 2.6021 -1.7760 -1.1254 15 7 1.8484 -0.1616 -2.4477 16 6 2.2107 -0.8545 -3.5738 17 1 3.0809 -1.4939 -3.5579 18 6 1.4582 -0.7342 -4.7356 19 7 0.4461 0.1029 -4.7792 20 14 1.8853 -1.7622 -6.2357 21 1 3.0584 -2.6199 -5.9304 22 1 0.7265 -2.6187 -6.5950 23 1 2.2099 -0.8657 -7.3742 24 6 1.2616 1.1754 -2.5673 25 6 1.9612 2.1738 -3.4917 26 6 2.0460 2.3470 -1.9731 27 1 -0.3634 -1.0235 -0.0922 28 1 -0.3633 0.4320 0.9326 29 1 -0.3634 0.5916 -0.8402 30 1 3.1263 -0.7995 1.2055 31 1 1.6054 -1.7198 1.2951 32 1 2.0699 1.0674 2.4494 33 1 0.5490 0.1471 2.5390 34 1 0.3623 -1.8077 3.9625 35 1 1.1858 -2.9767 5.9663 36 1 3.4177 -2.4564 6.8661 37 1 4.0100 0.3905 3.7406 38 1 -0.1235 0.1348 -5.5638 39 1 0.1739 1.2181 -2.5114 40 1 2.8579 1.8358 -4.0112 41 1 1.3338 2.8737 -4.0437 42 1 1.4743 3.1606 -1.5267 43 1 2.9984 2.1230 -1.4928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079732711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:21 Heat of formation + Delta-G solvation = -53.703724 kcal Electronic energy + Delta-G solvation = -24758.835051 eV Core-core repulsion = 21104.352398 eV Total energy + Delta-G solvation = -3654.482653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89048 -40.90371 -40.05014 -37.95609 -36.42495 -34.84002 -33.31493 -32.70370 -31.43860 -29.25760 -27.18888 -26.00984 -23.91141 -23.61758 -22.95925 -22.73997 -21.65254 -20.09154 -18.72461 -18.26516 -17.57264 -17.27153 -17.05960 -16.89999 -16.59022 -16.27615 -16.06999 -15.69694 -15.07989 -14.88949 -14.78422 -14.46814 -14.01273 -13.82888 -13.69667 -13.48207 -13.32619 -13.02463 -12.91398 -12.66417 -12.55011 -12.39447 -12.24274 -12.22416 -12.06850 -12.02843 -11.66835 -11.50864 -11.28168 -10.99638 -10.61376 -10.12107 -9.85868 -9.57576 -9.49112 -8.26530 -5.99167 0.22573 0.29495 1.34730 1.39185 1.50722 2.11013 2.29364 2.64825 3.04067 3.05902 3.25524 3.29342 3.72646 3.87606 3.92788 4.09740 4.12531 4.25709 4.29466 4.36813 4.40612 4.45296 4.51126 4.59741 4.63746 4.73217 4.85911 4.88644 4.99663 5.04860 5.06181 5.15352 5.18185 5.19474 5.23068 5.40831 5.43266 5.46355 5.47237 5.49385 5.60035 5.67086 6.00192 6.21158 6.61805 7.24641 7.55141 8.13322 8.76684 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.003068 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.816853 B = 9123.160601 C = 9371.457472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.080 4.080 5 C -0.074 4.074 6 C -0.056 4.056 7 C -0.132 4.132 8 C -0.088 4.088 9 C -0.166 4.166 10 C 0.074 3.926 11 F -0.153 7.153 12 C -0.166 4.166 13 C 0.452 3.548 14 O -0.635 6.635 15 N -0.438 5.438 16 C -0.345 4.345 17 H 0.055 0.945 18 C 0.016 3.984 19 N -0.878 5.878 20 Si 0.971 3.029 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.269 1.269 24 C 0.115 3.885 25 C -0.148 4.148 26 C -0.186 4.186 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.270 0.730 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 4.527 17.313 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.123 0.877 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.150 4.150 8 C -0.106 4.106 9 C -0.184 4.184 10 C 0.055 3.945 11 F -0.131 7.131 12 C -0.184 4.184 13 C 0.243 3.757 14 O -0.523 6.523 15 N -0.156 5.156 16 C -0.473 4.473 17 H 0.073 0.927 18 C -0.187 4.187 19 N -0.515 5.515 20 Si 0.796 3.204 21 H -0.207 1.207 22 H -0.200 1.200 23 H -0.194 1.194 24 C 0.011 3.989 25 C -0.185 4.185 26 C -0.224 4.224 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.698 4.154 17.172 17.872 hybrid contribution 0.883 -0.800 -1.293 1.758 sum -1.815 3.354 15.879 16.331 Atomic orbital electron populations 1.21777 0.92114 1.01547 1.03749 1.21194 0.98318 1.00548 0.91253 0.87662 1.21191 0.99804 0.98625 0.92210 1.20724 1.02923 0.98496 0.88939 1.19932 0.93047 0.96485 0.96159 1.21501 1.01251 0.96120 0.96098 1.21366 0.94762 0.98918 0.95528 1.21406 0.95690 0.98875 1.02445 1.17996 0.81363 0.99358 0.95821 1.91458 1.41477 1.92851 1.87345 1.21222 0.97816 1.02824 0.96586 1.21312 0.82543 0.85915 0.85963 1.90469 1.48166 1.26381 1.87239 1.43234 1.54531 1.13530 1.04334 1.19330 1.11674 1.26196 0.90109 0.92669 1.25878 0.95224 0.96869 1.00744 1.69920 1.16769 1.33866 1.30912 0.85222 0.78069 0.78564 0.78574 1.20653 1.19968 1.19376 1.21147 0.94684 0.78796 1.04304 1.22602 1.01672 1.01872 0.92390 1.23617 1.02053 1.00716 0.96033 0.94513 0.88062 0.92412 0.94057 0.93082 0.89323 0.87988 0.83461 0.82129 0.83203 0.84713 0.91994 0.88134 0.92149 0.88584 0.85244 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.88 71.98 0.64 -3.31 16 2 C -0.09 -3.14 2.00 -11.54 -0.02 -3.17 16 3 H 0.11 3.17 5.91 -2.39 -0.01 3.16 16 4 C -0.08 -2.48 3.97 30.60 0.12 -2.36 16 5 C -0.07 -1.55 5.11 29.85 0.15 -1.40 16 6 C -0.06 -1.22 5.13 -19.87 -0.10 -1.32 16 7 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 8 C -0.09 -1.45 10.04 22.26 0.22 -1.23 16 9 C -0.17 -3.14 10.03 22.31 0.22 -2.91 16 10 C 0.07 1.73 7.30 22.37 0.16 1.89 16 11 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 12 C -0.17 -3.89 9.68 22.31 0.22 -3.67 16 13 C 0.45 22.18 6.82 87.65 0.60 22.77 16 14 O -0.64 -36.83 15.83 -3.08 -0.05 -36.88 16 15 N -0.44 -22.33 2.91 -613.14 -1.78 -24.12 16 16 C -0.35 -19.80 8.61 84.04 0.72 -19.07 16 17 H 0.06 3.46 7.59 -2.91 -0.02 3.44 16 18 C 0.02 0.87 5.18 84.93 0.44 1.31 16 19 N -0.88 -45.20 10.62 21.66 0.23 -44.97 16 20 Si 0.97 43.35 29.56 68.60 2.03 45.38 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 C 0.12 4.85 2.56 44.99 0.12 4.96 16 25 C -0.15 -5.88 8.84 30.62 0.27 -5.61 16 26 C -0.19 -6.07 8.55 30.62 0.26 -5.81 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.10 2.03 6.34 -2.38 -0.02 2.02 16 29 H 0.06 1.80 5.70 -2.39 -0.01 1.79 16 30 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.10 1.69 6.40 -2.39 -0.02 1.68 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.27 13.15 8.32 -92.71 -0.77 12.37 16 39 H 0.10 4.31 6.61 -2.39 -0.02 4.29 16 40 H 0.06 2.73 7.98 -2.39 -0.02 2.71 16 41 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 43 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 Total: -1.00 -69.82 353.56 6.45 -63.37 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.01 Total: 21.47 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 4.24 Total: -21.17 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.55 Total: -69.09 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.05 Total: -36.88 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -69.82 6.45 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079732711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.670 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds